Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07945

Experiment: casaminos 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos 2 mg/mL
1,737,612	+		LRK54_RS07940	0.15	+0.3
1,737,612	+		LRK54_RS07940	0.15	+0.2
1,737,613	-		LRK54_RS07940	0.15	+0.9
1,737,613	-		LRK54_RS07940	0.15	+1.0
1,737,714	+		LRK54_RS07940	0.25	+0.8
1,737,714	+		LRK54_RS07940	0.25	+0.9
1,737,714	+		LRK54_RS07940	0.25	+0.3
1,737,714	+		LRK54_RS07940	0.25	+0.9
1,737,714	+		LRK54_RS07940	0.25	+0.3
1,737,714	+		LRK54_RS07940	0.25	-3.2
1,737,714	+		LRK54_RS07940	0.25	+0.3
1,737,714	+		LRK54_RS07940	0.25	+0.8
1,737,714	+		LRK54_RS07940	0.25	-0.6
1,737,714	+		LRK54_RS07940	0.25	+1.1
1,737,714	+		LRK54_RS07940	0.25	+0.2
1,737,714	+		LRK54_RS07940	0.25	+0.7
1,737,715	-		LRK54_RS07940	0.25	+0.2
1,737,715	-		LRK54_RS07940	0.25	+1.2
1,737,715	-		LRK54_RS07940	0.25	+0.9
1,737,715	-		LRK54_RS07940	0.25	+1.3
1,737,715	-		LRK54_RS07940	0.25	+1.0
1,737,715	-		LRK54_RS07940	0.25	+1.0
1,737,715	-		LRK54_RS07940	0.25	+2.8
1,737,715	-		LRK54_RS07940	0.25	+0.8
1,737,715	-		LRK54_RS07940	0.25	+1.3
1,737,824	-		LRK54_RS07940	0.36	+0.8
1,737,824	-		LRK54_RS07940	0.36	+0.6
1,737,879	+		LRK54_RS07940	0.41	+0.8
1,737,879	+		LRK54_RS07940	0.41	-0.3
1,737,879	+		LRK54_RS07940	0.41	+0.6
1,737,879	+		LRK54_RS07940	0.41	+0.8
1,737,879	+		LRK54_RS07940	0.41	-0.7
1,737,880	-		LRK54_RS07940	0.41	+0.3
1,737,880	-		LRK54_RS07940	0.41	+0.6
1,737,880	-		LRK54_RS07940	0.41	+0.3
1,737,885	+		LRK54_RS07940	0.41	+0.5
1,737,885	+		LRK54_RS07940	0.41	+2.8
1,737,885	+		LRK54_RS07940	0.41	+1.1
1,737,885	+		LRK54_RS07940	0.41	-0.3
1,737,885	+		LRK54_RS07940	0.41	+0.6
1,737,885	+		LRK54_RS07940	0.41	+0.3
1,737,885	+		LRK54_RS07940	0.41	-0.9
1,737,885	+		LRK54_RS07940	0.41	-0.1
1,737,885	+		LRK54_RS07940	0.41	+0.6
1,737,885	+		LRK54_RS07940	0.41	+0.8
1,737,886	-		LRK54_RS07940	0.41	+1.0
1,737,886	-		LRK54_RS07940	0.41	+0.8
1,737,886	-		LRK54_RS07940	0.41	+1.1
1,737,886	-		LRK54_RS07940	0.41	+0.0
1,737,886	-		LRK54_RS07940	0.41	+0.6
1,737,886	-		LRK54_RS07940	0.41	+0.4
1,738,131	+		LRK54_RS07940	0.65	+0.8
1,738,131	+		LRK54_RS07940	0.65	-0.1
1,738,131	+		LRK54_RS07940	0.65	+1.0
1,738,131	+		LRK54_RS07940	0.65	+0.6
1,738,132	-		LRK54_RS07940	0.65	+1.1
1,738,132	-		LRK54_RS07940	0.65	+1.2
1,738,635	+		LRK54_RS07945	0.19	+0.5
1,738,745	+		LRK54_RS07945	0.34	+0.0
1,738,745	+		LRK54_RS07945	0.34	+0.6
1,738,746	-		LRK54_RS07945	0.35	+1.2
1,738,790	+		LRK54_RS07945	0.41	+1.1
1,738,790	+		LRK54_RS07945	0.41	+1.0
1,738,790	+		LRK54_RS07945	0.41	+0.5
1,738,791	-		LRK54_RS07945	0.41	+0.4
1,738,791	-		LRK54_RS07945	0.41	+1.2
