Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03455 and MMP_RS03460 are separated by 91 nucleotides MMP_RS03460 and MMP_RS03465 are separated by 41 nucleotides MMP_RS03465 and MMP_RS03470 are separated by 383 nucleotides
MMP_RS03455: MMP_RS03455 - radical SAM protein, at 648,045 to 648,938
_RS03455
MMP_RS03460: MMP_RS03460 - U32 family peptidase, at 649,030 to 650,241
_RS03460
MMP_RS03465: MMP_RS03465 - adenine phosphoribosyltransferase, at 650,283 to 650,801
_RS03465
MMP_RS03470: MMP_RS03470 - phosphoadenosine phosphosulfate reductase family protein, at 651,185 to 652,060
_RS03470
Position (kb) 649
650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 648.086 kb on - strand at 648.087 kb on + strand at 648.117 kb on - strand at 648.186 kb on + strand at 648.261 kb on - strand at 648.262 kb on + strand at 648.262 kb on + strand at 648.508 kb on + strand at 648.718 kb on - strand at 648.902 kb on - strand at 648.903 kb on + strand at 648.905 kb on - strand at 648.927 kb on + strand at 649.014 kb on - strand at 649.019 kb on - strand at 649.032 kb on + strand at 649.042 kb on - strand at 649.043 kb on + strand at 649.043 kb on + strand at 649.050 kb on + strand at 649.116 kb on - strand at 649.173 kb on - strand, within MMP_RS03460 at 649.173 kb on - strand, within MMP_RS03460 at 649.222 kb on + strand, within MMP_RS03460 at 649.252 kb on + strand, within MMP_RS03460 at 649.339 kb on + strand, within MMP_RS03460 at 649.367 kb on - strand, within MMP_RS03460 at 649.405 kb on - strand, within MMP_RS03460 at 649.424 kb on - strand, within MMP_RS03460 at 649.425 kb on + strand, within MMP_RS03460 at 649.485 kb on + strand, within MMP_RS03460 at 649.535 kb on + strand, within MMP_RS03460 at 649.693 kb on + strand, within MMP_RS03460 at 649.696 kb on - strand, within MMP_RS03460 at 649.768 kb on - strand, within MMP_RS03460 at 649.769 kb on + strand, within MMP_RS03460 at 650.187 kb on - strand at 650.311 kb on + strand at 650.325 kb on - strand at 650.369 kb on - strand, within MMP_RS03465 at 650.805 kb on + strand at 650.900 kb on - strand at 650.901 kb on + strand at 650.904 kb on - strand at 650.905 kb on + strand at 650.908 kb on + strand at 650.908 kb on + strand at 650.919 kb on - strand at 650.922 kb on + strand at 650.925 kb on + strand at 650.930 kb on + strand at 650.960 kb on + strand at 650.978 kb on - strand at 651.003 kb on - strand at 651.003 kb on - strand at 651.003 kb on - strand at 651.004 kb on + strand at 651.042 kb on - strand at 651.102 kb on - strand at 651.139 kb on + strand at 651.147 kb on + strand at 651.163 kb on - strand at 651.170 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 648,086 - -0.4 648,087 + -0.7 648,117 - -0.0 648,186 + -2.4 648,261 - -0.1 648,262 + -1.7 648,262 + -0.6 648,508 + -1.7 648,718 - -2.9 648,902 - -1.7 648,903 + -1.5 648,905 - -0.2 648,927 + -0.5 649,014 - +0.4 649,019 - -0.2 649,032 + +0.4 649,042 - -0.0 649,043 + +0.0 649,043 + +0.1 649,050 + -0.2 649,116 - -0.4 649,173 - MMP_RS03460 0.12 -0.1 649,173 - MMP_RS03460 0.12 -0.7 649,222 + MMP_RS03460 0.16 +0.0 649,252 + MMP_RS03460 0.18 +0.0 649,339 + MMP_RS03460 0.25 +0.1 649,367 - MMP_RS03460 0.28 -0.0 649,405 - MMP_RS03460 0.31 +0.3 649,424 - MMP_RS03460 0.33 -0.5 649,425 + MMP_RS03460 0.33 +0.1 649,485 + MMP_RS03460 0.38 -0.1 649,535 + MMP_RS03460 0.42 +0.6 649,693 + MMP_RS03460 0.55 +0.1 649,696 - MMP_RS03460 0.55 +0.5 649,768 - MMP_RS03460 0.61 +0.2 649,769 + MMP_RS03460 0.61 +0.7 650,187 - +0.2 650,311 + -0.1 650,325 - +0.3 650,369 - MMP_RS03465 0.17 +0.3 650,805 + +0.0 650,900 - +0.3 650,901 + +0.1 650,904 - +0.3 650,905 + -0.0 650,908 + -0.4 650,908 + +0.3 650,919 - -0.5 650,922 + -0.1 650,925 + -0.0 650,930 + +0.1 650,960 + -0.5 650,978 - +0.5 651,003 - +0.3 651,003 - -0.1 651,003 - +0.2 651,004 + +0.6 651,042 - -0.1 651,102 - +0.2 651,139 + +0.3 651,147 + -0.4 651,163 - -0.7 651,170 - -0.3
Or see this region's nucleotide sequence