Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19260

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19255 and CSW01_19260 are separated by 8 nucleotidesCSW01_19260 and CSW01_19265 are separated by 203 nucleotidesCSW01_19265 and CSW01_19270 are separated by 93 nucleotides CSW01_19255: CSW01_19255 - carbohydrate ABC transporter substrate-binding protein, at 980,804 to 982,180 _19255 CSW01_19260: CSW01_19260 - methyl-accepting chemotaxis protein, at 982,189 to 984,168 _19260 CSW01_19265: CSW01_19265 - DUF3297 domain-containing protein, at 984,372 to 984,620 _19265 CSW01_19270: CSW01_19270 - 3-deoxy-7-phosphoheptulonate synthase, at 984,714 to 985,766 _19270 Position (kb) 982 983 984 985Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 981.210 kb on + strand, within CSW01_19255at 981.210 kb on + strand, within CSW01_19255at 981.218 kb on - strand, within CSW01_19255at 981.218 kb on - strand, within CSW01_19255at 981.341 kb on - strand, within CSW01_19255at 981.523 kb on + strand, within CSW01_19255at 981.531 kb on - strand, within CSW01_19255at 981.668 kb on + strand, within CSW01_19255at 981.809 kb on + strand, within CSW01_19255at 981.817 kb on - strand, within CSW01_19255at 981.903 kb on + strand, within CSW01_19255at 982.022 kb on - strand, within CSW01_19255at 982.022 kb on - strand, within CSW01_19255at 982.022 kb on - strand, within CSW01_19255at 982.138 kb on - strandat 982.158 kb on + strandat 982.185 kb on - strandat 982.193 kb on + strandat 982.193 kb on + strandat 982.201 kb on - strandat 982.201 kb on - strandat 982.201 kb on - strandat 982.320 kb on + strandat 982.548 kb on + strand, within CSW01_19260at 982.556 kb on - strand, within CSW01_19260at 982.686 kb on + strand, within CSW01_19260at 982.733 kb on - strand, within CSW01_19260at 982.733 kb on - strand, within CSW01_19260at 982.781 kb on - strand, within CSW01_19260at 982.904 kb on - strand, within CSW01_19260at 982.966 kb on + strand, within CSW01_19260at 982.966 kb on + strand, within CSW01_19260at 982.974 kb on - strand, within CSW01_19260at 982.988 kb on + strand, within CSW01_19260at 983.091 kb on + strand, within CSW01_19260at 983.099 kb on - strand, within CSW01_19260at 983.122 kb on + strand, within CSW01_19260at 983.189 kb on - strand, within CSW01_19260at 983.257 kb on + strand, within CSW01_19260at 983.257 kb on + strand, within CSW01_19260at 983.257 kb on + strand, within CSW01_19260at 983.265 kb on - strand, within CSW01_19260at 983.285 kb on - strand, within CSW01_19260at 983.285 kb on - strand, within CSW01_19260at 983.362 kb on - strand, within CSW01_19260at 983.456 kb on - strand, within CSW01_19260at 983.528 kb on + strand, within CSW01_19260at 983.537 kb on + strand, within CSW01_19260at 983.581 kb on - strand, within CSW01_19260at 983.581 kb on - strand, within CSW01_19260at 983.826 kb on - strand, within CSW01_19260at 983.828 kb on + strand, within CSW01_19260at 983.836 kb on - strand, within CSW01_19260at 983.836 kb on - strand, within CSW01_19260at 984.030 kb on - strandat 984.038 kb on - strandat 984.048 kb on - strandat 984.086 kb on + strandat 984.086 kb on + strandat 984.088 kb on + strandat 984.153 kb on - strandat 984.156 kb on - strandat 984.157 kb on + strandat 984.287 kb on + strandat 984.311 kb on + strandat 984.332 kb on + strandat 984.332 kb on + strandat 984.332 kb on + strandat 984.340 kb on - strandat 984.340 kb on - strandat 984.340 kb on - strandat 984.404 kb on - strand, within CSW01_19265at 984.459 kb on - strand, within CSW01_19265at 984.507 kb on - strand, within CSW01_19265at 984.517 kb on - strand, within CSW01_19265at 984.537 kb on - strand, within CSW01_19265at 984.571 kb on + strand, within CSW01_19265at 984.571 kb on + strand, within CSW01_19265at 984.571 kb on + strand, within CSW01_19265at 984.579 kb on - strand, within CSW01_19265at 984.579 kb on - strand, within CSW01_19265at 984.584 kb on - strand, within CSW01_19265at 984.629 kb on - strandat 984.758 kb on + strandat 984.837 kb on + strand, within CSW01_19270at 984.940 kb on + strand, within CSW01_19270at 984.948 kb on - strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.958 kb on - strand, within CSW01_19270at 984.958 kb on - strand, within CSW01_19270at 984.958 kb on - strand, within CSW01_19270at 984.958 kb on - strand, within CSW01_19270at 984.958 kb on - strand, within CSW01_19270at 984.958 kb on - strand, within CSW01_19270at 984.958 kb on - strand, within CSW01_19270at 985.016 kb on - strand, within CSW01_19270at 985.055 kb on + strand, within CSW01_19270at 985.058 kb on - strand, within CSW01_19270at 985.063 kb on + strand, within CSW01_19270at 985.081 kb on - strand, within CSW01_19270at 985.138 kb on + strand, within CSW01_19270at 985.165 kb on + strand, within CSW01_19270

