Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19155

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19150 and CSW01_19155 are separated by 26 nucleotidesCSW01_19155 and CSW01_19160 are separated by 213 nucleotidesCSW01_19160 and CSW01_19165 overlap by 4 nucleotides CSW01_19150: CSW01_19150 - EamA family transporter, at 958,524 to 959,420 _19150 CSW01_19155: CSW01_19155 - glutaredoxin, at 959,447 to 960,085 _19155 CSW01_19160: CSW01_19160 - hypothetical protein, at 960,299 to 960,766 _19160 CSW01_19165: CSW01_19165 - hypothetical protein, at 960,763 to 961,494 _19165 Position (kb) 959 960 961Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 958.462 kb on - strandat 958.484 kb on - strandat 958.535 kb on + strandat 958.590 kb on + strandat 958.616 kb on - strand, within CSW01_19150at 958.635 kb on + strand, within CSW01_19150at 958.656 kb on + strand, within CSW01_19150at 958.659 kb on - strand, within CSW01_19150at 958.659 kb on - strand, within CSW01_19150at 958.828 kb on + strand, within CSW01_19150at 958.838 kb on + strand, within CSW01_19150at 958.873 kb on - strand, within CSW01_19150at 958.878 kb on - strand, within CSW01_19150at 958.878 kb on - strand, within CSW01_19150at 958.883 kb on - strand, within CSW01_19150at 958.883 kb on - strand, within CSW01_19150at 958.959 kb on - strand, within CSW01_19150at 959.015 kb on - strand, within CSW01_19150at 959.083 kb on + strand, within CSW01_19150at 959.171 kb on + strand, within CSW01_19150at 959.183 kb on + strand, within CSW01_19150at 959.183 kb on + strand, within CSW01_19150at 959.184 kb on - strand, within CSW01_19150at 959.191 kb on - strand, within CSW01_19150at 959.319 kb on - strand, within CSW01_19150at 959.497 kb on + strandat 959.505 kb on - strandat 959.555 kb on - strand, within CSW01_19155at 959.651 kb on - strand, within CSW01_19155at 959.710 kb on - strand, within CSW01_19155at 959.728 kb on - strand, within CSW01_19155at 959.728 kb on - strand, within CSW01_19155at 959.735 kb on + strand, within CSW01_19155at 959.735 kb on + strand, within CSW01_19155at 959.735 kb on + strand, within CSW01_19155at 959.741 kb on - strand, within CSW01_19155at 959.743 kb on - strand, within CSW01_19155at 959.860 kb on + strand, within CSW01_19155at 959.897 kb on + strand, within CSW01_19155at 959.897 kb on + strand, within CSW01_19155at 959.897 kb on + strand, within CSW01_19155at 959.900 kb on - strand, within CSW01_19155at 959.900 kb on - strand, within CSW01_19155at 959.900 kb on - strand, within CSW01_19155at 959.900 kb on - strand, within CSW01_19155at 959.902 kb on + strand, within CSW01_19155at 959.910 kb on - strand, within CSW01_19155at 959.991 kb on - strand, within CSW01_19155at 960.040 kb on + strandat 960.048 kb on - strandat 960.142 kb on - strandat 960.257 kb on + strandat 960.287 kb on + strandat 960.387 kb on - strand, within CSW01_19160at 960.421 kb on - strand, within CSW01_19160at 960.429 kb on - strand, within CSW01_19160at 960.464 kb on + strand, within CSW01_19160at 960.464 kb on - strand, within CSW01_19160at 960.473 kb on + strand, within CSW01_19160at 960.639 kb on + strand, within CSW01_19160at 960.640 kb on + strand, within CSW01_19160at 960.647 kb on - strand, within CSW01_19160at 960.668 kb on + strand, within CSW01_19160at 960.676 kb on + strand, within CSW01_19160at 960.676 kb on + strand, within CSW01_19160at 960.684 kb on - strand, within CSW01_19160at 960.695 kb on + strand, within CSW01_19160at 960.854 kb on - strand, within CSW01_19165at 960.854 kb on - strand, within CSW01_19165at 960.893 kb on - strand, within CSW01_19165at 960.934 kb on - strand, within CSW01_19165at 960.991 kb on + strand, within CSW01_19165at 960.992 kb on + strand, within CSW01_19165at 961.036 kb on - strand, within CSW01_19165at 961.051 kb on - strand, within CSW01_19165at 961.082 kb on - strand, within CSW01_19165

