Strain Fitness in Pantoea sp. MT58 around IAI47_10745

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,271,301	+		IAI47_10735	0.86	-0.5
2,271,302	-		IAI47_10735	0.86	+1.6
2,271,302	-		IAI47_10735	0.86	+2.8
2,271,302	-		IAI47_10735	0.86	+0.8
2,271,302	-		IAI47_10735	0.86	+1.4
2,271,307	+		IAI47_10735	0.86	-0.8
2,271,308	-		IAI47_10735	0.86	-1.6
2,271,323	+		IAI47_10735	0.87	-1.8
2,271,323	+		IAI47_10735	0.87	+0.4
2,271,323	+		IAI47_10735	0.87	+1.3
2,271,323	+		IAI47_10735	0.87	+0.3
2,271,323	+		IAI47_10735	0.87	-0.1
2,271,323	+		IAI47_10735	0.87	-0.9
2,271,323	+		IAI47_10735	0.87	+3.5
2,271,323	+		IAI47_10735	0.87	+0.2
2,271,323	+		IAI47_10735	0.87	+0.5
2,271,323	+		IAI47_10735	0.87	+1.5
2,271,323	+		IAI47_10735	0.87	+1.0
2,271,324	-		IAI47_10735	0.87	-2.2
2,271,324	-		IAI47_10735	0.87	-0.0
2,271,324	-		IAI47_10735	0.87	+1.0
2,271,324	-		IAI47_10735	0.87	+0.6
2,271,324	-		IAI47_10735	0.87	-0.1
2,271,324	-		IAI47_10735	0.87	-1.3
2,271,324	-		IAI47_10735	0.87	+1.4
2,271,324	-		IAI47_10735	0.87	+0.2
2,271,324	-		IAI47_10735	0.87	+1.8
2,271,324	-		IAI47_10735	0.87	+0.3
2,271,324	-		IAI47_10735	0.87	+1.2
2,271,383	+				+1.8
2,271,454	+				+1.3
2,271,455	-				+0.2
2,271,455	-				+0.8
2,271,455	-				-0.5
2,271,455	-				-0.9
2,271,473	+				-0.4
2,271,473	+				-2.8
2,271,473	+				-0.8
2,271,474	-				+0.8
2,271,474	-				+0.2
2,271,474	-				-0.8
2,271,474	-				+0.6
2,271,474	-				-1.0
2,271,474	-				+0.5
2,271,474	-				+1.0
2,271,474	-				+0.2
2,271,484	+				-0.2
2,271,485	-				+0.0
2,271,485	-				-0.9
2,271,527	+				-1.4
2,271,527	+				+0.1
2,271,527	+				+2.7
2,271,527	+				+0.2
2,271,527	+				+0.2
2,271,528	-				-1.1
2,271,528	-				-0.8
2,271,528	-				-1.6
2,271,528	-				-0.3
2,271,583	+				+1.1
2,271,592	+				+1.8
2,271,592	+				-2.1
2,271,592	+				+0.8
2,271,592	+				+0.8
2,271,593	-				-0.1
2,271,593	-				+1.5
2,271,593	-				+0.9
2,271,593	-				+1.1
2,271,662	+		IAI47_10740	0.17	-0.0
2,271,743	+		IAI47_10740	0.34	-1.7
2,271,793	+		IAI47_10740	0.45	-1.0
2,271,793	+		IAI47_10740	0.45	+1.8
2,271,793	+		IAI47_10740	0.45	+1.8
2,271,793	+		IAI47_10740	0.45	+0.1
2,271,793	+		IAI47_10740	0.45	+0.3
2,271,794	-		IAI47_10740	0.45	-2.7
2,271,794	-		IAI47_10740	0.45	+1.0
2,271,794	-		IAI47_10740	0.45	+0.6
2,271,794	-		IAI47_10740	0.45	+0.8
2,271,794	-		IAI47_10740	0.45	-1.8
2,271,794	-		IAI47_10740	0.45	-0.0
2,271,794	-		IAI47_10740	0.45	-1.1
2,271,804	-		IAI47_10740	0.47	+2.2
2,271,867	-		IAI47_10740	0.61	-1.4
2,271,867	-		IAI47_10740	0.61	-2.7
2,271,938	+		IAI47_10740	0.76	+0.6
2,271,939	-		IAI47_10740	0.76	-1.8
2,271,939	-		IAI47_10740	0.76	-1.6
2,271,939	-		IAI47_10740	0.76	+0.4
2,271,986	+		IAI47_10740	0.86	-2.4
2,271,986	+		IAI47_10740	0.86	+0.7
2,271,986	+		IAI47_10740	0.86	-0.8
2,271,987	-		IAI47_10740	0.87	+0.3
2,271,987	-		IAI47_10740	0.87	-0.4
2,271,999	-		IAI47_10740	0.89	+1.2
2,272,023	+				+1.0
2,272,023	+				+2.8
2,272,023	+				-0.8
2,272,023	+				-1.8
2,272,023	+				-0.5
2,272,023	+				-0.2
2,272,023	+				-0.2
