Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_31

Experiment: arsenate 0.0005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_30 and Pf6N2E2_31 are separated by 97 nucleotidesPf6N2E2_31 and Pf6N2E2_32 are separated by 204 nucleotides Pf6N2E2_30 - Antisigma transmembrane sensor FpvR, at 66,943 to 67,926 _30 Pf6N2E2_31 - Iron(III) dicitrate transport protein FecA @ Iron siderophore receptor protein, at 68,024 to 70,462 _31 Pf6N2E2_32 - Membrane protein mosC, at 70,667 to 71,818 _32 Position (kb) 68 69 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 67.113 kb on + strand, within Pf6N2E2_30at 67.113 kb on + strand, within Pf6N2E2_30at 67.207 kb on + strand, within Pf6N2E2_30at 67.282 kb on + strand, within Pf6N2E2_30at 67.294 kb on + strand, within Pf6N2E2_30at 67.294 kb on + strand, within Pf6N2E2_30at 67.294 kb on + strand, within Pf6N2E2_30at 67.295 kb on - strand, within Pf6N2E2_30at 67.377 kb on + strand, within Pf6N2E2_30at 67.377 kb on + strand, within Pf6N2E2_30at 67.378 kb on - strand, within Pf6N2E2_30at 67.687 kb on - strand, within Pf6N2E2_30at 67.866 kb on + strandat 67.866 kb on + strandat 67.866 kb on + strandat 67.866 kb on + strandat 67.867 kb on - strandat 67.913 kb on + strandat 67.914 kb on - strandat 67.914 kb on - strandat 67.994 kb on - strandat 68.053 kb on + strandat 68.061 kb on + strandat 68.061 kb on + strandat 68.061 kb on + strandat 68.062 kb on - strandat 68.062 kb on - strandat 68.062 kb on - strandat 68.117 kb on + strandat 68.132 kb on - strandat 68.676 kb on - strand, within Pf6N2E2_31at 68.937 kb on - strand, within Pf6N2E2_31at 68.937 kb on - strand, within Pf6N2E2_31at 69.056 kb on + strand, within Pf6N2E2_31at 69.057 kb on - strand, within Pf6N2E2_31at 69.057 kb on - strand, within Pf6N2E2_31at 69.059 kb on + strand, within Pf6N2E2_31at 69.059 kb on + strand, within Pf6N2E2_31at 69.059 kb on + strand, within Pf6N2E2_31at 69.059 kb on + strand, within Pf6N2E2_31at 69.059 kb on + strand, within Pf6N2E2_31at 69.060 kb on - strand, within Pf6N2E2_31at 69.060 kb on - strand, within Pf6N2E2_31at 69.060 kb on - strand, within Pf6N2E2_31at 69.060 kb on - strand, within Pf6N2E2_31at 69.060 kb on - strand, within Pf6N2E2_31at 69.105 kb on - strand, within Pf6N2E2_31at 69.224 kb on + strand, within Pf6N2E2_31at 69.224 kb on + strand, within Pf6N2E2_31at 69.224 kb on + strand, within Pf6N2E2_31at 69.224 kb on + strand, within Pf6N2E2_31at 69.225 kb on - strand, within Pf6N2E2_31at 69.225 kb on - strand, within Pf6N2E2_31at 69.225 kb on - strand, within Pf6N2E2_31at 69.225 kb on - strand, within Pf6N2E2_31at 69.225 kb on - strand, within Pf6N2E2_31at 69.225 kb on - strand, within Pf6N2E2_31at 69.225 kb on - strand, within Pf6N2E2_31at 