Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6056

Experiment: arsenate 0.0005 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_6054 and Pf6N2E2_6055 are separated by 174 nucleotidesPf6N2E2_6055 and Pf6N2E2_6056 are separated by 142 nucleotidesPf6N2E2_6056 and Pf6N2E2_6057 are separated by 288 nucleotides Pf6N2E2_6054 - Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10), at 6,873,503 to 6,874,246 _6054 Pf6N2E2_6055 - Homoserine kinase (EC 2.7.1.39), at 6,874,421 to 6,875,038 _6055 Pf6N2E2_6056 - Para-aminobenzoate synthase, aminase component (EC 2.6.1.85), at 6,875,181 to 6,876,524 _6056 Pf6N2E2_6057 - FIG002781: Alpha-L-glutamate ligase family protein, at 6,876,813 to 6,877,799 _6057 Position (kb) 6875 6876 6877Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6874.285 kb on + strandat 6874.286 kb on - strandat 6874.286 kb on - strandat 6874.286 kb on - strandat 6874.288 kb on - strandat 6874.301 kb on + strandat 6874.393 kb on + strandat 6874.394 kb on - strandat 6874.536 kb on - strand, within Pf6N2E2_6055at 6874.701 kb on - strand, within Pf6N2E2_6055at 6874.701 kb on - strand, within Pf6N2E2_6055at 6874.850 kb on + strand, within Pf6N2E2_6055at 6874.850 kb on + strand, within Pf6N2E2_6055at 6874.851 kb on - strand, within Pf6N2E2_6055at 6874.851 kb on - strand, within Pf6N2E2_6055at 6874.853 kb on + strand, within Pf6N2E2_6055at 6874.880 kb on + strand, within Pf6N2E2_6055at 6874.880 kb on + strand, within Pf6N2E2_6055at 6874.880 kb on + strand, within Pf6N2E2_6055at 6874.880 kb on + strand, within Pf6N2E2_6055at 6874.881 kb on - strand, within Pf6N2E2_6055at 6874.978 kb on + strandat 6874.978 kb on + strandat 6874.979 kb on - strandat 6874.979 kb on - strandat 6875.006 kb on - strandat 6875.006 kb on - strandat 6875.036 kb on + strandat 6875.036 kb on + strandat 6875.037 kb on - strandat 6875.087 kb on + strandat 6875.087 kb on + strandat 6875.087 kb on + strandat 6875.087 kb on + strandat 6875.088 kb on - strandat 6875.088 kb on - strandat 6875.171 kb on + strandat 6875.172 kb on - strandat 6875.359 kb on + strand, within Pf6N2E2_6056at 6875.360 kb on - strand, within Pf6N2E2_6056at 6875.360 kb on - strand, within Pf6N2E2_6056at 6875.360 kb on - strand, within Pf6N2E2_6056at 6875.377 kb on + strand, within Pf6N2E2_6056at 6875.377 kb on + strand, within Pf6N2E2_6056at 6875.378 kb on - strand, within Pf6N2E2_6056at 6875.860 kb on + strand, within Pf6N2E2_6056at 6875.920 kb on + strand, within Pf6N2E2_6056at 6875.920 kb on + strand, within Pf6N2E2_6056at 6875.921 kb on - strand, within Pf6N2E2_6056at 6875.940 kb on - strand, within Pf6N2E2_6056at 6875.941 kb on + strand, within Pf6N2E2_6056at 6875.941 kb on + strand, within Pf6N2E2_6056at 6875.941 kb on + strand, within Pf6N2E2_6056at 6875.941 kb on + strand, within Pf6N2E2_6056at 6875.942 kb on - strand, within Pf6N2E2_6056at 6875.942 kb on - strand, within Pf6N2E2_6056at 6875.942 kb on - strand, within Pf6N2E2_6056at 6875.942 kb on - strand, within Pf6N2E2_6056at 6875.971 kb on + strand, within Pf6N2E2_6056at 6875.971 kb on + strand, within Pf6N2E2_6056at 6876.148 kb on + strand, within Pf6N2E2_6056at 6876.149 kb on - strand, within Pf6N2E2_6056at 6876.229 kb on + strand, within Pf6N2E2_6056at 6876.229 kb on + strand, within Pf6N2E2_6056at 6876.230 kb on - strand, within Pf6N2E2_6056at 6876.230 kb on - strand, within Pf6N2E2_6056at 6876.230 kb on - strand, within Pf6N2E2_6056at 6876.283 kb on - strand, within Pf6N2E2_6056at 6876.297 kb on + strand, within Pf6N2E2_6056at 6876.297 kb on + strand, within Pf6N2E2_6056at 6876.298 kb on - strand, within Pf6N2E2_6056at 6876.298 kb on - strand, within Pf6N2E2_6056at 6876.472 kb on + strandat 6876.507 kb on + strandat 6876.507 kb on + strandat 6876.508 kb on - strandat 6876.508 kb on - strandat 6876.564 kb on + strandat 6876.564 kb on + strandat 6876.564 kb on + strandat 6876.565 kb on - strandat 6876.588 kb on - strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.609 kb on - strandat 6876.609 kb on - strandat 6876.612 kb on + strandat 6876.612 kb on + strandat 6876.612 kb on + strandat 6876.612 kb on + strandat 6876.612 kb on + strandat 6876.613 kb on - strandat 6876.834 kb on - strandat 6877.046 kb on - strand, within Pf6N2E2_6057at 6877.066 kb on + strandat 6877.066 kb on + strand, within Pf6N2E2_6057at 6877.067 kb on - strand, within Pf6N2E2_6057at 6877.067 kb on - strand, within Pf6N2E2_6057at 6877.067 kb on - strand, within Pf6N2E2_6057

