Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_777

Experiment: arsenate 0.0005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_776 and Pf6N2E2_777 are separated by 128 nucleotidesPf6N2E2_777 and Pf6N2E2_778 are separated by 76 nucleotides Pf6N2E2_776 - Transcriptional regulator, LysR family, at 885,831 to 886,739 _776 Pf6N2E2_777 - FMN-dependent NADH-azoreductase, at 886,868 to 887,476 _777 Pf6N2E2_778 - Probable lipoprotein signal peptide, at 887,553 to 888,698 _778 Position (kb) 886 887 888Strain fitness (log2 ratio) -2 -1 0 1 2at 886.006 kb on + strand, within Pf6N2E2_776at 886.006 kb on + strand, within Pf6N2E2_776at 886.006 kb on + strand, within Pf6N2E2_776at 886.006 kb on + strand, within Pf6N2E2_776at 886.006 kb on + strand, within Pf6N2E2_776at 886.006 kb on + strandat 886.006 kb on + strand, within Pf6N2E2_776at 886.007 kb on - strand, within Pf6N2E2_776at 886.007 kb on - strand, within Pf6N2E2_776at 886.007 kb on - strand, within Pf6N2E2_776at 886.010 kb on + strand, within Pf6N2E2_776at 886.010 kb on + strand, within Pf6N2E2_776at 886.011 kb on - strand, within Pf6N2E2_776at 886.020 kb on + strand, within Pf6N2E2_776at 886.367 kb on + strand, within Pf6N2E2_776at 886.367 kb on + strand, within Pf6N2E2_776at 886.388 kb on - strand, within Pf6N2E2_776at 886.410 kb on + strand, within Pf6N2E2_776at 886.546 kb on + strand, within Pf6N2E2_776at 886.546 kb on + strand, within Pf6N2E2_776at 886.714 kb on + strandat 886.714 kb on + strandat 886.714 kb on + strandat 886.717 kb on + strandat 886.717 kb on + strandat 886.718 kb on - strandat 886.718 kb on - strandat 886.773 kb on + strandat 886.774 kb on - strandat 886.811 kb on - strandat 886.814 kb on + strandat 886.814 kb on + strandat 886.868 kb on - strandat 886.876 kb on - strandat 886.978 kb on + strand, within Pf6N2E2_777at 886.983 kb on - strand, within Pf6N2E2_777at 886.983 kb on - strand, within Pf6N2E2_777at 887.045 kb on - strand, within Pf6N2E2_777at 887.092 kb on + strand, within Pf6N2E2_777at 887.153 kb on + strand, within Pf6N2E2_777at 887.154 kb on - strand, within Pf6N2E2_777at 887.333 kb on + strand, within Pf6N2E2_777at 887.333 kb on + strand, within Pf6N2E2_777at 887.333 kb on + strand, within Pf6N2E2_777at 887.334 kb on - strand, within Pf6N2E2_777at 887.359 kb on - strand, within Pf6N2E2_777at 887.423 kb on - strandat 887.486 kb on - strandat 887.486 kb on - strandat 887.516 kb on + strandat 887.516 kb on + strandat 887.516 kb on + strandat 887.517 kb on - strandat 887.527 kb on - strandat 887.565 kb on - strandat 887.565 kb on - strandat 887.565 kb on - strandat 887.599 kb on - strandat 887.666 kb on - strandat 887.817 kb on + strand, within Pf6N2E2_778at 887.817 kb on + strand, within Pf6N2E2_778at 887.911 kb on + strand, within Pf6N2E2_778at 888.063 kb on + strand, within Pf6N2E2_778at 888.163 kb on - strand, within Pf6N2E2_778at 888.270 kb on - strand, within Pf6N2E2_778at 888.377 kb on + strand, within Pf6N2E2_778at 888.378 kb on - strand, within Pf6N2E2_778at 888.412 kb on - strand, within Pf6N2E2_778

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Per-strain Table

Position Strand Gene LocusTag Fraction arsenate 0.0005 M
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886,006 + Pf6N2E2_776 0.19 +1.5
886,006 + Pf6N2E2_776 0.19 -1.3
886,006 + Pf6N2E2_776 0.19 +2.4
886,006 + Pf6N2E2_776 0.19 -0.6
886,006 + Pf6N2E2_776 0.19 +0.7
886,006 + +0.8
886,006 + Pf6N2E2_776 0.19 -1.0
886,007 - Pf6N2E2_776 0.19 +0.2
886,007 - Pf6N2E2_776 0.19 -0.4
886,007 - Pf6N2E2_776 0.19 +0.6
886,010 + Pf6N2E2_776 0.20 +0.1
886,010 + Pf6N2E2_776 0.20 +0.2
886,011 - Pf6N2E2_776 0.20 +0.5
886,020 + Pf6N2E2_776 0.21 -1.0
886,367 + Pf6N2E2_776 0.59 +1.5
886,367 + Pf6N2E2_776 0.59 -1.3
886,388 - Pf6N2E2_776 0.61 -1.6
886,410 + Pf6N2E2_776 0.64 +2.2
886,546 + Pf6N2E2_776 0.79 +0.9
886,546 + Pf6N2E2_776 0.79 +0.1
886,714 + +1.2
886,714 + -0.2
886,714 + -1.3
886,717 + +1.6
886,717 + +1.2
886,718 - -0.6
886,718 - -1.2
886,773 + -0.1
886,774 - +0.4
886,811 - -0.1
886,814 + -0.8
886,814 + +0.5
886,868 - -2.6
886,876 - -0.0
886,978 + Pf6N2E2_777 0.18 -0.0
886,983 - Pf6N2E2_777 0.19 -0.8
886,983 - Pf6N2E2_777 0.19 -1.1
887,045 - Pf6N2E2_777 0.29 -0.5
887,092 + Pf6N2E2_777 0.37 -1.8
887,153 + Pf6N2E2_777 0.47 -0.8
887,154 - Pf6N2E2_777 0.47 -0.5
887,333 + Pf6N2E2_777 0.76 +0.2
887,333 + Pf6N2E2_777 0.76 -2.1
887,333 + Pf6N2E2_777 0.76 -0.2
887,334 - Pf6N2E2_777 0.77 +1.0
887,359 - Pf6N2E2_777 0.81 +0.2
887,423 - -0.0
887,486 - +0.8
887,486 - -0.3
887,516 + -0.2
887,516 + -0.2
887,516 + -0.8
887,517 - -0.5
887,527 - +0.4
887,565 - -2.4
887,565 - -0.0
887,565 - -1.1
887,599 - -0.4
887,666 - -1.3
887,817 + Pf6N2E2_778 0.23 +0.4
887,817 + Pf6N2E2_778 0.23 -1.2
887,911 + Pf6N2E2_778 0.31 +0.1
888,063 + Pf6N2E2_778 0.45 -0.4
888,163 - Pf6N2E2_778 0.53 -0.2
888,270 - Pf6N2E2_778 0.63 +0.5
888,377 + Pf6N2E2_778 0.72 +2.2
888,378 - Pf6N2E2_778 0.72 +1.0
888,412 - Pf6N2E2_778 0.75 +2.4

Or see this region's nucleotide sequence