Strain Fitness in Pantoea sp. MT58 around IAI47_07935

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,679,074	+		IAI47_07925	0.62	+1.6
1,679,075	-		IAI47_07925	0.62	+3.8
1,679,331	+		IAI47_07925	0.90	-0.6
1,679,331	+		IAI47_07925	0.90	+2.0
1,679,358	+				-1.7
1,679,358	+				-1.1
1,679,359	-				+1.5
1,679,359	-				-1.0
1,679,359	-				-1.1
1,679,381	+				-1.3
1,679,381	+				-0.9
1,679,394	+				-0.2
1,679,394	+				-1.3
1,679,394	+				-0.4
1,679,394	+				-0.0
1,679,420	+				+0.5
1,679,420	+				+2.0
1,679,422	+				-0.5
1,679,422	+				+1.3
1,679,423	-				-1.9
1,679,439	+				-2.6
1,679,580	+				+0.4
1,679,580	+				-0.9
1,679,580	+				+2.7
1,679,651	+				+1.5
1,679,663	+				-0.0
1,679,664	-				+1.6
1,679,664	-				-0.7
1,679,696	-				-0.9
1,679,722	+				-0.3
1,679,722	+				+2.7
1,679,723	-				-0.0
1,679,746	+				-0.7
1,679,749	+				+0.7
1,679,749	+				-1.9
1,679,749	+				+1.1
1,679,750	-				-2.1
1,679,760	+				+1.9
1,679,761	-				+1.1
1,679,761	-				+0.1
1,679,761	-				+1.7
1,679,761	-				+0.2
1,679,761	-				-2.6
1,679,761	-				-0.7
1,679,761	-				+0.7
1,679,778	-				+2.3
1,679,874	+		IAI47_07930	0.54	+0.1
1,679,883	+		IAI47_07930	0.59	+1.3
1,679,910	-		IAI47_07930	0.75	+2.2
1,679,952	+				+0.7
1,679,952	+				+0.9
1,679,953	-				-0.2
1,679,953	-				-0.6
1,679,955	+				-1.1
1,679,955	+				-1.1
1,679,955	+				+0.5
1,679,955	+				+0.1
1,679,955	+				+1.0
1,679,955	+				+1.2
1,679,955	+				-0.3
1,679,956	-				+1.7
1,679,956	-				+2.7
1,679,956	-				+3.7
1,679,960	+				-1.1
1,679,960	+				+1.0
1,679,960	+				+0.4
1,679,960	+				-1.3
1,679,960	+				-2.5
1,679,960	+				+0.3
1,679,960	+				+0.0
1,679,961	-				+3.2
1,679,961	-				+0.7
1,679,961	-				+1.5
1,679,998	-				+0.5
1,680,077	+				-0.3
1,680,077	+				-1.7
1,680,081	+				-1.3
1,680,081	+				-0.3
1,680,081	+				+2.1
1,680,081	+				+1.5
1,680,082	-				+1.1
1,680,082	-				-0.6
1,680,082	-				-2.6
1,680,082	-				+2.7
1,680,082	-				+0.4
1,680,130	+				-0.6
1,680,130	+				+1.5
1,680,131	-				-2.7
1,680,132	+				-2.3
1,680,133	-				+0.6
1,680,133	-				+1.2
1,680,141	+				+1.0
1,680,192	+		IAI47_07935	0.12	+0.9
1,680,262	-		IAI47_07935	0.18	+0.2
1,680,263	+		IAI47_07935	0.18	+1.4
1,680,263	+		IAI47_07935	0.18	+0.5
1,680,263	+		IAI47_07935	0.18	+0.7
1,680,263	+		IAI47_07935	0.18	+1.7
1,680,263	+		IAI47_07935	0.18	+1.7
