Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04670

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04665 and MMP_RS04670 are separated by 301 nucleotidesMMP_RS04670 and MMP_RS04675 are separated by 9 nucleotidesMMP_RS04675 and MMP_RS04680 are separated by 29 nucleotides MMP_RS04665: MMP_RS04665 - SBBP repeat-containing protein, at 891,545 to 894,625 _RS04665 MMP_RS04670: MMP_RS04670 - selenouridine synthase SelU-like subunit, at 894,927 to 895,586 _RS04670 MMP_RS04675: MMP_RS04675 - selenouridine synthase SelU-like subunit, at 895,596 to 896,249 _RS04675 MMP_RS04680: MMP_RS04680 - NOG1 family protein, at 896,279 to 897,316 _RS04680 Position (kb) 894 895 896Strain fitness (log2 ratio) -1 0 1at 893.965 kb on + strand, within MMP_RS04665at 893.992 kb on + strand, within MMP_RS04665at 893.992 kb on + strand, within MMP_RS04665at 894.025 kb on - strand, within MMP_RS04665at 894.026 kb on + strand, within MMP_RS04665at 894.026 kb on + strand, within MMP_RS04665at 894.030 kb on - strand, within MMP_RS04665at 894.030 kb on - strand, within MMP_RS04665at 894.030 kb on - strand, within MMP_RS04665at 894.030 kb on - strand, within MMP_RS04665at 894.031 kb on + strand, within MMP_RS04665at 894.048 kb on - strand, within MMP_RS04665at 894.049 kb on + strand, within MMP_RS04665at 894.049 kb on + strand, within MMP_RS04665at 894.061 kb on - strand, within MMP_RS04665at 894.068 kb on - strand, within MMP_RS04665at 894.069 kb on + strand, within MMP_RS04665at 894.069 kb on + strand, within MMP_RS04665at 894.104 kb on + strand, within MMP_RS04665at 894.130 kb on - strand, within MMP_RS04665at 894.147 kb on - strand, within MMP_RS04665at 894.152 kb on - strand, within MMP_RS04665at 894.179 kb on + strand, within MMP_RS04665at 894.179 kb on + strand, within MMP_RS04665at 894.193 kb on - strand, within MMP_RS04665at 894.194 kb on + strand, within MMP_RS04665at 894.196 kb on + strand, within MMP_RS04665at 894.207 kb on - strand, within MMP_RS04665at 894.221 kb on - strand, within MMP_RS04665at 894.252 kb on - strand, within MMP_RS04665at 894.303 kb on - strand, within MMP_RS04665at 894.345 kb on - strandat 894.346 kb on + strandat 894.445 kb on + strandat 894.445 kb on + strandat 894.465 kb on - strandat 894.465 kb on - strandat 894.465 kb on - strandat 894.466 kb on + strandat 894.466 kb on + strandat 894.470 kb on + strandat 894.470 kb on + strandat 894.470 kb on + strandat 894.483 kb on - strandat 894.484 kb on + strandat 894.538 kb on - strandat 894.539 kb on + strandat 894.649 kb on - strandat 894.649 kb on - strandat 894.649 kb on - strandat 894.649 kb on - strandat 894.650 kb on + strandat 894.665 kb on + strandat 894.665 kb on + strandat 894.666 kb on - strandat 894.680 kb on - strandat 894.681 kb on + strandat 894.727 kb on + strandat 894.757 kb on - strandat 894.757 kb on - strandat 894.758 kb on + strandat 894.762 kb on + strandat 894.804 kb on - strandat 894.805 kb on + strandat 894.809 kb on - strandat 894.810 kb on + strandat 894.892 kb on - strandat 894.903 kb on - strandat 894.906 kb on - strandat 894.911 kb on - strandat 894.911 kb on - strandat 894.922 kb on - strandat 894.988 kb on - strandat 895.000 kb on + strand, within MMP_RS04670at 895.002 kb on + strand, within MMP_RS04670at 895.006 kb on - strand, within MMP_RS04670at 895.007 kb on + strand, within MMP_RS04670at 895.007 kb on + strand, within MMP_RS04670at 895.060 kb on + strand, within MMP_RS04670at 895.067 kb on + strand, within MMP_RS04670at 895.067 kb on + strand, within MMP_RS04670at 895.094 kb on - strand, within MMP_RS04670at 895.130 kb on - strand, within MMP_RS04670at 895.186 kb on - strand, within MMP_RS04670at 895.232 kb on - strand, within MMP_RS04670at 895.233 kb on + strand, within MMP_RS04670at 895.233 kb on + strand, within MMP_RS04670at 895.235 kb on + strand, within MMP_RS04670at 895.417 kb on + strand, within MMP_RS04670at 895.546 kb on + strandat 895.578 kb on + strandat 895.625 kb on - strandat 895.644 kb on + strandat 895.649 kb on + strandat 895.679 kb on + strand, within MMP_RS04675at 895.685 kb on + strand, within MMP_RS04675at 895.757 kb on - strand, within MMP_RS04675at 895.761 kb on + strand, within MMP_RS04675at 895.777 kb on - strand, within MMP_RS04675at 895.817 kb on - strand, within MMP_RS04675at 895.827 kb on - strand, within MMP_RS04675at 895.869 kb on + strand, within MMP_RS04675at 895.906 kb on - strand, within MMP_RS04675at 895.907 kb on + strand, within MMP_RS04675at 895.909 kb on - strand, within MMP_RS04675at 895.995 kb on - strand, within MMP_RS04675at 896.017 kb on + strand, within MMP_RS04675at 896.062 kb on - strand, within MMP_RS04675at 896.062 kb on - strand, within MMP_RS04675at 896.212 kb on - strandat 896.229 kb on - strandat 896.231 kb on - strandat 896.234 kb on - strandat 896.234 kb on - strandat 896.234 kb on - strandat 896.248 kb on + strandat 896.288 kb on - strandat 896.288 kb on - strandat 896.320 kb on - strandat 896.324 kb on - strandat 896.324 kb on - strandat 896.340 kb on + strandat 896.414 kb on + strandat 896.504 kb on + strandat 896.575 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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893,965 + MMP_RS04665 0.79 -0.4
893,992 + MMP_RS04665 0.79 -0.4
893,992 + MMP_RS04665 0.79 +0.1
894,025 - MMP_RS04665 0.80 +0.3
894,026 + MMP_RS04665 0.81 -0.4
894,026 + MMP_RS04665 0.81 +0.1
894,030 - MMP_RS04665 0.81 +0.6
894,030 - MMP_RS04665 0.81 +0.1
894,030 - MMP_RS04665 0.81 -0.0
894,030 - MMP_RS04665 0.81 -0.2
894,031 + MMP_RS04665 0.81 +0.4
894,048 - MMP_RS04665 0.81 +0.0
894,049 + MMP_RS04665 0.81 +0.4
894,049 + MMP_RS04665 0.81 -0.2
894,061 - MMP_RS04665 0.82 +0.6
894,068 - MMP_RS04665 0.82 +0.5
894,069 + MMP_RS04665 0.82 +0.2
894,069 + MMP_RS04665 0.82 +0.1
894,104 + MMP_RS04665 0.83 -0.2
894,130 - MMP_RS04665 0.84 +0.4
894,147 - MMP_RS04665 0.84 -0.3
894,152 - MMP_RS04665 0.85 +0.0
894,179 + MMP_RS04665 0.85 -0.2
894,179 + MMP_RS04665 0.85 +0.2
894,193 - MMP_RS04665 0.86 -0.2
894,194 + MMP_RS04665 0.86 +0.1
894,196 + MMP_RS04665 0.86 +0.1
894,207 - MMP_RS04665 0.86 -0.0
894,221 - MMP_RS04665 0.87 +0.0
894,252 - MMP_RS04665 0.88 -0.1
894,303 - MMP_RS04665 0.90 +0.0
894,345 - -0.3
894,346 + +0.4
894,445 + -0.0
894,445 + +0.1
894,465 - -0.6
894,465 - +0.2
894,465 - +0.4
894,466 + +0.5
894,466 + +0.5
894,470 + -0.2
894,470 + -0.0
894,470 + +0.5
894,483 - +0.3
894,484 + +0.7
894,538 - +0.4
894,539 + +0.1
894,649 - +0.3
894,649 - +1.5
894,649 - +0.1
894,649 - +0.3
894,650 + +0.1
894,665 + -0.2
894,665 + +0.4
894,666 - +0.2
894,680 - -0.1
894,681 + -0.1
894,727 + +0.0
894,757 - -0.1
894,757 - +0.4
894,758 + +0.1
894,762 + +0.1
894,804 - -0.1
894,805 + +0.1
894,809 - -0.0
894,810 + +0.2
894,892 - +0.3
894,903 - -0.1
894,906 - -0.6
894,911 - -0.6
894,911 - +0.5
894,922 - -0.4
894,988 - -0.3
895,000 + MMP_RS04670 0.11 +0.1
895,002 + MMP_RS04670 0.11 -0.5
895,006 - MMP_RS04670 0.12 -0.1
895,007 + MMP_RS04670 0.12 +0.9
895,007 + MMP_RS04670 0.12 -0.3
895,060 + MMP_RS04670 0.20 -0.5
895,067 + MMP_RS04670 0.21 -0.2
895,067 + MMP_RS04670 0.21 +0.0
895,094 - MMP_RS04670 0.25 +0.3
895,130 - MMP_RS04670 0.31 -0.3
895,186 - MMP_RS04670 0.39 +0.5
895,232 - MMP_RS04670 0.46 +0.3
895,233 + MMP_RS04670 0.46 -0.6
895,233 + MMP_RS04670 0.46 +0.3
895,235 + MMP_RS04670 0.47 -1.3
895,417 + MMP_RS04670 0.74 -0.2
895,546 + -0.1
895,578 + -0.5
895,625 - -0.1
895,644 + +0.3
895,649 + -0.3
895,679 + MMP_RS04675 0.13 -0.4
895,685 + MMP_RS04675 0.14 -0.6
895,757 - MMP_RS04675 0.25 -0.3
895,761 + MMP_RS04675 0.25 -0.5
895,777 - MMP_RS04675 0.28 +0.5
895,817 - MMP_RS04675 0.34 -0.2
895,827 - MMP_RS04675 0.35 +0.4
895,869 + MMP_RS04675 0.42 -0.3
895,906 - MMP_RS04675 0.47 -0.9
895,907 + MMP_RS04675 0.48 +0.3
895,909 - MMP_RS04675 0.48 -0.2
895,995 - MMP_RS04675 0.61 +0.0
896,017 + MMP_RS04675 0.64 -0.1
896,062 - MMP_RS04675 0.71 +0.2
896,062 - MMP_RS04675 0.71 -0.4
896,212 - -0.5
896,229 - +0.0
896,231 - -0.2
896,234 - -0.0
896,234 - -0.2
896,234 - +0.0
896,248 + -0.6
896,288 - -0.5
896,288 - -0.6
896,320 - +0.0
896,324 - +0.2
896,324 - -0.3
896,340 + -0.4
896,414 + -0.9
896,504 + -0.9
896,575 + -0.3

Or see this region's nucleotide sequence