Strain Fitness in Pantoea sp. MT58 around IAI47_18985

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_18975 and IAI47_18980 are separated by 43 nucleotidesIAI47_18980 and IAI47_18985 overlap by 4 nucleotidesIAI47_18985 and IAI47_18990 are separated by 137 nucleotides IAI47_18975: IAI47_18975 - B3/4 domain-containing protein, at 28,218 to 28,913 _18975 IAI47_18980: IAI47_18980 - helix-turn-helix domain-containing protein, at 28,957 to 29,559 _18980 IAI47_18985: IAI47_18985 - MarR family transcriptional regulator, at 29,556 to 30,071 _18985 IAI47_18990: IAI47_18990 - MFS transporter, at 30,209 to 31,363 _18990 Position (kb) 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 28.583 kb on - strand, within IAI47_18975at 28.603 kb on + strand, within IAI47_18975at 28.603 kb on + strand, within IAI47_18975at 28.603 kb on + strand, within IAI47_18975at 28.603 kb on + strand, within IAI47_18975at 28.698 kb on - strand, within IAI47_18975at 28.822 kb on - strand, within IAI47_18975at 28.830 kb on - strand, within IAI47_18975at 28.830 kb on - strand, within IAI47_18975at 28.836 kb on + strand, within IAI47_18975at 28.836 kb on + strand, within IAI47_18975at 28.908 kb on + strandat 28.908 kb on + strandat 28.908 kb on + strandat 28.908 kb on + strandat 28.908 kb on + strandat 28.909 kb on - strandat 28.909 kb on - strandat 28.909 kb on - strandat 28.909 kb on - strandat 28.933 kb on + strandat 28.939 kb on - strandat 28.946 kb on - strandat 28.948 kb on + strandat 28.977 kb on - strandat 29.010 kb on + strandat 29.010 kb on + strandat 29.046 kb on + strand, within IAI47_18980at 29.046 kb on + strand, within IAI47_18980at 29.047 kb on - strand, within IAI47_18980at 29.098 kb on - strand, within IAI47_18980at 29.313 kb on + strand, within IAI47_18980at 29.325 kb on - strand, within IAI47_18980at 29.325 kb on - strand, within IAI47_18980at 29.484 kb on + strand, within IAI47_18980at 29.484 kb on + strand, within IAI47_18980at 29.484 kb on + strand, within IAI47_18980at 29.484 kb on + strand, within IAI47_18980at 29.485 kb on - strand, within IAI47_18980at 29.485 kb on - strand, within IAI47_18980at 29.497 kb on + strand, within IAI47_18980at 29.497 kb on + strand, within IAI47_18980at 29.497 kb on + strand, within IAI47_18980at 29.498 kb on - strand, within IAI47_18980at 29.498 kb on - strand, within IAI47_18980at 29.498 kb on - strand, within IAI47_18980at 29.498 kb on - strand, within IAI47_18980at 29.523 kb on + strandat 29.579 kb on + strandat 29.580 kb on - strandat 29.580 kb on - strandat 29.580 kb on - strandat 29.580 kb on - strandat 29.750 kb on + strand, within IAI47_18985at 29.750 kb on + strand, within IAI47_18985at 29.751 kb on - strand, within IAI47_18985at 29.751 kb on - strand, within IAI47_18985at 29.751 kb on - strand, within IAI47_18985at 29.751 kb on - strand, within IAI47_18985at 29.751 kb on - strand, within IAI47_18985at 29.830 kb on - strand, within IAI47_18985at 29.845 kb on + strand, within IAI47_18985at 29.901 kb on + strand, within IAI47_18985at 29.901 kb on + strand, within IAI47_18985at 29.902 kb on - strand, within IAI47_18985at 29.902 kb on - strand, within IAI47_18985at 29.902 kb on - strand, within IAI47_18985at 29.902 kb on - strand, within IAI47_18985at 29.902 kb on - strand, within IAI47_18985at 29.902 kb on - strand, within IAI47_18985at 30.059 kb on + strandat 30.071 kb on + strandat 30.071 kb on + strandat 30.071 kb on + strandat 30.071 kb on + strandat 30.071 kb on + strandat 30.071 kb on + strandat 30.072 kb on - strandat 30.072 kb on - strandat 30.082 kb on + strandat 30.082 kb on + strandat 30.095 