1,680,263	+		IAI47_07935	0.18	+0.9
1,680,264	-		IAI47_07935	0.18	+0.3
1,680,264	-		IAI47_07935	0.18	-1.1
1,680,264	-		IAI47_07935	0.18	+2.3
1,680,277	-		IAI47_07935	0.19	+0.3
1,680,277	-		IAI47_07935	0.19	+1.6
1,680,288	+		IAI47_07935	0.20	+3.2
1,680,289	-		IAI47_07935	0.20	+2.7
1,680,289	-		IAI47_07935	0.20	+2.0
1,680,293	+		IAI47_07935	0.21	-0.4
1,680,296	+		IAI47_07935	0.21	+1.9
1,680,296	+		IAI47_07935	0.21	+0.0
1,680,296	+		IAI47_07935	0.21	-1.7
1,680,296	+		IAI47_07935	0.21	-2.3
1,680,296	+		IAI47_07935	0.21	-1.9
1,680,296	+		IAI47_07935	0.21	+0.7
1,680,296	+		IAI47_07935	0.21	-1.9
1,680,296	+		IAI47_07935	0.21	+2.0
1,680,297	-		IAI47_07935	0.21	-0.3
1,680,297	-		IAI47_07935	0.21	+0.7
1,680,297	-		IAI47_07935	0.21	-1.3
1,680,297	-		IAI47_07935	0.21	+0.2
1,680,330	+		IAI47_07935	0.24	-1.5
1,680,331	-		IAI47_07935	0.24	+0.7
1,680,331	-		IAI47_07935	0.24	-0.5
1,680,357	+		IAI47_07935	0.26	+0.4
1,680,358	-		IAI47_07935	0.26	+0.9
1,680,390	+		IAI47_07935	0.29	+0.4
1,680,391	-		IAI47_07935	0.29	-1.6
1,680,391	-		IAI47_07935	0.29	+0.8
1,680,391	-		IAI47_07935	0.29	+0.4
1,680,391	-		IAI47_07935	0.29	+0.6
1,680,391	-		IAI47_07935	0.29	+1.3
1,680,446	+		IAI47_07935	0.33	-2.5
1,680,446	+		IAI47_07935	0.33	+0.9
1,680,446	+		IAI47_07935	0.33	+0.5
1,680,446	+		IAI47_07935	0.33	-0.6
1,680,447	-		IAI47_07935	0.33	+1.0
1,680,447	-		IAI47_07935	0.33	+1.3
1,680,447	-		IAI47_07935	0.33	+0.3
1,680,447	-		IAI47_07935	0.33	+1.5
1,680,450	+		IAI47_07935	0.34	+0.5
1,680,488	+		IAI47_07935	0.37	+0.4
1,680,488	+		IAI47_07935	0.37	+3.3
1,680,488	+		IAI47_07935	0.37	-0.9
1,680,489	-		IAI47_07935	0.37	+1.1
1,680,489	-		IAI47_07935	0.37	-1.9
1,680,489	-		IAI47_07935	0.37	-0.4
1,680,489	-		IAI47_07935	0.37	-1.3
1,680,489	-		IAI47_07935	0.37	+1.3
1,680,489	-		IAI47_07935	0.37	-2.0
1,680,497	+		IAI47_07935	0.37	-1.1
1,680,497	+		IAI47_07935	0.37	-2.3
1,680,498	-		IAI47_07935	0.38	-1.6
1,680,546	+		IAI47_07935	0.41	-1.3
1,680,546	+		IAI47_07935	0.41	+0.0
1,680,546	+		IAI47_07935	0.41	-0.3
1,680,614	+		IAI47_07935	0.47	+3.0
1,680,614	+		IAI47_07935	0.47	+1.2
1,680,615	-		IAI47_07935	0.47	-0.6
1,680,624	-		IAI47_07935	0.48	+0.2
1,680,624	-		IAI47_07935	0.48	+0.1
1,680,638	+		IAI47_07935	0.49	+1.9
1,680,638	+		IAI47_07935	0.49	+1.7
1,680,639	-		IAI47_07935	0.49	+1.7