69.225 kb on - strand, within Pf6N2E2_31at 69.227 kb on + strand, within Pf6N2E2_31at 69.228 kb on - strand, within Pf6N2E2_31at 69.228 kb on - strand, within Pf6N2E2_31at 69.228 kb on - strand, within Pf6N2E2_31at 69.239 kb on + strand, within Pf6N2E2_31at 69.240 kb on - strand, within Pf6N2E2_31at 69.299 kb on + strand, within Pf6N2E2_31at 69.300 kb on - strand, within Pf6N2E2_31at 69.300 kb on - strand, within Pf6N2E2_31at 69.302 kb on + strand, within Pf6N2E2_31at 69.303 kb on - strand, within Pf6N2E2_31at 69.303 kb on - strand, within Pf6N2E2_31at 69.303 kb on - strand, within Pf6N2E2_31at 69.303 kb on - strand, within Pf6N2E2_31at 69.303 kb on - strand, within Pf6N2E2_31at 69.303 kb on - strand, within Pf6N2E2_31at 69.303 kb on - strand, within Pf6N2E2_31at 69.384 kb on - strand, within Pf6N2E2_31at 69.473 kb on + strand, within Pf6N2E2_31at 69.474 kb on - strand, within Pf6N2E2_31at 69.512 kb on + strand, within Pf6N2E2_31at 69.512 kb on + strand, within Pf6N2E2_31at 69.512 kb on + strand, within Pf6N2E2_31at 69.512 kb on + strand, within Pf6N2E2_31at 69.512 kb on + strand, within Pf6N2E2_31at 69.512 kb on + strand, within Pf6N2E2_31at 69.512 kb on + strand, within Pf6N2E2_31at 69.513 kb on - strand, within Pf6N2E2_31at 69.513 kb on - strand, within Pf6N2E2_31at 69.513 kb on - strand, within Pf6N2E2_31at 69.513 kb on - strand, within Pf6N2E2_31at 69.513 kb on - strand, within Pf6N2E2_31at 69.513 kb on - strand, within Pf6N2E2_31at 69.513 kb on - strand, within Pf6N2E2_31at 69.686 kb on + strand, within Pf6N2E2_31at 69.686 kb on + strand, within Pf6N2E2_31at 69.686 kb on + strand, within Pf6N2E2_31at 69.686 kb on + strand, within Pf6N2E2_31at 69.686 kb on + strand, within Pf6N2E2_31at 69.686 kb on + strand, within Pf6N2E2_31at 69.686 kb on + strand, within Pf6N2E2_31at 69.686 kb on + strand, within Pf6N2E2_31at 69.686 kb on + strand, within Pf6N2E2_31at 69.687 kb on - strand, within Pf6N2E2_31at 69.687 kb on - strand, within Pf6N2E2_31at 69.687 kb on - strand, within Pf6N2E2_31at 69.687 kb on - strand, within Pf6N2E2_31at 69.687 kb on - strand, within Pf6N2E2_31at 69.687 kb on - strand, within Pf6N2E2_31at 69.687 kb on - strand, within Pf6N2E2_31at 69.687 kb on - strand, within Pf6N2E2_31at 69.687 kb on - strand, within Pf6N2E2_31at 69.687 kb on - strand, within Pf6N2E2_31at 69.687 kb on - strand, within Pf6N2E2_31at 69.687 kb on - strand, within Pf6N2E2_31at 69.722 kb on + strand, within Pf6N2E2_31at 69.723 kb on - strand, within Pf6N2E2_31at 69.723 kb on - strand, within Pf6N2E2_31at 69.749 kb on + strand, within Pf6N2E2_31at 69.821 kb on + strand, within Pf6N2E2_31at 69.822 kb on - strand, within Pf6N2E2_31at 69.839 kb on + strand, within Pf6N2E2_31at 69.840 kb on - strand, within Pf6N2E2_31at 69.878 kb on + strand, within Pf6N2E2_31at 69.878 kb on + strand, within Pf6N2E2_31at 69.879 kb on - strand, within Pf6N2E2_31at 69.879 kb on - strand, within Pf6N2E2_31at 69.906 kb on - strand, within Pf6N2E2_31at 69.906 kb on - strand, within Pf6N2E2_31at 69.978 kb on - strand, within Pf6N2E2_31at 69.978 kb on - strand, within Pf6N2E2_31at 70.038 kb on - strand, within Pf6N2E2_31at 70.052 kb on + strand, within Pf6N2E2_31at 70.052 kb on + strand, within Pf6N2E2_31at 70.052 kb on + strand, within Pf6N2E2_31at 70.052 kb on + strand, within Pf6N2E2_31at 70.053 kb on - strand, within Pf6N2E2_31at 70.053 kb on - strand, within Pf6N2E2_31at 70.097 kb on + strand, within Pf6N2E2_31at 70.098 kb on - strand, within Pf6N2E2_31at 70.130 kb on + strand, within Pf6N2E2_31at 70.151 kb on + strand, within Pf6N2E2_31at 70.151 kb on + strand, within Pf6N2E2_31at 70.151 kb on + strand, within Pf6N2E2_31at 70.152 kb on - strand, within Pf6N2E2_31at 70.152 kb on - strand, within Pf6N2E2_31at 70.152 kb on - strand, within Pf6N2E2_31at 70.232 kb on + strandat 70.232 kb on + strandat 70.232 kb on + strandat 70.233 kb on - strandat 70.233 kb on - strandat 70.233 kb on - strandat 70.233 kb on - strandat 70.233 kb on - strandat 70.280 kb on + strandat 70.307 kb on + strandat 70.376 kb on + strandat 70.376 kb on + strandat 70.377 kb on - strandat 70.377 kb on - strandat 70.379 kb on + strandat 70.379 kb on + strandat 70.379 kb on + strandat 70.379 kb on + strandat 70.380 kb on - strandat 70.380 kb on - strandat 70.380 kb on - strandat 70.380 kb on - strandat 70.380 kb on - strandat 70.380 kb on - strandat 70.412 kb on + strandat 70.412 kb on + strandat 70.413 kb on - strandat 70.413 kb on - strandat 70.413 kb on - strandat 70.429 kb on + strandat 70.480 kb on + strandat 70.480 kb on + strandat 70.480 kb on + strandat 70.481 kb on - strandat 70.498 kb on + strandat 70.498 kb on + strandat 70.511 kb on - strandat 70.841 kb on + strand, within Pf6N2E2_32at 70.842 kb on - strand, within Pf6N2E2_32at 70.842 kb on - strand, within Pf6N2E2_32at 70.866 kb on + strand, within Pf6N2E2_32at 70.866 kb on + strand, within Pf6N2E2_32at 70.920 kb on - strand, within Pf6N2E2_32at 70.920 kb on - strand, within Pf6N2E2_32at 70.986 kb on + strand, within Pf6N2E2_32at 70.987 kb on - strand, within Pf6N2E2_32at 70.987 kb on - strand, within Pf6N2E2_32at 71.018 kb on + strand, within Pf6N2E2_32at 71.018 kb on + strand, within Pf6N2E2_32at 71.019 kb on - strand, within Pf6N2E2_32at 71.019 kb on - strand, within Pf6N2E2_32at 71.019 kb on - strand, within Pf6N2E2_32at 71.019 kb on - strand, within Pf6N2E2_32at 71.073 kb on + strand, within Pf6N2E2_32at 71.282 kb on + strand, within Pf6N2E2_32at 71.283 kb on - strand, within Pf6N2E2_32