kb on + strandat 30.095 kb on + strandat 30.095 kb on + strandat 30.095 kb on + strandat 30.095 kb on + strandat 30.096 kb on - strandat 30.096 kb on - strandat 30.122 kb on + strandat 30.122 kb on + strandat 30.122 kb on + strandat 30.123 kb on - strandat 30.123 kb on - strandat 30.123 kb on - strandat 30.123 kb on - strandat 30.264 kb on + strandat 30.286 kb on + strandat 30.287 kb on - strandat 30.287 kb on - strandat 30.338 kb on - strand, within IAI47_18990at 30.418 kb on + strand, within IAI47_18990at 30.586 kb on + strand, within IAI47_18990at 30.586 kb on + strand, within IAI47_18990at 30.586 kb on + strand, within IAI47_18990at 30.587 kb on - strand, within IAI47_18990at 30.632 kb on - strand, within IAI47_18990at 30.632 kb on - strand, within IAI47_18990at 30.720 kb on + strand, within IAI47_18990at 30.721 kb on - strand, within IAI47_18990at 30.721 kb on - strand, within IAI47_18990at 30.721 kb on - strand, within IAI47_18990at 30.738 kb on + strand, within IAI47_18990at 30.739 kb on - strand, within IAI47_18990at 30.739 kb on - strand, within IAI47_18990at 30.822 kb on + strand, within IAI47_18990at 30.822 kb on + strand, within IAI47_18990at 30.822 kb on + strand, within IAI47_18990at 30.857 kb on + strand, within IAI47_18990at 30.890 kb on + strand, within IAI47_18990at 30.890 kb on + strand, within IAI47_18990at 30.890 kb on + strand, within IAI47_18990at 30.890 kb on + strand, within IAI47_18990at 30.890 kb on + strand, within IAI47_18990at 30.890 kb on + strand, within IAI47_18990at 30.891 kb on - strand, within IAI47_18990at 30.891 kb on - strand, within IAI47_18990at 30.891 kb on - strand, within IAI47_18990at 30.891 kb on - strand, within IAI47_18990at 30.891 kb on - strand, within IAI47_18990at 30.891 kb on - strand, within IAI47_18990at 30.891 kb on - strand, within IAI47_18990at 30.891 kb on - strand, within IAI47_18990at 30.892 kb on + strand, within IAI47_18990at 30.893 kb on - strand, within IAI47_18990at 30.894 kb on + strand, within IAI47_18990at 30.894 kb on + strand, within IAI47_18990at 30.894 kb on + strand, within IAI47_18990at 30.894 kb on + strand, within IAI47_18990at 30.894 kb on + strand, within IAI47_18990at 30.894 kb on + strand, within IAI47_18990at 30.894 kb on + strand, within IAI47_18990at 30.895 kb on - strand, within IAI47_18990at 30.895 kb on - strand, within IAI47_18990at 30.895 kb on - strand, within IAI47_18990at 30.895 kb on - strand, within IAI47_18990at 30.895 kb on - strand, within IAI47_18990at 30.970 kb on + strand, within IAI47_18990at 30.971 kb on - strand, within IAI47_18990at 30.971 kb on - strand, within IAI47_18990at 30.987 kb on + strand, within IAI47_18990at 30.987 kb on + strand, within IAI47_18990at 30.987 kb on + strand, within IAI47_18990at 30.988 kb on - strand, within IAI47_18990at 30.988 kb on - strand, within IAI47_18990at 30.988 kb on - strand, within IAI47_18990at 30.988 kb on - strand, within IAI47_18990at 31.039 kb on - strand, within IAI47_18990at 31.068 kb on - strand, within IAI47_18990

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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28,583 - IAI47_18975 0.52 +3.4
28,603 + IAI47_18975 0.55 -2.0
28,603 + IAI47_18975 0.55 +1.9
28,603 + IAI47_18975 0.55 -1.1
28,603 + IAI47_18975 0.55 +0.4
28,698 - IAI47_18975 0.69 -0.3
28,822 - IAI47_18975 0.87 -0.3
28,830 - IAI47_18975 0.88 +0.0
28,830 - IAI47_18975 0.88 +0.1
28,836 + IAI47_18975 0.89 -2.5
28,836 + IAI47_18975 0.89 +0.1
28,908 + -3.6
28,908 + +0.1
28,908 + +1.9
28,908 + -0.0
28,908 + -1.8
28,909 - -1.9
28,909 - -1.1
28,909 - -0.3
28,909 - +0.7
