Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04700

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
898,679	-		MMP_RS04695	0.38	-0.5
898,998	-		MMP_RS04695	0.70	-0.1
898,999	+		MMP_RS04695	0.70	+0.1
898,999	+		MMP_RS04695	0.70	-1.0
899,028	-		MMP_RS04695	0.73	-0.7
899,029	+		MMP_RS04695	0.73	-0.2
899,066	+		MMP_RS04695	0.76	-0.5
899,067	-		MMP_RS04695	0.76	+0.0
899,068	+		MMP_RS04695	0.77	-0.2
899,068	+		MMP_RS04695	0.77	-0.4
899,085	+		MMP_RS04695	0.78	-0.4
899,236	+				+0.2
899,245	+				-0.7
899,276	-				-0.8
899,355	-				-0.1
899,355	-				+0.1
899,366	-				+0.1
899,366	-				+0.1
899,366	-				-0.3
899,366	-				+0.3
899,367	+				-0.2
899,367	+				-1.0
899,368	-				+0.7
899,368	-				+0.0
899,368	-				+0.6
899,369	+				-0.2
899,375	-				-0.3
899,376	+				-0.5
899,376	+				-0.3
899,376	+				+0.5
899,385	-				-0.1
899,385	-				-0.3
899,385	-				+0.1
899,386	+				+0.2
899,386	+				+0.1
899,418	+				+0.1
899,418	+				+0.2
899,420	-				-0.3
899,558	-		MMP_RS04700	0.30	+0.3
899,559	+		MMP_RS04700	0.30	-0.2
899,564	-		MMP_RS04700	0.31	-0.0
899,565	+		MMP_RS04700	0.31	-0.3
899,571	-		MMP_RS04700	0.32	-0.1
899,576	-		MMP_RS04700	0.33	+0.1
899,581	-		MMP_RS04700	0.34	+0.3
899,582	+		MMP_RS04700	0.34	-0.4
899,693	+		MMP_RS04700	0.53	-0.7
899,778	-		MMP_RS04700	0.68	+0.1
899,779	+		MMP_RS04700	0.68	+0.2
899,799	+		MMP_RS04700	0.72	+1.1
899,799	+		MMP_RS04700	0.72	-0.2
899,804	-		MMP_RS04700	0.73	-0.1
899,805	+		MMP_RS04700	0.73	+0.0
899,820	+		MMP_RS04700	0.75	+0.4
899,824	-		MMP_RS04700	0.76	+0.7
899,825	+		MMP_RS04700	0.76	-0.1
899,865	+		MMP_RS04700	0.83	-2.2
899,865	+		MMP_RS04700	0.83	+0.3
899,912	-				-0.0
899,913	+				-0.5
899,917	-				+0.2
899,917	-				-0.3
899,918	+				-0.3
899,918	+				+0.4
900,074	+				-1.2
900,265	-				-0.9
900,298	-				-1.6
900,299	+				-2.1
900,299	+				-1.4
900,299	+				-3.3
900,299	+				-1.2
900,299	+				-1.3
900,299	+				-2.3
900,323	+				-1.2
900,464	-				-1.6
900,465	+				-1.5
900,501	-				-1.7
900,913	-				-1.8
900,914	+				-2.5
900,914	+				-1.8
900,914	+				-0.8
900,916	+				-1.9
900,939	-				-0.5
900,940	+				-0.7