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Per-strain Table

Position Strand Gene LocusTag Fraction arsenate 0.0005 M
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67,113 + Pf6N2E2_30 0.17 +1.4
67,113 + Pf6N2E2_30 0.17 +0.8
67,207 + Pf6N2E2_30 0.27 -0.0
67,282 + Pf6N2E2_30 0.34 +1.2
67,294 + Pf6N2E2_30 0.36 +0.6
67,294 + Pf6N2E2_30 0.36 +0.3
67,294 + Pf6N2E2_30 0.36 +0.4
67,295 - Pf6N2E2_30 0.36 -0.7
67,377 + Pf6N2E2_30 0.44 +0.0
67,377 + Pf6N2E2_30 0.44 +0.6
67,378 - Pf6N2E2_30 0.44 +0.1
67,687 - Pf6N2E2_30 0.76 +0.9
67,866 + -1.6
67,866 + +1.8
67,866 + +1.4
67,866 + +0.6
67,867 - -0.1
67,913 + -1.1
67,914 - +0.0
67,914 - -1.9
67,994 - -0.1
68,053 + -0.4
68,061 + +0.1
68,061 + +0.6
68,061 + +0.3
68,062 - -1.4
68,062 - -1.8
68,062 - +0.1
68,117 + -0.2
68,132 - +1.1
68,676 - Pf6N2E2_31 0.27 +0.4
68,937 - Pf6N2E2_31 0.37 +0.0
68,937 - Pf6N2E2_31 0.37 -0.2
69,056 + Pf6N2E2_31 0.42 -0.2
69,057 - Pf6N2E2_31 0.42 -0.5
69,057 - Pf6N2E2_31 0.42 -0.3
69,059 + Pf6N2E2_31 0.42 -0.1
69,059 + Pf6N2E2_31 0.42 -0.2
69,059 + Pf6N2E2_31 0.42 -0.2
69,059 + Pf6N2E2_31 0.42 -0.1
69,059 + Pf6N2E2_31 0.42 -1.9
69,060 - Pf6N2E2_31 0.42 -0.6
69,060 - Pf6N2E2_31 0.42 -0.4
69,060 - Pf6N2E2_31 0.42 +0.1
69,060 - Pf6N2E2_31 0.42 +1.2
69,060 - Pf6N2E2_31 0.42 +0.6
69,105 - Pf6N2E2_31 0.44 -0.4
69,224 + Pf6N2E2_31 0.49 -0.0
69,224 + Pf6N2E2_31 0.49 -0.1
69,224 + Pf6N2E2_31 0.49 +1.3
69,224 + Pf6N2E2_31 0.49 +0.1
69,225 - Pf6N2E2_31 0.49 +0.9
69,225 - Pf6N2E2_31 0.49 -1.6
69,225 - Pf6N2E2_31 0.49 -2.0
69,225 - Pf6N2E2_31 0.49 +0.4
69,225 - Pf6N2E2_31 0.49 -0.2
69,225 - Pf6N2E2_31 0.49 +0.5
69,225 - Pf6N2E2_31 0.49 -0.4
69,225 - Pf6N2E2_31 0.49 -0.9
69,227 + Pf6N2E2_31 0.49 -0.7
69,228 - Pf6N2E2_31 0.49 -0.1
69,228 - Pf6N2E2_31 0.49 -0.0
69,228 - Pf6N2E2_31 0.49 +0.1
69,239 + Pf6N2E2_31 0.50 +1.0
69,240 - Pf6N2E2_31 0.50 -2.2
69,299 + Pf6N2E2_31 0.52 +0.6
69,300 - Pf6N2E2_31 0.52 -0.0
69,300 - Pf6N2E2_31 0.52 +0.5
69,302 + Pf6N2E2_31 0.52 -0.8
69,303 - Pf6N2E2_31 0.52 +0.4
69,303 - Pf6N2E2_31 0.52 +0.1
69,303 - Pf6N2E2_31 0.52 +0.0
69,303 - Pf6N2E2_31 0.52 +0.2
69,303 - Pf6N2E2_31 0.52 +0.9
69,303 - Pf6N2E2_31 0.52 -0.2
69,303 - Pf6N2E2_31 0.52 -0.2
69,384 - Pf6N2E2_31 0.56 -1.5
69,473 + Pf6N2E2_31 0.59 +0.4
69,474 - Pf6N2E2_31 0.59 +1.0
69,512 + Pf6N2E2_31 0.61 +0.3
69,512 + Pf6N2E2_31 0.61 -0.3
69,512 + Pf6N2E2_31 0.61 -1.0
69,512 + Pf6N2E2_31 0.61 +0.2
69,512 + Pf6N2E2_31 0.61 -0.2
69,512 + Pf6N2E2_31 0.61 -0.2
69,512 + Pf6N2E2_31 0.61 -0.7
69,513 - Pf6N2E2_31 0.61 -0.7
69,513 - Pf6N2E2_31 0.61 +0.5
69,513 - Pf6N2E2_31 0.61 -0.0
69,513 - Pf6N2E2_31 0.61 -0.7
69,513 - Pf6N2E2_31 0.61 +0.3
69,513 - Pf6N2E2_31 0.61 +0.6
69,513 - Pf6N2E2_31 0.61 +1.2