1,738,791	-		LRK54_RS07945	0.41	+0.4
1,738,791	-		LRK54_RS07945	0.41	+0.4
1,738,883	+		LRK54_RS07945	0.54	+0.7
1,738,884	-		LRK54_RS07945	0.54	-0.1
1,738,884	-		LRK54_RS07945	0.54	+0.6
1,738,884	-		LRK54_RS07945	0.54	+0.6
1,738,884	-		LRK54_RS07945	0.54	+0.6
1,738,890	-		LRK54_RS07945	0.55	+0.9
1,738,890	-		LRK54_RS07945	0.55	+0.1
1,738,890	-		LRK54_RS07945	0.55	+0.7
1,738,890	-		LRK54_RS07945	0.55	+0.8
1,738,914	+		LRK54_RS07945	0.58	+0.6
1,738,914	+		LRK54_RS07945	0.58	+0.2
1,738,914	+		LRK54_RS07945	0.58	-0.8
1,738,914	+		LRK54_RS07945	0.58	+0.5
1,738,914	+		LRK54_RS07945	0.58	-1.1
1,738,914	+		LRK54_RS07945	0.58	+0.4
1,738,914	+		LRK54_RS07945	0.58	+1.4
1,738,914	+		LRK54_RS07945	0.58	+1.1
1,738,914	+		LRK54_RS07945	0.58	+1.0
1,738,915	-		LRK54_RS07945	0.59	+1.9
1,738,915	-		LRK54_RS07945	0.59	+0.6
1,738,915	-		LRK54_RS07945	0.59	+1.6
1,738,915	-		LRK54_RS07945	0.59	+0.6
1,738,915	-		LRK54_RS07945	0.59	+1.3
1,738,915	-		LRK54_RS07945	0.59	+0.9
1,738,961	+		LRK54_RS07945	0.65	+1.5
1,738,961	+		LRK54_RS07945	0.65	+0.9
1,738,961	+		LRK54_RS07945	0.65	-0.6
1,738,961	+		LRK54_RS07945	0.65	+0.3
1,738,961	+		LRK54_RS07945	0.65	+0.2
1,738,962	-		LRK54_RS07945	0.65	+0.9
1,738,962	-		LRK54_RS07945	0.65	+0.2
1,738,962	-		LRK54_RS07945	0.65	+1.6
1,738,962	-		LRK54_RS07945	0.65	+0.7
1,738,962	-		LRK54_RS07945	0.65	+2.8
1,738,962	-		LRK54_RS07945	0.65	+0.8
1,738,962	-		LRK54_RS07945	0.65	+1.1
1,739,030	+		LRK54_RS07945	0.75	+0.7
1,739,204	+				+0.0
1,739,204	+				-1.9
1,739,205	-				-0.2
1,739,218	+				+0.2
1,739,218	+				-1.1
1,739,218	+				-0.7
1,739,219	-				-1.1
1,739,254	+				-0.5
1,739,254	+				-0.9
1,739,254	+				+0.5
1,739,255	-				-0.8
1,739,255	-				+0.2
1,739,255	-				-0.6
1,739,255	-				-0.3
1,739,255	-				-1.1
1,739,255	-				-0.5
1,739,276	+				-0.3
1,739,276	+				+0.8
1,739,276	+				+0.1
1,739,276	+				-0.4
1,739,277	-				-2.2
1,739,277	-				-0.3
1,739,303	+				+0.4
1,739,303	+				+0.3
1,739,303	+				+0.6
1,739,303	+				+1.2
1,739,304	-				+0.2
1,739,304	-				-0.4
1,739,304	-				+0.7
1,739,415	+				-0.6
1,739,415	+				-0.7
1,739,415	+				-0.6
1,739,415	+				-1.2
1,739,415	+				-0.6
1,739,415	+				-0.4
1,739,416	-				+0.4
1,739,416	-				-0.5
1,739,416	-				-0.6
1,739,416	-				-1.1
1,739,416	-				+0.9
1,739,416	-				-1.2
1,739,416	-				+0.6
1,739,417	+				-1.2
1,739,417	+				-0.6
1,739,417	+				-1.2
1,739,417	+				-0.8
1,739,417	+				+0.2
1,739,418	-				-0.7
1,739,436	+				-0.6
1,739,437	-				+0.2
1,739,437	-				-0.5
1,739,439	+				-0.1
1,739,439	+				-0.4
1,739,439	+				-0.1
1,739,440	-				+0.2
1,739,440	-				+0.4
1,739,440	-				-0.2
