Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04595

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04590 and MMP_RS04595 are separated by 30 nucleotidesMMP_RS04595 and MMP_RS04600 are separated by 109 nucleotides MMP_RS04590: MMP_RS04590 - hypothetical protein, at 876,371 to 877,336 _RS04590 MMP_RS04595: MMP_RS04595 - hypothetical protein, at 877,367 to 877,864 _RS04595 MMP_RS04600: MMP_RS04600 - tetratricopeptide repeat protein, at 877,974 to 879,140 _RS04600 Position (kb) 877 878Strain fitness (log2 ratio) -1 0 1at 876.407 kb on + strandat 876.501 kb on - strand, within MMP_RS04590at 876.501 kb on - strand, within MMP_RS04590at 876.502 kb on + strand, within MMP_RS04590at 876.506 kb on - strand, within MMP_RS04590at 876.507 kb on + strand, within MMP_RS04590at 876.507 kb on + strand, within MMP_RS04590at 876.516 kb on - strand, within MMP_RS04590at 876.527 kb on - strand, within MMP_RS04590at 876.528 kb on + strand, within MMP_RS04590at 876.542 kb on + strand, within MMP_RS04590at 876.546 kb on + strand, within MMP_RS04590at 876.560 kb on - strand, within MMP_RS04590at 876.560 kb on - strand, within MMP_RS04590at 876.607 kb on - strand, within MMP_RS04590at 876.608 kb on + strand, within MMP_RS04590at 876.632 kb on + strand, within MMP_RS04590at 876.659 kb on - strand, within MMP_RS04590at 876.687 kb on + strand, within MMP_RS04590at 876.691 kb on - strand, within MMP_RS04590at 876.955 kb on + strand, within MMP_RS04590at 876.998 kb on - strand, within MMP_RS04590at 877.043 kb on - strand, within MMP_RS04590at 877.120 kb on + strand, within MMP_RS04590at 877.133 kb on + strand, within MMP_RS04590at 877.133 kb on + strand, within MMP_RS04590at 877.133 kb on + strand, within MMP_RS04590at 877.138 kb on - strand, within MMP_RS04590at 877.170 kb on - strand, within MMP_RS04590at 877.174 kb on - strand, within MMP_RS04590at 877.209 kb on + strand, within MMP_RS04590at 877.233 kb on + strand, within MMP_RS04590at 877.272 kb on + strandat 877.363 kb on - strandat 877.482 kb on + strand, within MMP_RS04595at 877.539 kb on - strand, within MMP_RS04595at 877.550 kb on - strand, within MMP_RS04595at 877.560 kb on + strand, within MMP_RS04595at 877.571 kb on - strand, within MMP_RS04595at 877.743 kb on + strand, within MMP_RS04595at 877.766 kb on + strand, within MMP_RS04595at 877.846 kb on + strandat 877.846 kb on + strandat 877.895 kb on - strandat 877.910 kb on - strandat 877.915 kb on - strandat 877.957 kb on - strandat 877.960 kb on - strandat 877.994 kb on - strandat 877.995 kb on + strandat 877.995 kb on + strandat 877.997 kb on - strandat 878.013 kb on - strandat 878.013 kb on - strandat 878.013 kb on - strandat 878.027 kb on + strandat 878.066 kb on + strandat 878.067 kb on - strandat 878.118 kb on + strand, within MMP_RS04600at 878.118 kb on + strand, within MMP_RS04600at 878.137 kb on + strand, within MMP_RS04600at 878.137 kb on + strand, within MMP_RS04600at 878.169 kb on - strand, within MMP_RS04600at 878.169 kb on - strand, within MMP_RS04600at 878.171 kb on - strand, within MMP_RS04600at 878.171 kb on - strand, within MMP_RS04600at 878.172 kb on + strand, within MMP_RS04600at 878.173 kb on - strand, within MMP_RS04600at 878.182 kb on - strand, within MMP_RS04600at 878.338 kb on - strand, within MMP_RS04600at 878.339 kb on + strand, within MMP_RS04600at 878.354 kb on + strand, within MMP_RS04600at 878.373 kb on - strand, within MMP_RS04600at 878.373 kb on - strand, within MMP_RS04600at 878.373 kb on - strand, within MMP_RS04600at 878.374 kb on + strand, within MMP_RS04600at 878.409 kb on - strand, within MMP_RS04600at 878.410 kb on + strand, within MMP_RS04600at 878.513 kb on - strand, within MMP_RS04600at 878.524 kb on + strand, within MMP_RS04600at 878.528 kb on + strand, within MMP_RS04600at 878.531 kb on - strand, within MMP_RS04600at 878.532 kb on + strand, within MMP_RS04600at 878.532 kb on + strand, within MMP_RS04600at 878.709 kb on + strand, within MMP_RS04600at 878.709 kb on + strand, within MMP_RS04600at 878.710 kb on - strand, within MMP_RS04600at 878.711 kb on + strand, within MMP_RS04600at 878.711 kb on + strand, within MMP_RS04600at 878.728 kb on + strand, within MMP_RS04600at 878.732 kb on - strand, within MMP_RS04600at 878.732 kb on - strand, within MMP_RS04600at 878.735 kb on - strand, within MMP_RS04600at 878.735 kb on - strand, within MMP_RS04600at 878.736 kb on + strand, within MMP_RS04600at 878.738 kb on - strand, within MMP_RS04600at 878.738 kb on - strand, within MMP_RS04600at 878.739 kb on + strand, within MMP_RS04600at 878.740 kb on - strand, within MMP_RS04600at 878.741 kb on + strand, within MMP_RS04600at 878.741 kb on + strand, within MMP_RS04600at 878.765 kb on - strand, within MMP_RS04600at 878.776 kb on + strand, within MMP_RS04600at 878.776 kb on + strand, within MMP_RS04600at 878.779 kb on - strand, within MMP_RS04600at 878.779 kb on - strand, within MMP_RS04600

