Strain Fitness in Pantoea sp. MT58 around IAI47_07500

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,581,603	+				+0.1
1,581,636	+				+0.7
1,581,638	+				+0.7
1,581,639	-				+1.2
1,581,639	-				-1.1
1,581,664	+				-2.2
1,581,716	+				-2.9
1,581,717	-				+1.0
1,581,718	+				-1.5
1,581,718	+				-1.9
1,581,719	-				-1.1
1,581,749	-				+0.7
1,581,760	+				+1.4
1,581,760	+				-1.6
1,581,761	-				-0.2
1,581,761	-				-1.1
1,581,794	-				-1.6
1,581,794	-				+2.3
1,581,796	+				+1.2
1,581,797	-				-0.5
1,581,813	+				+0.1
1,581,821	+				-2.5
1,581,821	+				+0.3
1,581,822	-				+0.1
1,581,822	-				+1.0
1,581,823	+				+4.1
1,581,823	+				-1.8
1,581,823	+				+0.1
1,581,823	+				-1.5
1,581,823	+				-2.8
1,581,823	+				-0.6
1,581,823	+				-2.5
1,581,823	+				-1.3
1,581,823	+				-0.2
1,581,823	+				+0.1
1,581,824	-				-1.3
1,581,824	-				-1.5
1,581,824	-				+0.5
1,581,948	+		IAI47_07495	0.14	-0.4
1,581,948	+		IAI47_07495	0.14	-1.8
1,581,948	+		IAI47_07495	0.14	-0.6
1,581,948	+		IAI47_07495	0.14	+0.1
1,581,949	-		IAI47_07495	0.14	-1.5
1,581,949	-		IAI47_07495	0.14	-0.5
1,581,949	-		IAI47_07495	0.14	+0.9
1,581,953	-		IAI47_07495	0.16	-0.3
1,581,953	-		IAI47_07495	0.16	-3.8
1,581,953	-		IAI47_07495	0.16	+0.1
1,581,982	-		IAI47_07495	0.25	-2.5
1,582,003	-		IAI47_07495	0.32	+2.2
1,582,003	-		IAI47_07495	0.32	+0.7
1,582,031	+		IAI47_07495	0.41	+0.4
1,582,031	+		IAI47_07495	0.41	+1.1
1,582,032	-		IAI47_07495	0.41	-1.6
1,582,032	-		IAI47_07495	0.41	-0.6
1,582,032	-		IAI47_07495	0.41	+0.5
1,582,035	+		IAI47_07495	0.42	+0.2
1,582,035	+		IAI47_07495	0.42	-1.6
1,582,035	+		IAI47_07495	0.42	-0.5
1,582,035	+		IAI47_07495	0.42	+1.7
1,582,035	+		IAI47_07495	0.42	-0.6
1,582,035	+		IAI47_07495	0.42	-0.2
1,582,035	+		IAI47_07495	0.42	+2.4
1,582,035	+		IAI47_07495	0.42	+1.1
1,582,035	+		IAI47_07495	0.42	-1.6
1,582,035	+		IAI47_07495	0.42	-1.9
1,582,036	-		IAI47_07495	0.42	-2.4
1,582,036	-		IAI47_07495	0.42	+0.5
1,582,036	-		IAI47_07495	0.42	+0.8
1,582,036	-		IAI47_07495	0.42	+0.4
1,582,036	-		IAI47_07495	0.42	+1.9
1,582,036	-		IAI47_07495	0.42	+0.9
1,582,036	-		IAI47_07495	0.42	-0.9
1,582,036	-		IAI47_07495	0.42	-2.1
1,582,036	-		IAI47_07495	0.42	-1.5
1,582,036	-		IAI47_07495	0.42	-2.1
1,582,036	-		IAI47_07495	0.42	-1.3
1,582,056	+		IAI47_07495	0.49	+1.7
1,582,056	+		IAI47_07495	0.49	-0.9
