Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19055

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19050 and CSW01_19055 are separated by 182 nucleotidesCSW01_19055 and CSW01_19060 are separated by 357 nucleotides CSW01_19050: CSW01_19050 - phosphoenolpyruvate synthase, at 936,272 to 938,683 _19050 CSW01_19055: CSW01_19055 - chemotaxis protein, at 938,866 to 940,422 _19055 CSW01_19060: CSW01_19060 - MATE family efflux transporter, at 940,780 to 942,114 _19060 Position (kb) 938 939 940 941Strain fitness (log2 ratio) -3 -2 -1 0 1at 937.878 kb on - strand, within CSW01_19050at 937.952 kb on - strand, within CSW01_19050at 937.976 kb on - strand, within CSW01_19050at 937.985 kb on + strand, within CSW01_19050at 938.062 kb on - strand, within CSW01_19050at 938.163 kb on + strand, within CSW01_19050at 938.163 kb on + strand, within CSW01_19050at 938.163 kb on + strand, within CSW01_19050at 938.163 kb on + strand, within CSW01_19050at 938.250 kb on + strand, within CSW01_19050at 938.255 kb on + strand, within CSW01_19050at 938.255 kb on + strand, within CSW01_19050at 938.263 kb on - strand, within CSW01_19050at 938.427 kb on + strand, within CSW01_19050at 938.427 kb on + strand, within CSW01_19050at 938.484 kb on - strandat 938.588 kb on - strandat 938.621 kb on - strandat 938.637 kb on + strandat 938.660 kb on - strandat 938.677 kb on + strandat 938.690 kb on - strandat 938.758 kb on + strandat 938.828 kb on + strandat 938.835 kb on - strandat 938.848 kb on + strandat 938.906 kb on + strandat 938.909 kb on - strandat 938.981 kb on - strandat 938.996 kb on + strandat 939.019 kb on + strandat 939.068 kb on - strand, within CSW01_19055at 939.088 kb on - strand, within CSW01_19055at 939.089 kb on - strand, within CSW01_19055at 939.148 kb on + strand, within CSW01_19055at 939.269 kb on - strand, within CSW01_19055at 939.316 kb on - strand, within CSW01_19055at 939.320 kb on + strand, within CSW01_19055at 939.320 kb on + strand, within CSW01_19055at 939.396 kb on - strand, within CSW01_19055at 939.475 kb on + strand, within CSW01_19055at 939.501 kb on + strand, within CSW01_19055at 939.808 kb on - strand, within CSW01_19055at 939.890 kb on - strand, within CSW01_19055at 939.930 kb on + strand, within CSW01_19055at 940.007 kb on + strand, within CSW01_19055at 940.007 kb on + strand, within CSW01_19055at 940.042 kb on + strand, within CSW01_19055at 940.042 kb on + strand, within CSW01_19055at 940.047 kb on + strand, within CSW01_19055at 940.047 kb on + strand, within CSW01_19055at 940.047 kb on + strand, within CSW01_19055at 940.117 kb on + strand, within CSW01_19055at 940.136 kb on + strand, within CSW01_19055at 940.143 kb on + strand, within CSW01_19055at 940.166 kb on + strand, within CSW01_19055at 940.279 kb on + strandat 940.325 kb on + strandat 940.333 kb on - strandat 940.410 kb on - strandat 940.424 kb on - strandat 940.455 kb on + strandat 940.505 kb on - strandat 940.520 kb on - strandat 940.591 kb on + strandat 940.640 kb on - strandat 940.646 kb on - strandat 940.690 kb on - strandat 940.737 kb on - strandat 940.766 kb on - strandat 940.835 kb on + strandat 940.862 kb on - strandat 940.868 kb on + strandat 940.869 kb on - strandat 940.910 kb on - strandat 940.910 kb on - strandat 940.924 kb on + strand, within CSW01_19060at 940.930 kb on + strand, within CSW01_19060at 940.984 kb on - strand, within CSW01_19060at 941.052 kb on - strand, within CSW01_19060at 941.122 kb on + strand, within CSW01_19060at 941.142 kb on - strand, within CSW01_19060at 941.213 kb on - strand, within CSW01_19060at 941.226 kb on + strand, within CSW01_19060at 941.250 kb on + strand, within CSW01_19060at 941.289 kb on - strand, within CSW01_19060at 941.397 kb on + strand, within CSW01_19060at 941.402 kb on + strand, within CSW01_19060at 941.402 kb on + strand, within CSW01_19060at 941.416 kb on - strand, within CSW01_19060