1,680,677	-		IAI47_07935	0.52	-1.7
1,680,685	+		IAI47_07935	0.53	-0.5
1,680,686	-		IAI47_07935	0.53	-0.4
1,680,696	+		IAI47_07935	0.54	-2.1
1,680,696	+		IAI47_07935	0.54	-0.3
1,680,696	+		IAI47_07935	0.54	-1.0
1,680,696	+		IAI47_07935	0.54	-0.5
1,680,696	+		IAI47_07935	0.54	-2.6
1,680,722	+		IAI47_07935	0.56	+1.1
1,680,723	-		IAI47_07935	0.56	+1.7
1,680,723	-		IAI47_07935	0.56	+0.9
1,680,723	-		IAI47_07935	0.56	-1.6
1,680,743	+		IAI47_07935	0.58	+1.5
1,680,800	+		IAI47_07935	0.62	+1.3
1,680,800	+		IAI47_07935	0.62	+1.1
1,680,800	+		IAI47_07935	0.62	-1.3
1,680,801	-		IAI47_07935	0.62	+2.3
1,680,801	-		IAI47_07935	0.62	+1.0
1,680,801	-		IAI47_07935	0.62	+2.1
1,680,801	-		IAI47_07935	0.62	-0.3
1,680,801	-		IAI47_07935	0.62	+2.1
1,680,810	+		IAI47_07935	0.63	+2.0
1,680,811	-		IAI47_07935	0.63	+0.4
1,680,858	+		IAI47_07935	0.67	+0.0
1,680,858	+		IAI47_07935	0.67	-0.9
1,680,859	-		IAI47_07935	0.67	+2.7
1,680,859	-		IAI47_07935	0.67	-1.7
1,680,859	-		IAI47_07935	0.67	+0.6
1,680,859	-		IAI47_07935	0.67	+1.1
1,680,860	+		IAI47_07935	0.67	-0.5
1,680,860	+		IAI47_07935	0.67	+0.0
1,680,860	+		IAI47_07935	0.67	-1.6
1,680,861	-		IAI47_07935	0.67	-1.5
1,680,891	+		IAI47_07935	0.70	-1.0
1,681,067	+		IAI47_07935	0.84	+1.4
1,681,068	-		IAI47_07935	0.84	+0.4
1,681,068	-		IAI47_07935	0.84	-1.3
1,681,068	-		IAI47_07935	0.84	-1.1
1,681,077	+		IAI47_07935	0.85	-0.3
1,681,129	+		IAI47_07935	0.89	-0.0
1,681,130	-		IAI47_07935	0.89	-0.2
1,681,175	-				+1.7
1,681,175	-				+2.4
1,681,212	+				+1.7
1,681,227	+				-0.6
1,681,227	+				-2.5
1,681,234	+				-1.7
1,681,235	-				-0.7
1,681,274	+				+1.7
1,681,274	+				+0.6
1,681,275	-				-2.6
1,681,292	+				-1.7
1,681,292	+				-0.4
1,681,292	+				-2.6
1,681,292	+				-1.5
1,681,295	+				+0.7
1,681,295	+				-0.8
1,681,295	+				-1.3
1,681,295	+				+1.4
1,681,296	-				+2.5
1,681,296	-				+2.6
1,681,296	-				+1.7
1,681,296	-				+0.2
1,681,314	-				-1.6
1,681,362	-				-2.0
1,681,362	-				-2.5
1,681,404	+		IAI47_07940	0.14	+0.6
1,681,405	-		IAI47_07940	0.14	-1.1
1,681,405	-		IAI47_07940	0.14	+0.9
1,681,409	+		IAI47_07940	0.15	-0.1
1,681,409	+		IAI47_07940	0.15	+2.6
1,681,409	+		IAI47_07940	0.15	+1.7
1,681,409	+		IAI47_07940	0.15	+0.5
1,681,409	+		IAI47_07940	0.15	-1.1
1,681,409	+		IAI47_07940	0.15	+1.7
1,681,410	-		IAI47_07940	0.15	-1.1