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction arsenate 0.0005 M
remove
6,874,285 + +1.5
6,874,286 - -0.2
6,874,286 - +0.6
6,874,286 - +0.1
6,874,288 - -0.4
6,874,301 + +1.7
6,874,393 + +1.2
6,874,394 - +0.9
6,874,536 - Pf6N2E2_6055 0.19 +0.6
6,874,701 - Pf6N2E2_6055 0.45 -2.5
6,874,701 - Pf6N2E2_6055 0.45 +2.5
6,874,850 + Pf6N2E2_6055 0.69 +0.7
6,874,850 + Pf6N2E2_6055 0.69 +0.3
6,874,851 - Pf6N2E2_6055 0.70 +0.2
6,874,851 - Pf6N2E2_6055 0.70 +1.8
6,874,853 + Pf6N2E2_6055 0.70 +1.1
6,874,880 + Pf6N2E2_6055 0.74 +0.1
6,874,880 + Pf6N2E2_6055 0.74 -0.4
6,874,880 + Pf6N2E2_6055 0.74 +0.1
6,874,880 + Pf6N2E2_6055 0.74 -0.5
6,874,881 - Pf6N2E2_6055 0.74 -0.8
6,874,978 + -1.0
6,874,978 + +0.8
6,874,979 - +0.4
6,874,979 - +0.5
6,875,006 - -0.1
6,875,006 - +0.9
6,875,036 + +0.6
6,875,036 + -0.8
6,875,037 - -2.9
6,875,087 + -0.2
6,875,087 + -0.4
6,875,087 + +0.7
6,875,087 + +1.0
6,875,088 - +0.5
6,875,088 - +0.0
6,875,171 + +0.9
6,875,172 - -0.8
6,875,359 + Pf6N2E2_6056 0.13 +1.1
6,875,360 - Pf6N2E2_6056 0.13 +0.6
6,875,360 - Pf6N2E2_6056 0.13 +0.4
6,875,360 - Pf6N2E2_6056 0.13 +0.7
6,875,377 + Pf6N2E2_6056 0.15 +0.1
6,875,377 + Pf6N2E2_6056 0.15 +0.8
6,875,378 - Pf6N2E2_6056 0.15 -1.3
6,875,860 + Pf6N2E2_6056 0.51 +2.5
6,875,920 + Pf6N2E2_6056 0.55 +1.6
6,875,920 + Pf6N2E2_6056 0.55 -0.5
6,875,921 - Pf6N2E2_6056 0.55 -0.5
6,875,940 - Pf6N2E2_6056 0.56 -0.0
6,875,941 + Pf6N2E2_6056 0.57 +0.9
6,875,941 + Pf6N2E2_6056 0.57 -0.1
6,875,941 + Pf6N2E2_6056 0.57 +1.2
6,875,941 + Pf6N2E2_6056 0.57 +0.9
6,875,942 - Pf6N2E2_6056 0.57 +0.4
6,875,942 - Pf6N2E2_6056 0.57 +0.3
6,875,942 - Pf6N2E2_6056 0.57 -0.7
6,875,942 - Pf6N2E2_6056 0.57 -0.2
6,875,971 + Pf6N2E2_6056 0.59 +0.1
6,875,971 + Pf6N2E2_6056 0.59 +0.2
6,876,148 + Pf6N2E2_6056 0.72 +0.8
6,876,149 - Pf6N2E2_6056 0.72 +0.2
6,876,229 + Pf6N2E2_6056 0.78 +0.4
6,876,229 + Pf6N2E2_6056 0.78 +0.1
6,876,230 - Pf6N2E2_6056 0.78 -0.6
6,876,230 - Pf6N2E2_6056 0.78 +0.3
6,876,230 - Pf6N2E2_6056 0.78 +0.7
6,876,283 - Pf6N2E2_6056 0.82 +0.4
6,876,297 + Pf6N2E2_6056 0.83 +0.5
6,876,297 + Pf6N2E2_6056 0.83 +0.2
6,876,298 - Pf6N2E2_6056 0.83 +0.5
6,876,298 - Pf6N2E2_6056 0.83 -0.7
6,876,472 + +0.5
6,876,507 + +0.5
6,876,507 + -3.3
6,876,508 - +0.4
6,876,508 - -0.5
6,876,564 + +0.8
6,876,564 + -0.0
6,876,564 + +0.3
6,876,565 - +0.7
6,876,588 - +2.0
6,876,608 + -1.2
6,876,608 + -1.5
6,876,608 + -0.4
6,876,608 + -1.2
6,876,608 + +0.2
6,876,608 + -2.6
6,876,608 + +0.2
6,876,608 + +0.2
6,876,608 + -0.7
6,876,608 + +0.6
6,876,609 - +0.4
6,876,609 - -0.2
6,876,612 + -0.2
6,876,612 + +0.3
6,876,612 + +0.5
6,876,612 + -1.2
6,876,612 + +0.3
6,876,613 - +0.2
6,876,834 - -0.1
6,877,046 - Pf6N2E2_6057 0.24 -1.2
6,877,066 + +0.5
6,877,066 + Pf6N2E2_6057 0.26 -0.2
6,877,067 - Pf6N2E2_6057 0.26 -1.4
6,877,067 - Pf6N2E2_6057 0.26 -2.6
6,877,067 - Pf6N2E2_6057 0.26 -0.5

Or see this region's nucleotide sequence