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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958,462 - +1.3
958,484 - -1.7
958,535 + -0.3
958,590 + -0.4
958,616 - CSW01_19150 0.10 +0.3
958,635 + CSW01_19150 0.12 -0.4
958,656 + CSW01_19150 0.15 -0.1
958,659 - CSW01_19150 0.15 -0.3
958,659 - CSW01_19150 0.15 -0.7
958,828 + CSW01_19150 0.34 +2.7
958,838 + CSW01_19150 0.35 +0.7
958,873 - CSW01_19150 0.39 -0.6
958,878 - CSW01_19150 0.39 -1.8
958,878 - CSW01_19150 0.39 -0.7
958,883 - CSW01_19150 0.40 +1.1
958,883 - CSW01_19150 0.40 +0.2
958,959 - CSW01_19150 0.48 +0.2
959,015 - CSW01_19150 0.55 +0.6
959,083 + CSW01_19150 0.62 +0.4
959,171 + CSW01_19150 0.72 +0.6
959,183 + CSW01_19150 0.73 -1.8
959,183 + CSW01_19150 0.73 +1.2
959,184 - CSW01_19150 0.74 -3.3
959,191 - CSW01_19150 0.74 -1.3
959,319 - CSW01_19150 0.89 +0.2
959,497 + +1.2
959,505 - -0.2
959,555 - CSW01_19155 0.17 +0.5
959,651 - CSW01_19155 0.32 +1.7
959,710 - CSW01_19155 0.41 -0.6
959,728 - CSW01_19155 0.44 +0.6
959,728 - CSW01_19155 0.44 +0.4
959,735 + CSW01_19155 0.45 +0.3
959,735 + CSW01_19155 0.45 -0.4
959,735 + CSW01_19155 0.45 -0.3
959,741 - CSW01_19155 0.46 -0.1
959,743 - CSW01_19155 0.46 -0.5
959,860 + CSW01_19155 0.65 -0.8
959,897 + CSW01_19155 0.70 -0.3
959,897 + CSW01_19155 0.70 -1.5
959,897 + CSW01_19155 0.70 +0.8
959,900 - CSW01_19155 0.71 -0.1
959,900 - CSW01_19155 0.71 +0.1
959,900 - CSW01_19155 0.71 +0.1
959,900 - CSW01_19155 0.71 -0.3
959,902 + CSW01_19155 0.71 +1.3
959,910 - CSW01_19155 0.72 -0.2
959,991 - CSW01_19155 0.85 -0.1
960,040 + -1.1
960,048 - +0.1
960,142 - -0.4
960,257 + -0.4
960,287 + -0.8
960,387 - CSW01_19160 0.19 +0.7
960,421 - CSW01_19160 0.26 -0.9
960,429 - CSW01_19160 0.28 -0.0
960,464 + CSW01_19160 0.35 -0.7
960,464 - CSW01_19160 0.35 +0.5
960,473 + CSW01_19160 0.37 -0.5
960,639 + CSW01_19160 0.73 +0.3
960,640 + CSW01_19160 0.73 -0.1
960,647 - CSW01_19160 0.74 +0.4
960,668 + CSW01_19160 0.79 -0.4
960,676 + CSW01_19160 0.81 +0.3
960,676 + CSW01_19160 0.81 -0.1
960,684 - CSW01_19160 0.82 +0.5
960,695 + CSW01_19160 0.85 -0.2
960,854 - CSW01_19165 0.12 +0.8
960,854 - CSW01_19165 0.12 +0.2
960,893 - CSW01_19165 0.18 +0.1
960,934 - CSW01_19165 0.23 +0.4
960,991 + CSW01_19165 0.31 +0.4
960,992 + CSW01_19165 0.31 +0.1
961,036 - CSW01_19165 0.37 -0.9
961,051 - CSW01_19165 0.39 +0.5
961,082 - CSW01_19165 0.44 -0.2

Or see this region's nucleotide sequence