Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5164

Experiment: arsenate 0.0005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5162 and Pf6N2E2_5163 overlap by 45 nucleotidesPf6N2E2_5163 and Pf6N2E2_5164 are separated by 191 nucleotidesPf6N2E2_5164 and Pf6N2E2_5165 overlap by 4 nucleotides Pf6N2E2_5162 - Sugar/maltose fermentation stimulation protein homolog, at 5,951,458 to 5,952,204 _5162 Pf6N2E2_5163 - Iron-sulfur cluster-binding protein, Rieske family, at 5,952,160 to 5,952,477 _5163 Pf6N2E2_5164 - Periplasmic hemin-binding protein, at 5,952,669 to 5,953,547 _5164 Pf6N2E2_5165 - Hemin ABC transporter, permease protein, at 5,953,544 to 5,954,581 _5165 Position (kb) 5952 5953 5954Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5951.794 kb on + strand, within Pf6N2E2_5162at 5951.833 kb on + strand, within Pf6N2E2_5162at 5951.834 kb on - strand, within Pf6N2E2_5162at 5951.992 kb on + strand, within Pf6N2E2_5162at 5951.992 kb on + strand, within Pf6N2E2_5162at 5951.992 kb on + strand, within Pf6N2E2_5162at 5951.992 kb on + strand, within Pf6N2E2_5162at 5951.992 kb on + strand, within Pf6N2E2_5162at 5951.992 kb on + strand, within Pf6N2E2_5162at 5951.992 kb on + strand, within Pf6N2E2_5162at 5951.992 kb on + strand, within Pf6N2E2_5162at 5951.993 kb on - strand, within Pf6N2E2_5162at 5951.993 kb on - strand, within Pf6N2E2_5162at 5951.993 kb on - strand, within Pf6N2E2_5162at 5951.993 kb on - strand, within Pf6N2E2_5162at 5951.993 kb on - strand, within Pf6N2E2_5162at 5952.050 kb on + strand, within Pf6N2E2_5162at 5952.051 kb on - strand, within Pf6N2E2_5162at 5952.052 kb on + strand, within Pf6N2E2_5162at 5952.053 kb on - strand, within Pf6N2E2_5162at 5952.053 kb on - strand, within Pf6N2E2_5162at 5952.053 kb on - strand, within Pf6N2E2_5162at 5952.053 kb on - strand, within Pf6N2E2_5162at 5952.103 kb on + strand, within Pf6N2E2_5162at 5952.161 kb on + strandat 5952.161 kb on + strandat 5952.256 kb on + strand, within Pf6N2E2_5163at 5952.256 kb on + strand, within Pf6N2E2_5163at 5952.256 kb on + strand, within Pf6N2E2_5163at 5952.368 kb on + strand, within Pf6N2E2_5163at 5952.368 kb on + strand, within Pf6N2E2_5163at 5952.368 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.488 kb on - strandat 5952.488 kb on - strandat 5952.488 kb on - strandat 5952.488 kb on - strandat 5952.488 kb on - strandat 5952.488 kb on - strandat 5952.488 kb on - strandat 5952.489 kb on + strandat 5952.489 kb on + strandat 5952.489 kb on + strandat 5952.489 kb on + strandat 5952.489 kb on + strandat 5952.489 kb on + strandat 5952.489 kb on + strandat 5952.489 kb on + strandat 5952.489 kb on + strandat 5952.490 kb on - strandat 5952.490 kb on - strandat 5952.490 kb on - strandat 5952.490 kb on - strandat 5952.490 kb on - strandat 5952.490 kb on - strandat 5952.490 kb on - strandat 5952.490 kb on - strandat 5952.490 kb on - strandat 5952.547 kb on - strandat 5952.620 kb on + strandat 5952.621 kb on - strandat 5953.171 kb on + strand, within Pf6N2E2_5164at 5953.171 kb on + strand, within Pf6N2E2_5164at 5953.171 kb on + strand, within Pf6N2E2_5164at 5953.171 kb on + strand, within Pf6N2E2_5164at 5953.172 kb on - strand, within Pf6N2E2_5164at 5953.172 kb on - strand, within