Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03730 and MMP_RS03735 are separated by 431 nucleotides MMP_RS03735 and MMP_RS03740 overlap by 1 nucleotides MMP_RS03740 and MMP_RS03745 are separated by 10 nucleotides
MMP_RS03730: MMP_RS03730 - ABC transporter substrate-binding protein, at 705,074 to 705,820
_RS03730
MMP_RS03735: MMP_RS03735 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 706,252 to 707,988
_RS03735
MMP_RS03740: MMP_RS03740 - indolepyruvate oxidoreductase subunit beta, at 707,988 to 708,554
_RS03740
MMP_RS03745: MMP_RS03745 - phenylacetate--CoA ligase, at 708,565 to 709,863
_RS03745
Position (kb) 706
707
708 Strain fitness (log2 ratio) -1
0
1 at 705.272 kb on + strand, within MMP_RS03730 at 705.306 kb on + strand, within MMP_RS03730 at 705.315 kb on + strand, within MMP_RS03730 at 705.407 kb on - strand, within MMP_RS03730 at 705.419 kb on - strand, within MMP_RS03730 at 705.420 kb on + strand, within MMP_RS03730 at 705.560 kb on - strand, within MMP_RS03730 at 705.565 kb on - strand, within MMP_RS03730 at 705.626 kb on - strand, within MMP_RS03730 at 705.642 kb on + strand, within MMP_RS03730 at 705.642 kb on + strand, within MMP_RS03730 at 705.682 kb on - strand, within MMP_RS03730 at 705.689 kb on + strand, within MMP_RS03730 at 705.732 kb on - strand, within MMP_RS03730 at 705.739 kb on - strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.763 kb on - strand at 705.763 kb on - strand at 705.767 kb on - strand at 705.767 kb on - strand at 705.767 kb on - strand at 705.767 kb on - strand at 705.767 kb on - strand at 705.768 kb on + strand at 705.768 kb on + strand at 705.798 kb on - strand at 705.876 kb on - strand at 705.876 kb on - strand at 705.876 kb on - strand at 705.877 kb on + strand at 705.881 kb on + strand at 705.881 kb on + strand at 705.886 kb on - strand at 705.907 kb on + strand at 705.910 kb on + strand at 705.911 kb on - strand at 705.911 kb on - strand at 705.911 kb on - strand at 705.912 kb on + strand at 705.912 kb on + strand at 705.912 kb on + strand at 705.913 kb on - strand at 706.009 kb on - strand at 706.011 kb on - strand at 706.013 kb on - strand at 706.016 kb on + strand at 706.068 kb on - strand at 706.113 kb on - strand at 706.114 kb on + strand at 706.119 kb on - strand at 706.120 kb on + strand at 706.120 kb on + strand at 706.138 kb on + strand at 706.138 kb on + strand at 706.171 kb on - strand at 706.172 kb on + strand at 706.173 kb on - strand at 706.531 kb on + strand, within MMP_RS03735 at 706.728 kb on - strand, within MMP_RS03735 at 706.788 kb on + strand, within MMP_RS03735 at 706.821 kb on + strand, within MMP_RS03735 at 706.944 kb on - strand, within MMP_RS03735 at 706.945 kb on + strand, within MMP_RS03735 at 706.947 kb on - strand, within MMP_RS03735 at 706.963 kb on - strand, within MMP_RS03735 at 706.963 kb on - strand, within MMP_RS03735 at 706.965 kb on - strand, within MMP_RS03735 at 706.965 kb on - strand, within MMP_RS03735 at 706.965 kb on - strand, within MMP_RS03735 at 706.965 kb on - strand, within MMP_RS03735 at 706.965 kb on - strand, within MMP_RS03735 at 706.965 kb on - strand, within MMP_RS03735 at 706.965 kb on - strand, within MMP_RS03735 at 706.966 kb on + strand, within MMP_RS03735 at 707.079 kb on + strand, within MMP_RS03735 at 707.302 kb on + strand, within MMP_RS03735 at 707.392 kb on + strand, within MMP_RS03735 at 707.969 kb on - strand at 707.969 kb on - strand at 707.970 kb on + strand at 707.970 kb on + strand at 707.981 kb on - strand at 708.133 kb on + strand, within MMP_RS03740 at 708.226 kb on + strand, within MMP_RS03740 at 708.263 kb on + strand, within MMP_RS03740 at 708.292 kb on - strand, within MMP_RS03740 at 708.413 kb on + strand, within MMP_RS03740 at 708.553 kb on + strand at 708.582 kb on - strand at 708.624 kb on - strand at 708.646 kb on + strand at 708.656 kb on + strand at 708.750 kb on - strand, within MMP_RS03745 at 708.792 kb on + strand, within MMP_RS03745 at 708.864 kb on + strand, within MMP_RS03745
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 705,272 + MMP_RS03730 0.27 +0.0 705,306 + MMP_RS03730 0.31 +0.0 705,315 + MMP_RS03730 0.32 +0.2 705,407 - MMP_RS03730 0.45 +0.2 705,419 - MMP_RS03730 0.46 +0.0 705,420 + MMP_RS03730 0.46 -0.0 705,560 - MMP_RS03730 0.65 +0.4 705,565 - MMP_RS03730 0.66 +0.4 705,626 - MMP_RS03730 0.74 -0.1 705,642 + MMP_RS03730 0.76 -0.3 705,642 + MMP_RS03730 0.76 +0.2 705,682 - MMP_RS03730 0.81 +0.1 705,689 + MMP_RS03730 0.82 -0.1 705,732 - MMP_RS03730 0.88 +0.0 705,739 - MMP_RS03730 0.89 -0.2 705,745 + MMP_RS03730 0.90 -0.1 705,745 + MMP_RS03730 0.90 -0.1 705,745 + MMP_RS03730 0.90 -0.0 705,745 + MMP_RS03730 0.90 +0.3 705,745 + MMP_RS03730 0.90 -0.4 705,745 + MMP_RS03730 0.90 +0.5 705,763 - +0.3 705,763 - -0.2 705,767 - -0.1 705,767 - -0.2 705,767 - +0.4 705,767 - -0.1 705,767 - +1.7 705,768 + -0.3 705,768 + +0.0 705,798 - +0.3 705,876 - +0.3 705,876 - -0.0 705,876 - +0.1 705,877 + -0.2 705,881 + +0.8 705,881 + -0.4 705,886 - -0.0 705,907 + +0.5 705,910 + -0.1 705,911 - +0.4 705,911 - -0.2 705,911 - -0.3 705,912 + -0.4 705,912 + +0.3 705,912 + -0.0 705,913 - +0.4 706,009 - -0.2 706,011 - -0.1 706,013 - +0.1 706,016 + -0.0 706,068 - -0.2 706,113 - +0.2 706,114 + -0.2 706,119 - +0.4 706,120 + +0.1 706,120 + -0.2 706,138 + -0.1 706,138 + +0.2 706,171 - +0.2 706,172 + +0.3 706,173 - -0.2 706,531 + MMP_RS03735 0.16 +0.1 706,728 - MMP_RS03735 0.27 +0.1 706,788 + MMP_RS03735 0.31 -0.3 706,821 + MMP_RS03735 0.33 -0.4 706,944 - MMP_RS03735 0.40 +0.4 706,945 + MMP_RS03735 0.40 -0.7 706,947 - MMP_RS03735 0.40 +0.0 706,963 - MMP_RS03735 0.41 -0.3 706,963 - MMP_RS03735 0.41 -0.1 706,965 - MMP_RS03735 0.41 +0.2 706,965 - MMP_RS03735 0.41 -0.0 706,965 - MMP_RS03735 0.41 +0.4 706,965 - MMP_RS03735 0.41 +0.2 706,965 - MMP_RS03735 0.41 -0.7 706,965 - MMP_RS03735 0.41 -0.0 706,965 - MMP_RS03735 0.41 +0.1 706,966 + MMP_RS03735 0.41 +0.3 707,079 + MMP_RS03735 0.48 -0.1 707,302 + MMP_RS03735 0.60 -0.1 707,392 + MMP_RS03735 0.66 +0.1 707,969 - -0.2 707,969 - +0.4 707,970 + +0.2 707,970 + -0.2 707,981 - +0.1 708,133 + MMP_RS03740 0.26 -0.1 708,226 + MMP_RS03740 0.42 +0.4 708,263 + MMP_RS03740 0.49 -0.0 708,292 - MMP_RS03740 0.54 -0.1 708,413 + MMP_RS03740 0.75 +0.1 708,553 + +0.3 708,582 - -0.3 708,624 - -0.2 708,646 + -0.0 708,656 + +0.7 708,750 - MMP_RS03745 0.14 +0.1 708,792 + MMP_RS03745 0.17 +1.1 708,864 + MMP_RS03745 0.23 +0.1
Or see this region's nucleotide sequence