1,681,410	-		IAI47_07940	0.15	-0.4
1,681,416	+		IAI47_07940	0.15	-2.9
1,681,416	+		IAI47_07940	0.15	+0.7
1,681,416	+		IAI47_07940	0.15	+0.7
1,681,417	-		IAI47_07940	0.16	-0.0
1,681,430	+		IAI47_07940	0.17	-2.8
1,681,430	+		IAI47_07940	0.17	+0.9
1,681,431	-		IAI47_07940	0.17	+0.5
1,681,431	-		IAI47_07940	0.17	+0.1
1,681,431	-		IAI47_07940	0.17	-1.1
1,681,461	+		IAI47_07940	0.21	+1.2
1,681,462	-		IAI47_07940	0.21	-0.4
1,681,462	-		IAI47_07940	0.21	-0.7
1,681,462	-		IAI47_07940	0.21	-1.9
1,681,462	-		IAI47_07940	0.21	-2.8
1,681,705	+		IAI47_07940	0.52	-2.3
1,681,706	-		IAI47_07940	0.52	+4.5
1,681,805	+		IAI47_07940	0.65	-1.1
1,681,805	+		IAI47_07940	0.65	-0.2
1,681,806	-		IAI47_07940	0.65	-2.2
1,681,806	-		IAI47_07940	0.65	+1.5
1,681,806	-		IAI47_07940	0.65	+1.4
1,681,815	+		IAI47_07940	0.66	+0.5
1,681,816	-		IAI47_07940	0.66	+2.5
1,681,816	-		IAI47_07940	0.66	-0.6
1,681,819	-		IAI47_07940	0.67	+2.6
1,681,819	-		IAI47_07940	0.67	+1.8
1,681,819	-		IAI47_07940	0.67	+0.7
1,681,855	+		IAI47_07940	0.71	+0.1
1,681,855	+		IAI47_07940	0.71	+1.3
1,681,878	+		IAI47_07940	0.74	+0.9
1,681,878	+		IAI47_07940	0.74	+1.0
1,681,878	+		IAI47_07940	0.74	+0.2
1,681,920	+		IAI47_07940	0.79	+1.3
1,682,012	+				+1.2
1,682,012	+				-0.9
1,682,012	+				+0.5
1,682,012	+				+1.1
1,682,012	+				-0.3
1,682,013	-				+1.7
1,682,016	+				-2.6
1,682,016	+				-1.2
1,682,016	+				-1.0
1,682,016	+				+1.5
1,682,016	+				+1.2
1,682,016	+				-1.8
1,682,016	+				-0.1
1,682,016	+				-0.1
1,682,016	+				-2.3
1,682,016	+				+1.9
1,682,016	+				+1.0
1,682,016	+				+0.6
1,682,016	+				+0.0
1,682,016	+				+0.4
1,682,017	-				-0.1
1,682,017	-				-0.4
1,682,017	-				+0.1
1,682,017	-				+0.6
1,682,017	-				-0.4
1,682,017	-				-1.2
1,682,017	-				-1.9
1,682,017	-				-1.6
1,682,026	+				-1.7
1,682,026	+				-2.7
1,682,026	+				+1.0
1,682,026	+				+1.7
1,682,027	-				-1.3
1,682,027	-				+0.1
1,682,027	-				-1.6
1,682,027	-				-0.3
1,682,029	+				-0.1
1,682,030	-				+0.9
1,682,030	-				+1.0
1,682,050	-				-1.6
1,682,053	-				-0.3
1,682,085	-				+0.9
1,682,085	-				-0.1
1,682,134	+				-0.6
1,682,134	+				-0.6
1,682,134	+				-1.5
1,682,135	-				-1.5
1,682,136	+				+0.5
1,682,136	+				+0.0
1,682,137	-				+1.6
1,682,137	-				-0.6
1,682,137	-				-0.6
1,682,137	-				+0.3
1,682,145	-				-2.9
1,682,197	+				+0.5
1,682,213	+				+2.2