2,272,024	-				+0.8
2,272,024	-				-1.5
2,272,024	-				+0.1
2,272,024	-				-1.0
2,272,024	-				-0.6
2,272,024	-				+2.1
2,272,029	+				+3.8
2,272,029	+				+0.5
2,272,029	+				+0.1
2,272,030	-				+0.6
2,272,030	-				+0.4
2,272,030	-				-0.2
2,272,030	-				-0.2
2,272,098	-				-0.2
2,272,098	-				-1.8
2,272,120	+				-2.1
2,272,120	+				+1.8
2,272,120	+				+0.6
2,272,120	+				+3.4
2,272,121	-				-1.2
2,272,121	-				-0.2
2,272,121	-				-2.0
2,272,121	-				+0.9
2,272,162	+				-1.2
2,272,163	-				-0.1
2,272,163	-				-0.7
2,272,186	+				+0.9
2,272,187	-				+2.2
2,272,199	+				-1.4
2,272,228	-				-1.7
2,272,288	-		IAI47_10745	0.21	-0.1
2,272,322	+		IAI47_10745	0.27	-0.3
2,272,349	+		IAI47_10745	0.33	+1.8
2,272,349	+		IAI47_10745	0.33	+0.6
2,272,350	-		IAI47_10745	0.33	+0.8
2,272,385	+		IAI47_10745	0.39	-0.4
2,272,386	-		IAI47_10745	0.40	+2.1
2,272,488	+		IAI47_10745	0.59	+3.8
2,272,488	+		IAI47_10745	0.59	+0.7
2,272,489	-		IAI47_10745	0.60	+0.9
2,272,489	-		IAI47_10745	0.60	-0.8
2,272,556	+		IAI47_10745	0.72	+1.0
2,272,556	+		IAI47_10745	0.72	+1.2
2,272,556	+		IAI47_10745	0.72	-1.9
2,272,556	+		IAI47_10745	0.72	-1.0
2,272,556	+		IAI47_10745	0.72	-1.7
2,272,557	-		IAI47_10745	0.73	+0.5
2,272,557	-		IAI47_10745	0.73	+1.8
2,272,557	-		IAI47_10745	0.73	-1.9
2,272,557	-		IAI47_10745	0.73	+0.8
2,272,557	-		IAI47_10745	0.73	-2.1
2,272,557	-		IAI47_10745	0.73	+2.8
2,272,611	+		IAI47_10745	0.83	-1.2
2,272,612	-		IAI47_10745	0.83	+1.8
2,272,730	+				+0.1
2,272,730	+				-0.5
2,272,731	-				-0.3
2,272,731	-				-0.4
2,272,731	-				-0.0
2,272,751	+				+1.8
2,272,751	+				+1.9
2,272,777	+				+0.5
2,272,813	-				-1.5
2,272,887	+		IAI47_10750	0.12	+0.2
2,272,888	-		IAI47_10750	0.12	+0.6
2,272,930	+		IAI47_10750	0.16	-0.4
2,272,930	+		IAI47_10750	0.16	+0.8
2,272,931	-		IAI47_10750	0.16	-0.2
2,272,938	+		IAI47_10750	0.17	+0.6
2,272,940	+		IAI47_10750	0.18	+1.3
2,272,941	-		IAI47_10750	0.18	-1.9
2,273,012	+		IAI47_10750	0.26	-2.1
2,273,250	+		IAI47_10750	0.52	-1.7
2,273,250	+		IAI47_10750	0.52	-0.1
2,273,251	-		IAI47_10750	0.52	+0.4
2,273,251	-		IAI47_10750	0.52	-1.4
2,273,251	-		IAI47_10750	0.52	-0.7
2,273,364	+		IAI47_10750	0.65	-0.8
2,273,365	-		IAI47_10750	0.65	-2.4
2,273,384	+		IAI47_10750	0.67	-0.3
2,273,384	+		IAI47_10750	0.67	-1.2
2,273,385	-		IAI47_10750	0.67	+0.3
2,273,385	-		IAI47_10750	0.67	+0.5
2,273,385	-		IAI47_10750	0.67	+0.5
2,273,507	+		IAI47_10750	0.81	+3.7
2,273,508	-		IAI47_10750	0.81	+0.7
2,273,508	-		IAI47_10750	0.81	-0.5
2,273,516	+		IAI47_10750	0.82	-0.2
2,273,517	-		IAI47_10750	0.82	-1.0
2,273,517	-		IAI47_10750	0.82	-0.8
2,273,517	-		IAI47_10750	0.82	-0.2
2,273,517	-		IAI47_10750	0.82	-2.5
2,273,541	+		IAI47_10750	0.85	-1.2
2,273,542	-		IAI47_10750	0.85	+1.8
2,273,542	-		IAI47_10750	0.85	-2.6
2,273,542	-		IAI47_10750	0.85	-0.5
2,273,542	-		IAI47_10750	0.85	-1.4
2,273,568	+		IAI47_10750	0.88	-1.2
2,273,618	+				-1.2
2,273,674	+				-1.0
2,273,674	+				-2.4
2,273,674	+				+1.4
2,273,674	+				+0.8
2,273,674	+				+0.0
2,273,675	-				+0.8