Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1544

Experiment: arsenate 0.0005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1543 and Pf6N2E2_1544 overlap by 11 nucleotidesPf6N2E2_1544 and Pf6N2E2_1545 are separated by 199 nucleotides Pf6N2E2_1543 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 1,801,238 to 1,802,719 _1543 Pf6N2E2_1544 - Thermostable hemolysin delta-VPH, at 1,802,709 to 1,803,386 _1544 Pf6N2E2_1545 - N-carbamoylputrescine amidase (EC 3.5.1.53), at 1,803,586 to 1,805,337 _1545 Position (kb) 1802 1803 1804Strain fitness (log2 ratio) -2 -1 0 1 2at 1802.115 kb on + strand, within Pf6N2E2_1543at 1802.115 kb on + strand, within Pf6N2E2_1543at 1802.116 kb on - strand, within Pf6N2E2_1543at 1802.116 kb on - strand, within Pf6N2E2_1543at 1802.127 kb on + strand, within Pf6N2E2_1543at 1802.128 kb on - strand, within Pf6N2E2_1543at 1802.166 kb on - strand, within Pf6N2E2_1543at 1802.593 kb on - strandat 1802.607 kb on + strandat 1802.986 kb on + strand, within Pf6N2E2_1544at 1802.986 kb on + strand, within Pf6N2E2_1544at 1802.986 kb on + strand, within Pf6N2E2_1544at 1802.987 kb on - strand, within Pf6N2E2_1544at 1802.987 kb on - strand, within Pf6N2E2_1544at 1802.987 kb on - strand, within Pf6N2E2_1544at 1802.987 kb on - strand, within Pf6N2E2_1544at 1802.987 kb on - strand, within Pf6N2E2_1544at 1803.121 kb on + strand, within Pf6N2E2_1544at 1803.121 kb on + strand, within Pf6N2E2_1544at 1803.121 kb on + strand, within Pf6N2E2_1544at 1803.422 kb on + strandat 1803.423 kb on - strandat 1803.423 kb on - strandat 1803.439 kb on - strandat 1803.523 kb on + strandat 1803.523 kb on + strandat 1803.718 kb on + strandat 1803.872 kb on - strand, within Pf6N2E2_1545at 1803.889 kb on + strand, within Pf6N2E2_1545at 1803.889 kb on + strand, within Pf6N2E2_1545at 1803.889 kb on + strand, within Pf6N2E2_1545at 1803.890 kb on - strand, within Pf6N2E2_1545at 1804.087 kb on + strand, within Pf6N2E2_1545at 1804.228 kb on - strand, within Pf6N2E2_1545

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Per-strain Table

Position Strand Gene LocusTag Fraction arsenate 0.0005 M
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1,802,115 + Pf6N2E2_1543 0.59 -0.0
1,802,115 + Pf6N2E2_1543 0.59 +1.0
1,802,116 - Pf6N2E2_1543 0.59 +0.7
1,802,116 - Pf6N2E2_1543 0.59 +0.4
1,802,127 + Pf6N2E2_1543 0.60 -0.2
1,802,128 - Pf6N2E2_1543 0.60 +0.4
1,802,166 - Pf6N2E2_1543 0.63 -0.5
1,802,593 - +0.3
1,802,607 + +0.0
1,802,986 + Pf6N2E2_1544 0.41 -0.4
1,802,986 + Pf6N2E2_1544 0.41 -0.9
1,802,986 + Pf6N2E2_1544 0.41 -2.5
1,802,987 - Pf6N2E2_1544 0.41 +0.0
1,802,987 - Pf6N2E2_1544 0.41 -0.5
1,802,987 - Pf6N2E2_1544 0.41 -2.2
1,802,987 - Pf6N2E2_1544 0.41 -0.4
1,802,987 - Pf6N2E2_1544 0.41 -0.8
1,803,121 + Pf6N2E2_1544 0.61 -1.9
1,803,121 + Pf6N2E2_1544 0.61 +0.0
1,803,121 + Pf6N2E2_1544 0.61 -1.8
1,803,422 + +1.9
1,803,423 - +1.6
1,803,423 - -0.3
1,803,439 - +0.3
1,803,523 + -0.6
1,803,523 + +1.8
1,803,718 + +1.2
1,803,872 - Pf6N2E2_1545 0.16 +0.8
1,803,889 + Pf6N2E2_1545 0.17 -0.8
1,803,889 + Pf6N2E2_1545 0.17 +0.6
1,803,889 + Pf6N2E2_1545 0.17 +0.1
1,803,890 - Pf6N2E2_1545 0.17 -0.0
1,804,087 + Pf6N2E2_1545 0.29 -1.1
1,804,228 - Pf6N2E2_1545 0.37 -0.3

Or see this region's nucleotide sequence