1,582,092	+		IAI47_07495	0.60	-0.1
1,582,093	-		IAI47_07495	0.61	+0.0
1,582,093	-		IAI47_07495	0.61	+0.8
1,582,093	-		IAI47_07495	0.61	-0.7
1,582,093	-		IAI47_07495	0.61	-0.3
1,582,115	+		IAI47_07495	0.68	+0.5
1,582,150	+		IAI47_07495	0.79	+1.0
1,582,173	+		IAI47_07495	0.86	-0.3
1,582,174	-		IAI47_07495	0.87	-1.9
1,582,202	+				+1.2
1,582,202	+				-1.6
1,582,202	+				-1.8
1,582,202	+				-0.5
1,582,203	-				+1.4
1,582,219	+				-2.2
1,582,219	+				-0.1
1,582,219	+				+0.1
1,582,220	-				+0.1
1,582,233	+				-1.5
1,582,233	+				-1.3
1,582,233	+				-3.1
1,582,233	+				+0.1
1,582,233	+				-0.8
1,582,233	+				+1.9
1,582,233	+				+0.4
1,582,234	-				+0.7
1,582,234	-				-0.3
1,582,234	-				+0.6
1,582,266	+				-0.1
1,582,266	+				-0.1
1,582,266	+				+2.4
1,582,267	-				-0.1
1,582,267	-				+0.3
1,582,293	+				+0.1
1,582,293	+				+0.8
1,582,293	+				+0.4
1,582,293	+				-0.3
1,582,293	+				+1.5
1,582,294	-				+0.1
1,582,294	-				+3.3
1,582,294	-				-0.9
1,582,294	-				-1.5
1,582,298	+				+0.2
1,582,299	-				+0.7
1,582,373	+				+0.7
1,582,374	-				-1.5
1,582,515	+				-1.5
1,582,516	-				+1.3
1,582,516	-				-0.7
1,582,557	+				+1.0
1,582,558	-				-2.1
1,582,558	-				-1.1
1,582,582	+				+0.7
1,582,582	+				+0.6
1,582,583	-				-0.8
1,582,604	+				-0.6
1,582,605	-				-1.3
1,582,605	-				-0.8
1,582,649	+		IAI47_07500	0.11	+0.4
1,582,650	-		IAI47_07500	0.11	+0.0
1,582,650	-		IAI47_07500	0.11	+0.6
1,582,665	+		IAI47_07500	0.14	+0.5
1,582,665	+		IAI47_07500	0.14	+1.3
1,582,665	+		IAI47_07500	0.14	-1.8
1,582,666	-		IAI47_07500	0.14	+1.1
1,582,666	-		IAI47_07500	0.14	-0.8
1,582,666	-		IAI47_07500	0.14	-0.9
1,582,778	+		IAI47_07500	0.34	-2.7
1,582,779	-		IAI47_07500	0.34	+0.4
1,582,779	-		IAI47_07500	0.34	+1.0
1,582,790	-		IAI47_07500	0.36	+0.9
1,582,790	-		IAI47_07500	0.36	-2.7
1,582,790	-		IAI47_07500	0.36	+0.3
1,582,790	-		IAI47_07500	0.36	-1.9
1,582,790	-		IAI47_07500	0.36	-0.1
1,582,842	+		IAI47_07500	0.45	-1.7
1,582,851	+		IAI47_07500	0.47	+1.1
1,582,851	+		IAI47_07500	0.47	+1.0
1,582,851	+		IAI47_07500	0.47	-3.4
1,582,851	+		IAI47_07500	0.47	-0.6
1,582,851	+		IAI47_07500	0.47	-1.2
1,582,851	+		IAI47_07500	0.47	+0.8
1,582,851	+		IAI47_07500	0.47	+1.0
1,582,852	-		IAI47_07500	0.47	+1.2
1,582,852	-		IAI47_07500	0.47	-0.4
1,582,852	-		IAI47_07500	0.47	-1.0
1,582,870	-		IAI47_07500	0.50	-0.8
1,582,894	-		IAI47_07500	0.54	+0.9