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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981,210 + CSW01_19255 0.29 +0.7
981,210 + CSW01_19255 0.29 +2.1
981,218 - CSW01_19255 0.30 -0.1
981,218 - CSW01_19255 0.30 +0.4
981,341 - CSW01_19255 0.39 +0.2
981,523 + CSW01_19255 0.52 -0.2
981,531 - CSW01_19255 0.53 -1.2
981,668 + CSW01_19255 0.63 +0.2
981,809 + CSW01_19255 0.73 -0.7
981,817 - CSW01_19255 0.74 +0.9
981,903 + CSW01_19255 0.80 +0.3
982,022 - CSW01_19255 0.88 -0.5
982,022 - CSW01_19255 0.88 -0.2
982,022 - CSW01_19255 0.88 -0.3
982,138 - -0.8
982,158 + -0.9
982,185 - +0.5
982,193 + -2.2
982,193 + -0.5
982,201 - -1.8
982,201 - +0.7
982,201 - -0.3
982,320 + -0.2
982,548 + CSW01_19260 0.18 +0.0
982,556 - CSW01_19260 0.19 -0.2
982,686 + CSW01_19260 0.25 -0.2
982,733 - CSW01_19260 0.27 -0.1
982,733 - CSW01_19260 0.27 +1.1
982,781 - CSW01_19260 0.30 +0.1
982,904 - CSW01_19260 0.36 -0.4
982,966 + CSW01_19260 0.39 -0.2
982,966 + CSW01_19260 0.39 -1.7
982,974 - CSW01_19260 0.40 +0.8
982,988 + CSW01_19260 0.40 +0.7
983,091 + CSW01_19260 0.46 -0.1
983,099 - CSW01_19260 0.46 -0.9
983,122 + CSW01_19260 0.47 -0.3
983,189 - CSW01_19260 0.51 -0.7
983,257 + CSW01_19260 0.54 +0.7
983,257 + CSW01_19260 0.54 +1.2
983,257 + CSW01_19260 0.54 -1.1
983,265 - CSW01_19260 0.54 +0.1
983,285 - CSW01_19260 0.55 -1.8
983,285 - CSW01_19260 0.55 +0.7
983,362 - CSW01_19260 0.59 +0.0
983,456 - CSW01_19260 0.64 +1.0
983,528 + CSW01_19260 0.68 +0.7
983,537 + CSW01_19260 0.68 -1.5
983,581 - CSW01_19260 0.70 -0.8
983,581 - CSW01_19260 0.70 -0.4
983,826 - CSW01_19260 0.83 -0.0
983,828 + CSW01_19260 0.83 +0.8
983,836 - CSW01_19260 0.83 -0.1
983,836 - CSW01_19260 0.83 -0.1
984,030 - +0.2
984,038 - +0.2
984,048 - -0.3
984,086 + -0.4
984,086 + +0.7
984,088 + -0.5
984,153 - +0.8
984,156 - -0.8
984,157 + +0.8
984,287 + -1.8
984,311 + +1.0
984,332 + +0.8
984,332 + -0.6
984,332 + +0.0
984,340 - -0.9
984,340 - -1.7
984,340 - +0.9
984,404 - CSW01_19265 0.13 -0.2
984,459 - CSW01_19265 0.35 -0.5
984,507 - CSW01_19265 0.54 +0.0
984,517 - CSW01_19265 0.58 -0.9
984,537 - CSW01_19265 0.66 -0.0
984,571 + CSW01_19265 0.80 -1.0
984,571 + CSW01_19265 0.80 -0.4
984,571 + CSW01_19265 0.80 +0.6
984,579 - CSW01_19265 0.83 +1.0
984,579 - CSW01_19265 0.83 +1.5
984,584 - CSW01_19265 0.85 +1.0
984,629 - +0.2
984,758 + +0.7
984,837 + CSW01_19270 0.12 -0.1
984,940 + CSW01_19270 0.21 +1.1
984,948 - CSW01_19270 0.22 -0.3
984,950 + CSW01_19270 0.22 -2.3
984,950 + CSW01_19270 0.22 -0.4
984,950 + CSW01_19270 0.22 -0.3
984,950 + CSW01_19270 0.22 +0.7
984,950 + CSW01_19270 0.22 -3.0
984,950 + CSW01_19270 0.22 -3.1
984,950 + CSW01_19270 0.22 +0.2
984,950 + CSW01_19270 0.22 +1.3
984,950 + CSW01_19270 0.22 +2.2
984,950 + CSW01_19270 0.22 -2.1
984,950 + CSW01_19270 0.22 -0.4
984,950 + CSW01_19270 0.22 -0.8
984,958 - CSW01_19270 0.23 -0.7
984,958 - CSW01_19270 0.23 -0.1
984,958 - CSW01_19270 0.23 +0.3
984,958 - CSW01_19270 0.23 -0.7
984,958 - CSW01_19270 0.23 +0.5
984,958 - CSW01_19270 0.23 -1.0
984,958 - CSW01_19270 0.23 -0.0
985,016 - CSW01_19270 0.29 +0.3
985,055 + CSW01_19270 0.32 -0.3
985,058 - CSW01_19270 0.33 -1.7
985,063 + CSW01_19270 0.33 +0.3
985,081 - CSW01_19270 0.35 +0.3
985,138 + CSW01_19270 0.40 -1.3
985,165 + CSW01_19270 0.43 +0.3

Or see this region's nucleotide sequence