69,686 + Pf6N2E2_31 0.68 -0.9
69,686 + Pf6N2E2_31 0.68 +0.4
69,686 + Pf6N2E2_31 0.68 +0.0
69,686 + Pf6N2E2_31 0.68 +0.1
69,686 + Pf6N2E2_31 0.68 -0.5
69,686 + Pf6N2E2_31 0.68 +0.3
69,686 + Pf6N2E2_31 0.68 +0.8
69,686 + Pf6N2E2_31 0.68 +1.4
69,686 + Pf6N2E2_31 0.68 +0.7
69,687 - Pf6N2E2_31 0.68 -0.8
69,687 - Pf6N2E2_31 0.68 -0.1
69,687 - Pf6N2E2_31 0.68 +0.9
69,687 - Pf6N2E2_31 0.68 +0.2
69,687 - Pf6N2E2_31 0.68 -0.1
69,687 - Pf6N2E2_31 0.68 +0.2
69,687 - Pf6N2E2_31 0.68 +1.8
69,687 - Pf6N2E2_31 0.68 -0.7
69,687 - Pf6N2E2_31 0.68 -1.1
69,687 - Pf6N2E2_31 0.68 +0.8
69,687 - Pf6N2E2_31 0.68 +1.0
69,687 - Pf6N2E2_31 0.68 +0.1
69,722 + Pf6N2E2_31 0.70 +0.5
69,723 - Pf6N2E2_31 0.70 +0.5
69,723 - Pf6N2E2_31 0.70 +0.4
69,749 + Pf6N2E2_31 0.71 -0.0
69,821 + Pf6N2E2_31 0.74 -0.2
69,822 - Pf6N2E2_31 0.74 -0.5
69,839 + Pf6N2E2_31 0.74 +0.1
69,840 - Pf6N2E2_31 0.74 -0.1
69,878 + Pf6N2E2_31 0.76 +0.6
69,878 + Pf6N2E2_31 0.76 -0.2
69,879 - Pf6N2E2_31 0.76 +0.9
69,879 - Pf6N2E2_31 0.76 -1.6
69,906 - Pf6N2E2_31 0.77 -1.1
69,906 - Pf6N2E2_31 0.77 +1.0
69,978 - Pf6N2E2_31 0.80 +0.1
69,978 - Pf6N2E2_31 0.80 +0.1
70,038 - Pf6N2E2_31 0.83 -0.8
70,052 + Pf6N2E2_31 0.83 +1.0
70,052 + Pf6N2E2_31 0.83 -0.6
70,052 + Pf6N2E2_31 0.83 -0.2
70,052 + Pf6N2E2_31 0.83 -0.3
70,053 - Pf6N2E2_31 0.83 +0.7
70,053 - Pf6N2E2_31 0.83 -0.8
70,097 + Pf6N2E2_31 0.85 +0.4
70,098 - Pf6N2E2_31 0.85 -1.0
70,130 + Pf6N2E2_31 0.86 +0.9
70,151 + Pf6N2E2_31 0.87 +1.4
70,151 + Pf6N2E2_31 0.87 -0.9
70,151 + Pf6N2E2_31 0.87 -0.2
70,152 - Pf6N2E2_31 0.87 -0.1
70,152 - Pf6N2E2_31 0.87 -0.9
70,152 - Pf6N2E2_31 0.87 -0.6
70,232 + +1.6
70,232 + -1.7
70,232 + -0.0
70,233 - -0.7
70,233 - -0.2
70,233 - -0.1
70,233 - +0.4
70,233 - -0.7
70,280 + -1.1
70,307 + -0.5
70,376 + -0.2
70,376 + +0.1
70,377 - +2.4
70,377 - -0.3
70,379 + +1.0
70,379 + +0.1
70,379 + +0.4
70,379 + +0.4
70,380 - -3.1
70,380 - -0.0
70,380 - +0.4
70,380 - +0.4
70,380 - +1.3
70,380 - -0.4
70,412 + +0.6
70,412 + -0.4
70,413 - +0.3
70,413 - +0.9
70,413 - -0.7
70,429 + +0.9
70,480 + -0.4
70,480 + +0.3
70,480 + +0.4
70,481 - -0.1
70,498 + -1.3
70,498 + +0.1
70,511 - +0.2
70,841 + Pf6N2E2_32 0.15 -0.6
70,842 - Pf6N2E2_32 0.15 +0.7
70,842 - Pf6N2E2_32 0.15 +0.3
70,866 + Pf6N2E2_32 0.17 -0.7
70,866 + Pf6N2E2_32 0.17 +0.4
70,920 - Pf6N2E2_32 0.22 +0.8
70,920 - Pf6N2E2_32 0.22 +0.8
70,986 + Pf6N2E2_32 0.28 -0.6
70,987 - Pf6N2E2_32 0.28 +0.1
70,987 - Pf6N2E2_32 0.28 -0.2
71,018 + Pf6N2E2_32 0.30 -0.8
71,018 + Pf6N2E2_32 0.30 +1.1
71,019 - Pf6N2E2_32 0.31 +0.6
71,019 - Pf6N2E2_32 0.31 -0.5
71,019 - Pf6N2E2_32 0.31 +0.0
71,019 - Pf6N2E2_32 0.31 +0.1
71,073 + Pf6N2E2_32 0.35 +0.3
71,282 + Pf6N2E2_32 0.53 +1.0
71,283 - Pf6N2E2_32 0.53 +0.2

Or see this region's nucleotide sequence