Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1133

Experiment: arsenate 0.0005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1132 and Pf6N2E2_1133 are separated by 67 nucleotidesPf6N2E2_1133 and Pf6N2E2_1134 are separated by 36 nucleotidesPf6N2E2_1134 and Pf6N2E2_1135 are separated by 285 nucleotides Pf6N2E2_1132 - Fe2+-dicitrate sensor, membrane component, at 1,327,866 to 1,328,810 _1132 Pf6N2E2_1133 - TonB-dependent ferric achromobactin receptor protein, at 1,328,878 to 1,331,301 _1133 Pf6N2E2_1134 - Ribosomal protein S3AE, at 1,331,338 to 1,331,739 _1134 Pf6N2E2_1135 - COGs COG3558, at 1,332,025 to 1,332,504 _1135 Position (kb) 1328 1329 1330 1331 1332Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1328.979 kb on + strandat 1328.979 kb on + strandat 1329.019 kb on + strandat 1329.019 kb on + strandat 1329.217 kb on + strand, within Pf6N2E2_1133at 1329.217 kb on + strand, within Pf6N2E2_1133at 1329.217 kb on + strand, within Pf6N2E2_1133at 1329.217 kb on + strand, within Pf6N2E2_1133at 1329.217 kb on + strand, within Pf6N2E2_1133at 1329.217 kb on + strand, within Pf6N2E2_1133at 1329.217 kb on + strand, within Pf6N2E2_1133at 1329.217 kb on + strand, within Pf6N2E2_1133at 1329.217 kb on + strand, within Pf6N2E2_1133at 1329.218 kb on - strand, within Pf6N2E2_1133at 1329.218 kb on - strand, within Pf6N2E2_1133at 1329.218 kb on - strand, within Pf6N2E2_1133at 1329.394 kb on + strand, within Pf6N2E2_1133at 1329.394 kb on + strand, within Pf6N2E2_1133at 1329.394 kb on + strand, within Pf6N2E2_1133at 1329.394 kb on + strand, within Pf6N2E2_1133at 1329.394 kb on + strand, within Pf6N2E2_1133at 1329.394 kb on + strand, within Pf6N2E2_1133at 1329.394 kb on + strand, within Pf6N2E2_1133at 1329.395 kb on - strand, within Pf6N2E2_1133at 1329.395 kb on - strand, within Pf6N2E2_1133at 1329.395 kb on - strand, within Pf6N2E2_1133at 1329.395 kb on - strand, within Pf6N2E2_1133at 1329.397 kb on - strand, within Pf6N2E2_1133at 1329.544 kb on + strand, within Pf6N2E2_1133at 1329.545 kb on - strand, within Pf6N2E2_1133at 1329.574 kb on + strand, within Pf6N2E2_1133at 1329.575 kb on - strand, within Pf6N2E2_1133at 1329.642 kb on + strand, within Pf6N2E2_1133at 1329.730 kb on + strand, within Pf6N2E2_1133at 1329.730 kb on + strand, within Pf6N2E2_1133at 1329.730 kb on + strand, within Pf6N2E2_1133at 1329.730 kb on + strand, within Pf6N2E2_1133at 1329.731 kb on - strand, within Pf6N2E2_1133at 1329.731 kb on - strand, within Pf6N2E2_1133at 1329.731 kb on - strand, within Pf6N2E2_1133at 1329.731 kb on - strand, within Pf6N2E2_1133at 1329.940 kb on - strand, within Pf6N2E2_1133at 1330.008 kb on - strand, within Pf6N2E2_1133at 1330.008 kb on - strand, within Pf6N2E2_1133at 1330.018 kb on + strand, within Pf6N2E2_1133at 1330.018 kb on + strand, within Pf6N2E2_1133at 1330.019 kb on - strand, within Pf6N2E2_1133at 1330.206 kb on + strand, within Pf6N2E2_1133at 1330.301 kb on - strand, within Pf6N2E2_1133at 1330.301 kb on - strand, within Pf6N2E2_1133at 1330.301 kb on - strand, within Pf6N2E2_1133at 1330.306 kb on + strand, within Pf6N2E2_1133at 1330.307 kb on - strand, within Pf6N2E2_1133at 1330.361 kb on - strand, within Pf6N2E2_1133at 1330.361 kb on - strand, within Pf6N2E2_1133at 1330.417 kb on + strand, within Pf6N2E2_1133at 1330.418 kb on - strand, within Pf6N2E2_1133at 1330.418 kb on - strand, within Pf6N2E2_1133at 1330.418 kb on - strand, within Pf6N2E2_1133at 1330.419 kb on + strand, within Pf6N2E2_1133at 1330.625 kb on - strand, within Pf6N2E2_1133at 1330.633 kb on + strand, within Pf6N2E2_1133at 1330.633 kb on + strand, within Pf6N2E2_1133at 1330.633 kb on + strand, within Pf6N2E2_1133at 1330.633 kb on + strand, within Pf6N2E2_1133at 1330.633 kb on + strand, within Pf6N2E2_1133at 1330.633 kb on + strand, within Pf6N2E2_1133at 1330.633 kb on + strand, within Pf6N2E2_1133at 1330.634 kb on - strand, within Pf6N2E2_1133at 1330.738 kb on + strand, within Pf6N2E2_1133at 1330.738 kb on + strand, within Pf6N2E2_1133at 1330.738 kb on + strand, within Pf6N2E2_1133at 1330.738 kb on + strand, within Pf6N2E2_1133at 1330.738 kb on + strand, within Pf6N2E2_1133at 1330.739 kb on - strand, within Pf6N2E2_1133at 1330.739 kb on - strand, within Pf6N2E2_1133at 1330.739 kb on - strand, within Pf6N2E2_1133at 1330.796 kb on - strand, within Pf6N2E2_1133at 1330.915 kb on + strand, within Pf6N2E2_1133at 1330.915 kb on + strand, within Pf6N2E2_1133at 1330.915 kb on + strand, within Pf6N2E2_1133at 1330.916 kb on - strand, within Pf6N2E2_1133at 1330.939 kb on - strand, within Pf6N2E2_1133at 1331.028 kb on - strand, within Pf6N2E2_1133at 1331.028 kb on - strand, within Pf6N2E2_1133at 1331.137 kb on + strandat 1331.138 kb on - strandat 1331.272 kb on + strandat 1331.950 kb on + strandat 1332.014 kb on - strandat 1332.026 kb on + strandat 1332.026 kb on + strandat 1332.140 kb on + strand, within Pf6N2E2_1135at 1332.140 kb on + strand, within Pf6N2E2_1135at 1332.140 kb on + strand, within Pf6N2E2_1135at 1332.140 kb on + strand, within Pf6N2E2_1135at 1332.141 kb on - strand, within Pf6N2E2_1135at 1332.141 kb on - strand, within Pf6N2E2_1135at 1332.141 kb on - strand, within Pf6N2E2_1135at 1332.182 kb on + strand, within Pf6N2E2_1135at 1332.222 kb on - strand, within Pf6N2E2_1135at 1332.222 kb on - strand, within Pf6N2E2_1135at 1332.222 kb on - strand, within Pf6N2E2_1135at 1332.228 kb on - strand, within Pf6N2E2_1135

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Per-strain Table

Position Strand Gene LocusTag Fraction arsenate 0.0005 M
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1,328,979 + -0.5
1,328,979 + +0.8
1,329,019 + +1.2
1,329,019 + +1.0
1,329,217 + Pf6N2E2_1133 0.14 -1.3
1,329,217 + Pf6N2E2_1133 0.14 -0.9
1,329,217 + Pf6N2E2_1133 0.14 +0.2
1,329,217 + Pf6N2E2_1133 0.14 -0.6
1,329,217 + Pf6N2E2_1133 0.14 -0.9
1,329,217 + Pf6N2E2_1133 0.14 +0.2
1,329,217 + Pf6N2E2_1133 0.14 -0.3
1,329,217 + Pf6N2E2_1133 0.14 -0.6
1,329,217 + Pf6N2E2_1133 0.14 -0.5
1,329,218 - Pf6N2E2_1133 0.14 +0.6
1,329,218 - Pf6N2E2_1133 0.14 +0.2