1,582,895	+		IAI47_07500	0.54	-0.9
1,582,895	+		IAI47_07500	0.54	-0.9
1,582,895	+		IAI47_07500	0.54	-0.4
1,582,896	-		IAI47_07500	0.55	-0.1
1,582,896	-		IAI47_07500	0.55	+1.7
1,582,911	+		IAI47_07500	0.57	-1.3
1,582,930	+		IAI47_07500	0.61	-1.8
1,582,930	+		IAI47_07500	0.61	-1.3
1,582,930	+		IAI47_07500	0.61	+0.2
1,582,933	+		IAI47_07500	0.61	-0.9
1,582,933	+		IAI47_07500	0.61	+1.7
1,582,933	+		IAI47_07500	0.61	+1.3
1,582,934	-		IAI47_07500	0.61	+0.9
1,582,934	-		IAI47_07500	0.61	+0.6
1,582,934	-		IAI47_07500	0.61	-0.2
1,582,941	-		IAI47_07500	0.62	+0.3
1,582,944	+		IAI47_07500	0.63	+0.1
1,582,944	+		IAI47_07500	0.63	+0.2
1,582,963	+		IAI47_07500	0.66	-1.0
1,582,964	-		IAI47_07500	0.66	+1.4
1,582,964	-		IAI47_07500	0.66	-2.3
1,582,990	+		IAI47_07500	0.71	-0.6
1,582,993	+		IAI47_07500	0.72	+2.9
1,582,993	+		IAI47_07500	0.72	-1.1
1,582,994	-		IAI47_07500	0.72	-1.6
1,582,994	-		IAI47_07500	0.72	-0.2
1,583,019	+		IAI47_07500	0.76	-1.7
1,583,019	+		IAI47_07500	0.76	+0.3
1,583,019	+		IAI47_07500	0.76	+0.5
1,583,019	+		IAI47_07500	0.76	+0.9
1,583,019	+		IAI47_07500	0.76	-0.1
1,583,019	+		IAI47_07500	0.76	+0.6
1,583,019	+		IAI47_07500	0.76	+0.7
1,583,019	+		IAI47_07500	0.76	+2.2
1,583,019	+		IAI47_07500	0.76	+0.8
1,583,020	-		IAI47_07500	0.76	-2.3
1,583,023	+		IAI47_07500	0.77	-0.6
1,583,024	-		IAI47_07500	0.77	+0.6
1,583,024	-		IAI47_07500	0.77	-1.2
1,583,024	-		IAI47_07500	0.77	-0.2
1,583,025	+		IAI47_07500	0.77	-2.4
1,583,025	+		IAI47_07500	0.77	+0.8
1,583,025	+		IAI47_07500	0.77	-2.2
1,583,026	-		IAI47_07500	0.77	+0.2
1,583,026	-		IAI47_07500	0.77	-0.8
1,583,026	-		IAI47_07500	0.77	+0.6
1,583,026	-		IAI47_07500	0.77	-1.2
1,583,026	-		IAI47_07500	0.77	+0.6
1,583,026	-		IAI47_07500	0.77	+1.6
1,583,104	+				+1.9
1,583,142	+				+0.4
1,583,149	-				+0.7
1,583,152	+				+4.2
1,583,166	+				-3.1
1,583,166	+				-1.4
1,583,166	+				+1.4
1,583,166	+				+1.3
1,583,166	+				-2.1
1,583,166	+				-1.1
1,583,166	+				+1.3
1,583,167	-				-1.1
1,583,167	-				-2.8
1,583,167	-				-1.6
1,583,167	-				+1.1
1,583,169	+				+0.7
1,583,169	+				+0.5
1,583,170	-				-2.8
1,583,170	-				-1.6
1,583,170	-				+2.2
1,583,173	+				+1.4
1,583,174	-				-2.5
1,583,174	-				-2.7
1,583,174	-				-2.0
1,583,174	-				-0.6
1,583,176	-				-2.4
1,583,176	-				-2.7
1,583,176	-				-0.3
1,583,176	-				+0.3