28,933 + -2.5
28,939 - -0.9
28,946 - +0.7
28,948 + -0.6
28,977 - +2.2
29,010 + -1.0
29,010 + +1.4
29,046 + IAI47_18980 0.15 +1.3
29,046 + IAI47_18980 0.15 -1.9
29,047 - IAI47_18980 0.15 +2.5
29,098 - IAI47_18980 0.23 +0.7
29,313 + IAI47_18980 0.59 -0.6
29,325 - IAI47_18980 0.61 -1.1
29,325 - IAI47_18980 0.61 +2.1
29,484 + IAI47_18980 0.87 +0.5
29,484 + IAI47_18980 0.87 +0.7
29,484 + IAI47_18980 0.87 -1.9
29,484 + IAI47_18980 0.87 -1.3
29,485 - IAI47_18980 0.88 +0.4
29,485 - IAI47_18980 0.88 -0.5
29,497 + IAI47_18980 0.90 -1.4
29,497 + IAI47_18980 0.90 -2.2
29,497 + IAI47_18980 0.90 -0.9
29,498 - IAI47_18980 0.90 +0.5
29,498 - IAI47_18980 0.90 -2.0
29,498 - IAI47_18980 0.90 -1.2
29,498 - IAI47_18980 0.90 -3.6
29,523 + -1.2
29,579 + -0.6
29,580 - +0.8
29,580 - -0.6
29,580 - -1.6
29,580 - -1.5
29,750 + IAI47_18985 0.38 +0.4
29,750 + IAI47_18985 0.38 +2.5
29,751 - IAI47_18985 0.38 -2.2
29,751 - IAI47_18985 0.38 -1.1
29,751 - IAI47_18985 0.38 +0.9
29,751 - IAI47_18985 0.38 +0.1
29,751 - IAI47_18985 0.38 +0.7
29,830 - IAI47_18985 0.53 +1.5
29,845 + IAI47_18985 0.56 -1.1
29,901 + IAI47_18985 0.67 +2.7
29,901 + IAI47_18985 0.67 -0.5
29,902 - IAI47_18985 0.67 +1.1
29,902 - IAI47_18985 0.67 -2.0
29,902 - IAI47_18985 0.67 +1.9
29,902 - IAI47_18985 0.67 +0.3
29,902 - IAI47_18985 0.67 +0.1
29,902 - IAI47_18985 0.67 +0.5
30,059 + -0.6
30,071 + -0.6
30,071 + -3.0
30,071 + -1.6
30,071 + +2.0
30,071 + -0.7
30,071 + +0.1
30,072 - -1.1
30,072 - -0.1
30,082 + -0.9
30,082 + +3.1
30,095 + +0.4
30,095 + +0.0
30,095 + +0.6
30,095 + -2.1
30,095 + -1.1
30,096 - -1.3
30,096 - +0.3
30,122 + +0.3
30,122 + +0.8
30,122 + -3.6
30,123 - -2.6
30,123 - +0.5
30,123 - -0.9
30,123 - +1.7
30,264 + -2.6
30,286 + +1.9
30,287 - -0.8
30,287 - +1.0
30,338 - IAI47_18990 0.11 +1.7
30,418 + IAI47_18990 0.18 +0.4
30,586 + IAI47_18990 0.33 -1.1
30,586 + IAI47_18990 0.33 -0.1
30,586 + IAI47_18990 0.33 -0.0
30,587 - IAI47_18990 0.33 +0.8
30,632 - IAI47_18990 0.37 -0.6
30,632 - IAI47_18990 0.37 +1.9
30,720 + IAI47_18990 0.44 +0.1
30,721 - IAI47_18990 0.44 -0.9
30,721 - IAI47_18990 0.44 +1.1
30,721 - IAI47_18990 0.44 +1.4
30,738 + IAI47_18990 0.46 -1.9
30,739 - IAI47_18990 0.46 -2.6
30,739 - IAI47_18990 0.46 +1.7
30,822 + IAI47_18990 0.53 -0.2
30,822 + IAI47_18990 0.53 -0.2
30,822 + IAI47_18990 0.53 -0.3
30,857 + IAI47_18990 0.56 +0.1
30,890 + IAI47_18990 0.59 +1.3
30,890 + IAI47_18990 0.59 -0.7
30,890 + IAI47_18990 0.59 -1.3
30,890 + IAI47_18990 0.59 -0.9
30,890 + IAI47_18990 0.59 +0.3
30,890 + IAI47_18990 0.59 +1.3
30,891 - IAI47_18990 0.59 -0.6
30,891 - IAI47_18990 0.59 -1.3
30,891 - IAI47_18990 0.59 +0.7
30,891 - IAI47_18990 0.59 -0.9
30,891 - IAI47_18990 0.59 +0.4
30,891 - IAI47_18990 0.59 +0.7
30,891 - IAI47_18990 0.59 +0.4
30,891 - IAI47_18990 0.59 -2.4
30,892 + IAI47_18990 0.59 -1.3
30,893 - IAI47_18990 0.59 +0.4
30,894 + IAI47_18990 0.59 +2.2
30,894 + IAI47_18990 0.59 -0.6
30,894 + IAI47_18990 0.59 -0.3
30,894 + IAI47_18990 0.59 +0.2
30,894 + IAI47_18990 0.59 +0.7
30,894 + IAI47_18990 0.59 -0.5
30,894 + IAI47_18990 0.59 -1.8
30,895 - IAI47_18990 0.59 +1.4
30,895 - IAI47_18990 0.59 -1.1
30,895 - IAI47_18990 0.59 +1.2
30,895 - IAI47_18990 0.59 -2.9
30,895 - IAI47_18990 0.59 +0.1
30,970 + IAI47_18990 0.66 -1.1
30,971 - IAI47_18990 0.66 -1.6
30,971 - IAI47_18990 0.66 +0.2
30,987 + IAI47_18990 0.67 +0.1
30,987 + IAI47_18990 0.67 -0.9
30,987 + IAI47_18990 0.67 +1.6
30,988 - IAI47_18990 0.67 -1.5
30,988 - IAI47_18990 0.67 +0.7
30,988 - IAI47_18990 0.67 +0.5
30,988 - IAI47_18990 0.67 -1.1
31,039 - IAI47_18990 0.72 +0.2
31,068 - IAI47_18990 0.74 +0.5

Or see this region's nucleotide sequence