1,739,440	-				-1.6
1,739,440	-				-0.1
1,739,440	-				+0.2
1,739,440	-				-0.0
1,739,469	+				-0.6
1,739,488	-				+0.1
1,739,544	-				+0.3
1,739,544	-				+0.4
1,739,617	+				-1.3
1,739,618	-				-0.1
1,739,618	-				-0.7
1,739,629	+				-0.4
1,739,629	+				-0.8
1,739,629	+				+0.3
1,739,631	+				-0.8
1,739,631	+				+0.2
1,739,631	+				-0.8
1,739,632	-				-0.2
1,739,632	-				-2.2
1,739,632	-				+0.4
1,739,632	-				+0.2
1,739,632	-				-1.6
1,739,632	-				+2.8
1,739,656	+				-0.9
1,739,656	+				-0.5
1,739,656	+				+0.8
1,739,656	+				+0.8
1,739,657	-				-0.5
1,739,657	-				+0.8
1,739,657	-				+1.4
1,739,657	-				-0.6
1,739,657	-				+1.0
1,739,660	+				-0.5
1,739,660	+				-1.8
1,739,660	+				-1.6
1,739,660	+				-0.5
1,739,661	-				-0.0
1,739,661	-				-0.5
1,739,661	-				-0.2
1,739,661	-				-0.8
1,739,661	-				-1.4
1,739,661	-				-2.2
1,739,661	-				+0.3
1,739,661	-				+0.5
1,739,661	-				+0.4
1,739,663	+				-1.3
1,739,663	+				-0.8
1,739,663	+				+0.4
1,739,663	+				+0.3
1,739,663	+				-2.9
1,739,663	+				+0.2
1,739,663	+				-1.1
1,739,663	+				-0.9
1,739,664	-				-0.1
1,739,664	-				-0.1
1,739,664	-				-1.1
1,739,715	+				+0.5
1,739,715	+				-0.3
1,739,774	+				-1.3
1,739,775	-				-0.1
1,739,775	-				-0.2
1,739,775	-				-0.8
1,739,775	-				-1.0
1,739,777	+				-0.4
1,739,778	-				+0.0
1,739,778	-				-0.1
1,739,778	-				-0.1
1,739,778	-				-0.9
1,739,778	-				+0.3
1,739,778	-				-1.8
1,739,815	+				+0.8
1,739,815	+				-1.8
1,739,816	-				-1.6
1,739,816	-				+0.6
1,739,817	+				-0.1
1,739,817	+				+1.8
1,739,817	+				-0.4
1,739,818	-				+0.2
1,739,821	+				-1.5
1,739,830	+				-0.3
1,739,831	-				-0.6
1,739,831	-				+0.1
1,739,831	-				-0.7
1,739,836	-				-1.9
1,739,836	-				+0.2
1,739,889	+				+0.4
1,739,889	+				-0.9
1,739,892	+				-1.7
1,739,893	-				-1.6
1,739,893	-				+0.1
1,739,900	-				-1.2
1,739,941	-				-0.6
1,739,950	+				-0.2
1,739,966	+				-0.1
1,739,967	-				-1.0
1,740,012	-				-0.6
1,740,012	-				-1.9
1,740,032	-				-1.7
1,740,095	+				-0.0
1,740,095	+				+0.2
1,740,095	+				+0.3
1,740,095	+				-0.5
1,740,095	+				+0.3
1,740,095	+				-1.5
1,740,095	+				-0.6
1,740,096	-				-1.2
1,740,096	-				-0.9
1,740,131	+				-0.7
1,740,131	+				-0.6
1,740,131	+				-0.8
1,740,131	+				+0.6
1,740,132	-				+0.1
1,740,132	-				-0.5
1,740,132	-				+0.7
1,740,132	-				-1.7
1,740,164	+				-1.1
1,740,164	+				-0.5
1,740,164	+				-0.5
1,740,165	-				-0.1
1,740,173	+				+0.3
1,740,173	+				-0.2
1,740,199	+				-0.1
1,740,199	+				+0.9
1,740,199	+				-0.1
1,740,200	-				+0.2
1,740,200	-				-0.1
1,740,201	+				+1.3
1,740,201	+				-1.7
1,740,202	-				-1.6
1,740,202	-				-1.2