1,583,183	+				-1.9
1,583,188	-				-1.0
1,583,188	-				-1.3
1,583,207	+				+0.2
1,583,207	+				+2.1
1,583,208	-				-2.7
1,583,249	+		IAI47_07505	0.14	+1.7
1,583,313	+		IAI47_07505	0.26	-1.6
1,583,313	+		IAI47_07505	0.26	+0.5
1,583,359	+		IAI47_07505	0.34	+0.6
1,583,359	+		IAI47_07505	0.34	+1.1
1,583,360	-		IAI47_07505	0.34	-1.1
1,583,360	-		IAI47_07505	0.34	-0.1
1,583,360	-		IAI47_07505	0.34	+0.4
1,583,361	+		IAI47_07505	0.35	+1.0
1,583,361	+		IAI47_07505	0.35	-0.8
1,583,361	+		IAI47_07505	0.35	-2.7
1,583,361	+		IAI47_07505	0.35	-1.3
1,583,361	+		IAI47_07505	0.35	-3.3
1,583,362	-		IAI47_07505	0.35	+2.0
1,583,362	-		IAI47_07505	0.35	-0.7
1,583,362	-		IAI47_07505	0.35	+2.0
1,583,362	-		IAI47_07505	0.35	+0.4
1,583,362	-		IAI47_07505	0.35	-1.5
1,583,436	+		IAI47_07505	0.48	-1.1
1,583,437	-		IAI47_07505	0.48	-0.5
1,583,439	+		IAI47_07505	0.49	+1.4
1,583,532	+		IAI47_07505	0.66	-2.5
1,583,532	+		IAI47_07505	0.66	-1.5
1,583,532	+		IAI47_07505	0.66	+1.2
1,583,533	-		IAI47_07505	0.66	+0.4
1,583,533	-		IAI47_07505	0.66	+3.3
1,583,538	+		IAI47_07505	0.67	-2.4
1,583,590	+		IAI47_07505	0.76	+0.9
1,583,590	+		IAI47_07505	0.76	+1.2
1,583,591	-		IAI47_07505	0.76	+0.2
1,583,591	-		IAI47_07505	0.76	+0.6
1,583,591	-		IAI47_07505	0.76	+2.8
1,583,610	+		IAI47_07505	0.80	+1.3
1,583,611	-		IAI47_07505	0.80	-1.9
1,583,720	-				+1.3
1,583,720	-				+0.1
1,583,720	-				+0.3
1,583,728	+				+2.1
1,583,728	+				-0.2
1,583,729	-				+2.7
1,583,759	+				-1.5
1,583,760	-		IAI47_07510	0.10	-1.9
1,583,820	+		IAI47_07510	0.32	+0.0
1,583,820	+		IAI47_07510	0.32	+1.3
1,583,823	-		IAI47_07510	0.33	-1.1
1,583,823	-		IAI47_07510	0.33	-3.4
1,583,823	-		IAI47_07510	0.33	-1.3
1,583,843	+		IAI47_07510	0.40	-0.6
1,583,857	+		IAI47_07510	0.45	-1.3
1,583,859	+		IAI47_07510	0.46	-3.0
1,583,859	+		IAI47_07510	0.46	-0.6
1,583,859	+		IAI47_07510	0.46	-0.3
1,583,859	+		IAI47_07510	0.46	-1.4
1,583,860	-		IAI47_07510	0.46	+0.2
1,583,863	-		IAI47_07510	0.47	-0.6
1,583,907	+		IAI47_07510	0.63	+0.1
1,583,907	+		IAI47_07510	0.63	-2.0
1,583,908	-		IAI47_07510	0.64	-0.3
1,583,917	+		IAI47_07510	0.67	+0.2
1,583,928	+		IAI47_07510	0.71	-0.3
1,583,954	-		IAI47_07510	0.80	-0.4
1,583,955	+		IAI47_07510	0.81	-0.6
1,583,962	+		IAI47_07510	0.83	+0.7
1,583,980	+				+0.1
1,583,981	-				+2.0
1,584,025	-				+1.0
1,584,110	-				+0.3
1,584,119	-				-2.9