Pf6N2E2_5164at 5953.243 kb on + strand, within Pf6N2E2_5164at 5953.262 kb on + strand, within Pf6N2E2_5164at 5953.262 kb on + strand, within Pf6N2E2_5164at 5953.262 kb on + strand, within Pf6N2E2_5164at 5953.263 kb on - strand, within Pf6N2E2_5164at 5953.263 kb on - strand, within Pf6N2E2_5164at 5953.263 kb on - strand, within Pf6N2E2_5164at 5953.284 kb on + strand, within Pf6N2E2_5164at 5953.284 kb on + strand, within Pf6N2E2_5164at 5953.285 kb on - strand, within Pf6N2E2_5164at 5953.285 kb on - strand, within Pf6N2E2_5164at 5953.750 kb on + strand, within Pf6N2E2_5165at 5953.750 kb on + strand, within Pf6N2E2_5165at 5953.751 kb on - strand, within Pf6N2E2_5165at 5953.751 kb on - strand, within Pf6N2E2_5165at 5953.751 kb on - strand, within Pf6N2E2_5165at 5953.751 kb on - strand, within Pf6N2E2_5165at 5953.934 kb on + strand, within Pf6N2E2_5165at 5953.934 kb on + strand, within Pf6N2E2_5165at 5953.934 kb on + strand, within Pf6N2E2_5165at 5953.934 kb on + strand, within Pf6N2E2_5165at 5953.935 kb on - strand, within Pf6N2E2_5165at 5954.086 kb on + strand, within Pf6N2E2_5165at 5954.086 kb on + strand, within Pf6N2E2_5165at 5954.086 kb on + strand, within Pf6N2E2_5165at 5954.090 kb on + strand, within Pf6N2E2_5165at 5954.091 kb on - strand, within Pf6N2E2_5165at 5954.091 kb on - strand, within Pf6N2E2_5165at 5954.159 kb on + strand, within Pf6N2E2_5165at 5954.159 kb on + strand, within Pf6N2E2_5165at 5954.159 kb on + strand, within Pf6N2E2_5165at 5954.159 kb on + strand, within Pf6N2E2_5165at 5954.160 kb on - strand, within Pf6N2E2_5165at 5954.314 kb on + strand, within Pf6N2E2_5165at 5954.314 kb on + strand, within Pf6N2E2_5165at 5954.314 kb on + strand, within Pf6N2E2_5165at 5954.460 kb on + strand, within Pf6N2E2_5165at 5954.460 kb on + strand, within Pf6N2E2_5165at 5954.461 kb on - strand, within Pf6N2E2_5165at 5954.461 kb on - strand, within Pf6N2E2_5165

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Per-strain Table

Position Strand Gene LocusTag Fraction arsenate 0.0005 M
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5,951,794 + Pf6N2E2_5162 0.45 +0.8
5,951,833 + Pf6N2E2_5162 0.50 +1.7
5,951,834 - Pf6N2E2_5162 0.50 -0.5
5,951,992 + Pf6N2E2_5162 0.71 -0.3
5,951,992 + Pf6N2E2_5162 0.71 -0.6
5,951,992 + Pf6N2E2_5162 0.71 +1.3
5,951,992 + Pf6N2E2_5162 0.71 +0.7
5,951,992 + Pf6N2E2_5162 0.71 -0.6
5,951,992 + Pf6N2E2_5162 0.71 +0.3
5,951,992 + Pf6N2E2_5162 0.71 +0.5
5,951,992 + Pf6N2E2_5162 0.71 +0.1
5,951,993 - Pf6N2E2_5162 0.72 -0.4
5,951,993 - Pf6N2E2_5162 0.72 -0.3
5,951,993 - Pf6N2E2_5162 0.72 +1.7
5,951,993 - Pf6N2E2_5162 0.72 -0.4
5,951,993 - Pf6N2E2_5162 0.72 +0.1
5,952,050 + Pf6N2E2_5162 0.79 +0.5
5,952,051 - Pf6N2E2_5162 0.79 -1.0
5,952,052 + Pf6N2E2_5162 0.80 +0.3
5,952,053 - Pf6N2E2_5162 0.80 +0.5
5,952,053 - Pf6N2E2_5162 0.80 -0.8
5,952,053 - Pf6N2E2_5162 0.80 +0.5
5,952,053 - Pf6N2E2_5162 0.80 -0.0
5,952,103 + Pf6N2E2_5162 0.86 +0.4
5,952,161 + +1.0
5,952,161 + -0.3
5,952,256 + Pf6N2E2_5163 0.30 -1.1
5,952,256 + Pf6N2E2_5163 0.30 -0.6
5,952,256 + Pf6N2E2_5163 0.30 -1.1
5,952,368 + Pf6N2E2_5163 0.65 +0.2
5,952,368 + Pf6N2E2_5163 0.65 -0.0
5,952,368 + Pf6N2E2_5163 0.65 -0.2
5,952,374 + Pf6N2E2_5163 0.67 +0.5
5,952,374 + Pf6N2E2_5163 0.67 +0.5