1,329,218 - Pf6N2E2_1133 0.14 +0.2
1,329,394 + Pf6N2E2_1133 0.21 -0.1
1,329,394 + Pf6N2E2_1133 0.21 +0.2
1,329,394 + Pf6N2E2_1133 0.21 +1.7
1,329,394 + Pf6N2E2_1133 0.21 +0.3
1,329,394 + Pf6N2E2_1133 0.21 +0.6
1,329,394 + Pf6N2E2_1133 0.21 +1.2
1,329,394 + Pf6N2E2_1133 0.21 +0.0
1,329,395 - Pf6N2E2_1133 0.21 +0.7
1,329,395 - Pf6N2E2_1133 0.21 -0.1
1,329,395 - Pf6N2E2_1133 0.21 +0.4
1,329,395 - Pf6N2E2_1133 0.21 +0.0
1,329,397 - Pf6N2E2_1133 0.21 +0.4
1,329,544 + Pf6N2E2_1133 0.27 -1.1
1,329,545 - Pf6N2E2_1133 0.28 +0.0
1,329,574 + Pf6N2E2_1133 0.29 -1.0
1,329,575 - Pf6N2E2_1133 0.29 -2.8
1,329,642 + Pf6N2E2_1133 0.32 +0.5
1,329,730 + Pf6N2E2_1133 0.35 -0.1
1,329,730 + Pf6N2E2_1133 0.35 -0.6
1,329,730 + Pf6N2E2_1133 0.35 -0.6
1,329,730 + Pf6N2E2_1133 0.35 -2.7
1,329,731 - Pf6N2E2_1133 0.35 -0.2
1,329,731 - Pf6N2E2_1133 0.35 -0.6
1,329,731 - Pf6N2E2_1133 0.35 +0.9
1,329,731 - Pf6N2E2_1133 0.35 -0.6
1,329,940 - Pf6N2E2_1133 0.44 -0.3
1,330,008 - Pf6N2E2_1133 0.47 -1.1
1,330,008 - Pf6N2E2_1133 0.47 -0.2
1,330,018 + Pf6N2E2_1133 0.47 +1.2
1,330,018 + Pf6N2E2_1133 0.47 -1.9
1,330,019 - Pf6N2E2_1133 0.47 -0.6
1,330,206 + Pf6N2E2_1133 0.55 -1.0
1,330,301 - Pf6N2E2_1133 0.59 -0.5
1,330,301 - Pf6N2E2_1133 0.59 +0.6
1,330,301 - Pf6N2E2_1133 0.59 +1.0
1,330,306 + Pf6N2E2_1133 0.59 -0.3
1,330,307 - Pf6N2E2_1133 0.59 -0.5
1,330,361 - Pf6N2E2_1133 0.61 -0.3
1,330,361 - Pf6N2E2_1133 0.61 -0.4
1,330,417 + Pf6N2E2_1133 0.63 +1.2
1,330,418 - Pf6N2E2_1133 0.64 -0.6
1,330,418 - Pf6N2E2_1133 0.64 +0.4
1,330,418 - Pf6N2E2_1133 0.64 -1.2
1,330,419 + Pf6N2E2_1133 0.64 +1.2
1,330,625 - Pf6N2E2_1133 0.72 -1.7
1,330,633 + Pf6N2E2_1133 0.72 +0.6
1,330,633 + Pf6N2E2_1133 0.72 +0.6
1,330,633 + Pf6N2E2_1133 0.72 +0.8
1,330,633 + Pf6N2E2_1133 0.72 -0.0
1,330,633 + Pf6N2E2_1133 0.72 +0.0
1,330,633 + Pf6N2E2_1133 0.72 -2.0
1,330,633 + Pf6N2E2_1133 0.72 +0.1
1,330,634 - Pf6N2E2_1133 0.72 +0.2
1,330,738 + Pf6N2E2_1133 0.77 +1.8
1,330,738 + Pf6N2E2_1133 0.77 -2.1
1,330,738 + Pf6N2E2_1133 0.77 -0.6
1,330,738 + Pf6N2E2_1133 0.77 +0.9
1,330,738 + Pf6N2E2_1133 0.77 +1.0
1,330,739 - Pf6N2E2_1133 0.77 -0.9
1,330,739 - Pf6N2E2_1133 0.77 -0.1
1,330,739 - Pf6N2E2_1133 0.77 -0.8
1,330,796 - Pf6N2E2_1133 0.79 -1.3
1,330,915 + Pf6N2E2_1133 0.84 +0.1
1,330,915 + Pf6N2E2_1133 0.84 +0.1
1,330,915 + Pf6N2E2_1133 0.84 +0.7
1,330,916 - Pf6N2E2_1133 0.84 +0.5
1,330,939 - Pf6N2E2_1133 0.85 -0.4
1,331,028 - Pf6N2E2_1133 0.89 -2.0
1,331,028 - Pf6N2E2_1133 0.89 +0.3
1,331,137 + +0.1
1,331,138 - -0.8
1,331,272 + +0.5
1,331,950 + -0.7
1,332,014 - -0.2
1,332,026 + +0.2
1,332,026 + +1.8
1,332,140 + Pf6N2E2_1135 0.24 +3.0
1,332,140 + Pf6N2E2_1135 0.24 +0.0
1,332,140 + Pf6N2E2_1135 0.24 +0.6
1,332,140 + Pf6N2E2_1135 0.24 -0.7
1,332,141 - Pf6N2E2_1135 0.24 -1.2
1,332,141 - Pf6N2E2_1135 0.24 -0.6
1,332,141 - Pf6N2E2_1135 0.24 +1.5
1,332,182 + Pf6N2E2_1135 0.33 -0.5
1,332,222 - Pf6N2E2_1135 0.41 -0.3
1,332,222 - Pf6N2E2_1135 0.41 +0.3
1,332,222 - Pf6N2E2_1135 0.41 +0.8
1,332,228 - Pf6N2E2_1135 0.42 +1.4

Or see this region's nucleotide sequence