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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876,407 + +0.1
876,501 - MMP_RS04590 0.13 +0.2
876,501 - MMP_RS04590 0.13 -0.2
876,502 + MMP_RS04590 0.14 -0.5
876,506 - MMP_RS04590 0.14 +0.1
876,507 + MMP_RS04590 0.14 -0.1
876,507 + MMP_RS04590 0.14 -0.0
876,516 - MMP_RS04590 0.15 +0.0
876,527 - MMP_RS04590 0.16 +0.2
876,528 + MMP_RS04590 0.16 -0.0
876,542 + MMP_RS04590 0.18 -0.6
876,546 + MMP_RS04590 0.18 +0.4
876,560 - MMP_RS04590 0.20 -0.1
876,560 - MMP_RS04590 0.20 -0.2
876,607 - MMP_RS04590 0.24 -0.1
876,608 + MMP_RS04590 0.25 -0.4
876,632 + MMP_RS04590 0.27 +0.0
876,659 - MMP_RS04590 0.30 +0.2
876,687 + MMP_RS04590 0.33 -0.2
876,691 - MMP_RS04590 0.33 -0.4
876,955 + MMP_RS04590 0.60 -0.0
876,998 - MMP_RS04590 0.65 -0.1
877,043 - MMP_RS04590 0.70 -0.2
877,120 + MMP_RS04590 0.78 +0.1
877,133 + MMP_RS04590 0.79 +0.0
877,133 + MMP_RS04590 0.79 -0.1
877,133 + MMP_RS04590 0.79 -0.2
877,138 - MMP_RS04590 0.79 -0.2
877,170 - MMP_RS04590 0.83 -0.1
877,174 - MMP_RS04590 0.83 -0.1
877,209 + MMP_RS04590 0.87 -0.1
877,233 + MMP_RS04590 0.89 +0.2
877,272 + -0.1
877,363 - +0.1
877,482 + MMP_RS04595 0.23 -0.1
877,539 - MMP_RS04595 0.35 -0.4
877,550 - MMP_RS04595 0.37 +0.5
877,560 + MMP_RS04595 0.39 -0.2
877,571 - MMP_RS04595 0.41 -0.3
877,743 + MMP_RS04595 0.76 -0.0
877,766 + MMP_RS04595 0.80 -0.5
877,846 + +0.1
877,846 + +0.1
877,895 - -0.0
877,910 - -0.1
877,915 - +0.4
877,957 - -0.4
877,960 - -0.3
877,994 - +0.6
877,995 + +0.2
877,995 + +0.2
877,997 - -0.4
878,013 - -0.6
878,013 - +0.1
878,013 - +0.3
878,027 + -1.0
878,066 + +0.3
878,067 - +0.1
878,118 + MMP_RS04600 0.12 -0.0
878,118 + MMP_RS04600 0.12 -0.4
878,137 + MMP_RS04600 0.14 +0.0
878,137 + MMP_RS04600 0.14 -0.1
878,169 - MMP_RS04600 0.17 +0.3
878,169 - MMP_RS04600 0.17 -0.5
878,171 - MMP_RS04600 0.17 -0.3
878,171 - MMP_RS04600 0.17 +0.0
878,172 + MMP_RS04600 0.17 -0.3
878,173 - MMP_RS04600 0.17 +0.1
878,182 - MMP_RS04600 0.18 +0.0
878,338 - MMP_RS04600 0.31 -0.2
878,339 + MMP_RS04600 0.31 -0.5
878,354 + MMP_RS04600 0.33 -0.0
878,373 - MMP_RS04600 0.34 -0.4
878,373 - MMP_RS04600 0.34 +0.2
878,373 - MMP_RS04600 0.34 -0.6
878,374 + MMP_RS04600 0.34 -0.3
878,409 - MMP_RS04600 0.37 +0.1
878,410 + MMP_RS04600 0.37 +0.1
878,513 - MMP_RS04600 0.46 +0.1
878,524 + MMP_RS04600 0.47 +0.3
878,528 + MMP_RS04600 0.47 +0.3
878,531 - MMP_RS04600 0.48 +0.1
878,532 + MMP_RS04600 0.48 -0.2
878,532 + MMP_RS04600 0.48 -0.0
878,709 + MMP_RS04600 0.63 -0.6
878,709 + MMP_RS04600 0.63 +0.0
878,710 - MMP_RS04600 0.63 -0.2
878,711 + MMP_RS04600 0.63 +0.7
878,711 + MMP_RS04600 0.63 +0.1
878,728 + MMP_RS04600 0.65 +0.5
878,732 - MMP_RS04600 0.65 +0.0
878,732 - MMP_RS04600 0.65 +0.4
878,735 - MMP_RS04600 0.65 -0.2
878,735 - MMP_RS04600 0.65 -0.6
878,736 + MMP_RS04600 0.65 -0.2
878,738 - MMP_RS04600 0.65 -0.3
878,738 - MMP_RS04600 0.65 +0.0
878,739 + MMP_RS04600 0.66 +0.0
878,740 - MMP_RS04600 0.66 -0.4
878,741 + MMP_RS04600 0.66 +1.6
878,741 + MMP_RS04600 0.66 -0.0
878,765 - MMP_RS04600 0.68 +0.1
878,776 + MMP_RS04600 0.69 -0.2
878,776 + MMP_RS04600 0.69 -0.4
878,779 - MMP_RS04600 0.69 +0.1
878,779 - MMP_RS04600 0.69 +0.3

Or see this region's nucleotide sequence