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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937,878 - CSW01_19050 0.67 -0.2
937,952 - CSW01_19050 0.70 -0.0
937,976 - CSW01_19050 0.71 -1.0
937,985 + CSW01_19050 0.71 +0.1
938,062 - CSW01_19050 0.74 +0.3
938,163 + CSW01_19050 0.78 +0.3
938,163 + CSW01_19050 0.78 +0.8
938,163 + CSW01_19050 0.78 +0.2
938,163 + CSW01_19050 0.78 +0.5
938,250 + CSW01_19050 0.82 +0.1
938,255 + CSW01_19050 0.82 -0.4
938,255 + CSW01_19050 0.82 +0.4
938,263 - CSW01_19050 0.83 +0.9
938,427 + CSW01_19050 0.89 +0.9
938,427 + CSW01_19050 0.89 -0.7
938,484 - +0.2
938,588 - -0.2
938,621 - -1.0
938,637 + +0.6
938,660 - +0.5
938,677 + +0.6
938,690 - +0.8
938,758 + +0.8
938,828 + -1.1
938,835 - -2.3
938,848 + -0.6
938,906 + +0.6
938,909 - -0.6
938,981 - -0.0
938,996 + +0.6
939,019 + -0.2
939,068 - CSW01_19055 0.13 -0.7
939,088 - CSW01_19055 0.14 +0.5
939,089 - CSW01_19055 0.14 -0.2
939,148 + CSW01_19055 0.18 +0.5
939,269 - CSW01_19055 0.26 -0.4
939,316 - CSW01_19055 0.29 -0.7
939,320 + CSW01_19055 0.29 -0.4
939,320 + CSW01_19055 0.29 +1.3
939,396 - CSW01_19055 0.34 -0.3
939,475 + CSW01_19055 0.39 -1.6
939,501 + CSW01_19055 0.41 -0.1
939,808 - CSW01_19055 0.61 -0.8
939,890 - CSW01_19055 0.66 -0.0
939,930 + CSW01_19055 0.68 -1.0
940,007 + CSW01_19055 0.73 +0.6
940,007 + CSW01_19055 0.73 -0.3
940,042 + CSW01_19055 0.76 -0.5
940,042 + CSW01_19055 0.76 -1.4
940,047 + CSW01_19055 0.76 +0.4
940,047 + CSW01_19055 0.76 +0.1
940,047 + CSW01_19055 0.76 -0.3
940,117 + CSW01_19055 0.80 +0.3
940,136 + CSW01_19055 0.82 +0.3
940,143 + CSW01_19055 0.82 +0.3
940,166 + CSW01_19055 0.83 -0.0
940,279 + -0.6
940,325 + -0.5
940,333 - +1.7
940,410 - -0.3
940,424 - -0.1
940,455 + -0.6
940,505 - -1.7
940,520 - -0.9
940,591 + +0.1
940,640 - +0.8
940,646 - -0.3
940,690 - -0.5
940,737 - +0.5
940,766 - +0.0
940,835 + -0.1
940,862 - +0.4
940,868 + +0.9
940,869 - -0.1
940,910 - +0.3
940,910 - -3.5
940,924 + CSW01_19060 0.11 -0.5
940,930 + CSW01_19060 0.11 -1.8
940,984 - CSW01_19060 0.15 +0.2
941,052 - CSW01_19060 0.20 +0.1
941,122 + CSW01_19060 0.26 -0.6
941,142 - CSW01_19060 0.27 +0.3
941,213 - CSW01_19060 0.32 -0.1
941,226 + CSW01_19060 0.33 -1.5
941,250 + CSW01_19060 0.35 +0.2
941,289 - CSW01_19060 0.38 +0.4
941,397 + CSW01_19060 0.46 -0.7
941,402 + CSW01_19060 0.47 -2.8
941,402 + CSW01_19060 0.47 +0.8
941,416 - CSW01_19060 0.48 -0.7

Or see this region's nucleotide sequence