5,952,374 + Pf6N2E2_5163 0.67 -0.5
5,952,374 + Pf6N2E2_5163 0.67 -0.2
5,952,374 + Pf6N2E2_5163 0.67 +0.4
5,952,374 + Pf6N2E2_5163 0.67 +0.9
5,952,374 + Pf6N2E2_5163 0.67 +0.5
5,952,374 + Pf6N2E2_5163 0.67 +0.1
5,952,374 + Pf6N2E2_5163 0.67 +0.5
5,952,374 + Pf6N2E2_5163 0.67 -0.8
5,952,375 - Pf6N2E2_5163 0.68 +0.1
5,952,375 - Pf6N2E2_5163 0.68 +0.5
5,952,375 - Pf6N2E2_5163 0.68 -0.6
5,952,375 - Pf6N2E2_5163 0.68 +0.9
5,952,375 - Pf6N2E2_5163 0.68 +0.6
5,952,375 - Pf6N2E2_5163 0.68 -1.6
5,952,375 - Pf6N2E2_5163 0.68 -0.2
5,952,375 - Pf6N2E2_5163 0.68 -2.8
5,952,375 - Pf6N2E2_5163 0.68 -0.9
5,952,375 - Pf6N2E2_5163 0.68 +0.5
5,952,375 - Pf6N2E2_5163 0.68 +0.9
5,952,375 - Pf6N2E2_5163 0.68 +0.1
5,952,375 - Pf6N2E2_5163 0.68 +0.4
5,952,487 + -0.9
5,952,487 + -0.3
5,952,487 + -0.3
5,952,487 + -0.2
5,952,487 + +0.2
5,952,487 + +0.6
5,952,487 + -0.1
5,952,487 + +1.3
5,952,487 + +0.5
5,952,487 + -0.1
5,952,487 + +0.6
5,952,487 + +0.8
5,952,487 + -1.4
5,952,487 + -0.9
5,952,487 + -0.3
5,952,487 + -0.2
5,952,487 + -1.1
5,952,487 + -1.5
5,952,487 + +0.2
5,952,487 + -0.4
5,952,487 + +2.2
5,952,487 + +0.6
5,952,488 - +0.6
5,952,488 - -0.0
5,952,488 - +0.8
5,952,488 - -0.1
5,952,488 - -1.0
5,952,488 - +1.5
5,952,488 - +1.2
5,952,489 + -1.0
5,952,489 + -0.0
5,952,489 + +0.0
5,952,489 + +0.7
5,952,489 + +0.2
5,952,489 + +0.3
5,952,489 + +0.5
5,952,489 + +0.5
5,952,489 + +0.1
5,952,490 - +0.6
5,952,490 - -0.6
5,952,490 - +0.3
5,952,490 - -0.6
5,952,490 - -0.2
5,952,490 - +0.6
5,952,490 - -0.5
5,952,490 - -2.0
5,952,490 - +0.8
5,952,547 - +0.6
5,952,620 + -0.5
5,952,621 - -3.0
5,953,171 + Pf6N2E2_5164 0.57 -0.7
5,953,171 + Pf6N2E2_5164 0.57 +0.5
5,953,171 + Pf6N2E2_5164 0.57 -1.3
5,953,171 + Pf6N2E2_5164 0.57 +0.5
5,953,172 - Pf6N2E2_5164 0.57 +0.4
5,953,172 - Pf6N2E2_5164 0.57 +0.1
5,953,243 + Pf6N2E2_5164 0.65 +1.3
5,953,262 + Pf6N2E2_5164 0.67 -0.3
5,953,262 + Pf6N2E2_5164 0.67 +0.8
5,953,262 + Pf6N2E2_5164 0.67 +0.8
5,953,263 - Pf6N2E2_5164 0.68 +0.2
5,953,263 - Pf6N2E2_5164 0.68 +0.4
5,953,263 - Pf6N2E2_5164 0.68 +0.7
5,953,284 + Pf6N2E2_5164 0.70 -0.2
5,953,284 + Pf6N2E2_5164 0.70 -0.6
5,953,285 - Pf6N2E2_5164 0.70 -0.8
5,953,285 - Pf6N2E2_5164 0.70 -0.3
5,953,750 + Pf6N2E2_5165 0.20 +0.2
5,953,750 + Pf6N2E2_5165 0.20 +0.1
5,953,751 - Pf6N2E2_5165 0.20 +0.8
5,953,751 - Pf6N2E2_5165 0.20 -0.4
5,953,751 - Pf6N2E2_5165 0.20 +0.2
5,953,751 - Pf6N2E2_5165 0.20 +0.6
5,953,934 + Pf6N2E2_5165 0.38 +0.6
5,953,934 + Pf6N2E2_5165 0.38 +0.3
5,953,934 + Pf6N2E2_5165 0.38 +0.2
5,953,934 + Pf6N2E2_5165 0.38 +0.2
5,953,935 - Pf6N2E2_5165 0.38 -0.6
5,954,086 + Pf6N2E2_5165 0.52 -0.3
5,954,086 + Pf6N2E2_5165 0.52 +1.2
5,954,086 + Pf6N2E2_5165 0.52 +0.8
5,954,090 + Pf6N2E2_5165 0.53 +0.3
5,954,091 - Pf6N2E2_5165 0.53 -0.7
5,954,091 - Pf6N2E2_5165 0.53 +0.1
5,954,159 + Pf6N2E2_5165 0.59 -1.2
5,954,159 + Pf6N2E2_5165 0.59 -0.2
5,954,159 + Pf6N2E2_5165 0.59 +1.5
5,954,159 + Pf6N2E2_5165 0.59 +0.5
5,954,160 - Pf6N2E2_5165 0.59 +0.2
5,954,314 + Pf6N2E2_5165 0.74 -0.3
5,954,314 + Pf6N2E2_5165 0.74 -1.1
5,954,314 + Pf6N2E2_5165 0.74 -0.2
5,954,460 + Pf6N2E2_5165 0.88 +0.9
5,954,460 + Pf6N2E2_5165 0.88 -0.2
5,954,461 - Pf6N2E2_5165 0.88 +0.9
5,954,461 - Pf6N2E2_5165 0.88 +0.2

Or see this region's nucleotide sequence