Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19035

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19030 and CSW01_19035 are separated by 122 nucleotidesCSW01_19035 and CSW01_19040 are separated by 97 nucleotides CSW01_19030: CSW01_19030 - L-lactate permease, at 929,236 to 930,984 _19030 CSW01_19035: CSW01_19035 - alpha-hydroxy-acid oxidizing enzyme, at 931,107 to 932,243 _19035 CSW01_19040: CSW01_19040 - FAD-binding oxidoreductase, at 932,341 to 935,220 _19040 Position (kb) 931 932 933Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 930.138 kb on - strand, within CSW01_19030at 930.191 kb on + strand, within CSW01_19030at 930.191 kb on + strand, within CSW01_19030at 930.199 kb on - strand, within CSW01_19030at 930.222 kb on + strand, within CSW01_19030at 930.242 kb on + strand, within CSW01_19030at 930.255 kb on - strand, within CSW01_19030at 930.330 kb on + strand, within CSW01_19030at 930.383 kb on + strand, within CSW01_19030at 930.447 kb on - strand, within CSW01_19030at 930.458 kb on + strand, within CSW01_19030at 930.458 kb on + strand, within CSW01_19030at 930.458 kb on + strand, within CSW01_19030at 930.466 kb on - strand, within CSW01_19030at 930.480 kb on - strand, within CSW01_19030at 930.580 kb on + strand, within CSW01_19030at 930.580 kb on + strand, within CSW01_19030at 930.580 kb on + strand, within CSW01_19030at 930.580 kb on + strand, within CSW01_19030at 930.580 kb on + strand, within CSW01_19030at 930.588 kb on - strand, within CSW01_19030at 930.630 kb on - strand, within CSW01_19030at 930.689 kb on + strand, within CSW01_19030at 930.700 kb on + strand, within CSW01_19030at 930.748 kb on - strand, within CSW01_19030at 930.827 kb on - strandat 930.869 kb on + strandat 930.869 kb on + strandat 930.869 kb on + strandat 930.874 kb on + strandat 930.898 kb on + strandat 930.911 kb on - strandat 930.911 kb on - strandat 930.916 kb on - strandat 931.092 kb on + strandat 931.095 kb on - strandat 931.167 kb on + strandat 931.210 kb on - strandat 931.237 kb on + strand, within CSW01_19035at 931.237 kb on + strand, within CSW01_19035at 931.245 kb on - strand, within CSW01_19035at 931.245 kb on - strand, within CSW01_19035at 931.245 kb on - strand, within CSW01_19035at 931.270 kb on + strand, within CSW01_19035at 931.278 kb on - strand, within CSW01_19035at 931.411 kb on + strand, within CSW01_19035at 931.470 kb on + strand, within CSW01_19035at 931.617 kb on + strand, within CSW01_19035at 931.630 kb on - strand, within CSW01_19035at 931.638 kb on + strand, within CSW01_19035at 931.646 kb on - strand, within CSW01_19035at 931.646 kb on - strand, within CSW01_19035at 931.735 kb on + strand, within CSW01_19035at 931.787 kb on + strand, within CSW01_19035at 931.787 kb on + strand, within CSW01_19035at 931.843 kb on + strand, within CSW01_19035at 931.908 kb on + strand, within CSW01_19035at 931.912 kb on + strand, within CSW01_19035at 931.912 kb on + strand, within CSW01_19035at 931.955 kb on + strand, within CSW01_19035at 931.955 kb on + strand, within CSW01_19035at 932.040 kb on + strand, within CSW01_19035at 932.041 kb on + strand, within CSW01_19035at 932.048 kb on - strand, within CSW01_19035at 932.048 kb on - strand, within CSW01_19035at 932.049 kb on - strand, within CSW01_19035at 932.067 kb on - strand, within CSW01_19035at 932.080 kb on + strand, within CSW01_19035at 932.118 kb on + strand, within CSW01_19035at 932.118 kb on + strand, within CSW01_19035at 932.208 kb on + strandat 932.572 kb on + strandat 932.606 kb on + strandat 932.642 kb on + strand, within CSW01_19040at 932.658 kb on - strand, within CSW01_19040at 932.709 kb on + strand, within CSW01_19040at 932.766 kb on - strand, within CSW01_19040at 932.829 kb on - strand, within CSW01_19040at 932.958 kb on + strand, within CSW01_19040at 932.966 kb on - strand, within CSW01_19040at 932.970 kb on - strand, within CSW01_19040at 933.110 kb on + strand, within CSW01_19040at 933.133 kb on + strand, within CSW01_19040at 933.160 kb on + strand, within CSW01_19040at 933.160 kb on + strand, within CSW01_19040at 933.168 kb on - strand, within CSW01_19040at 933.175 kb on - strand, within CSW01_19040

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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930,138 - CSW01_19030 0.52 -0.3
930,191 + CSW01_19030 0.55 +0.8
930,191 + CSW01_19030 0.55 -1.1
930,199 - CSW01_19030 0.55 +1.0
930,222 + CSW01_19030 0.56 +0.1
930,242 + CSW01_19030 0.58 -1.3
930,255 - CSW01_19030 0.58 -1.3
930,330 + CSW01_19030 0.63 -0.7
930,383 + CSW01_19030 0.66 -0.4
930,447 - CSW01_19030 0.69 -1.4
930,458 + CSW01_19030 0.70 +0.0
930,458 + CSW01_19030 0.70 -0.5
930,458 + CSW01_19030 0.70 -0.7
930,466 - CSW01_19030 0.70 +0.2
930,480 - CSW01_19030 0.71 +1.7
930,580 + CSW01_19030 0.77 +1.2
930,580 + CSW01_19030 0.77 -0.3
930,580 + CSW01_19030 0.77 -0.2
930,580 + CSW01_19030 0.77 -0.1
930,580 + CSW01_19030 0.77 +0.3
930,588 - CSW01_19030 0.77 +1.3
930,630 - CSW01_19030 0.80 -0.5
930,689 + CSW01_19030 0.83 +0.8
930,700 + CSW01_19030 0.84 +0.4
930,748 - CSW01_19030 0.86 +0.0
930,827 - +1.5
930,869 + -0.0
930,869 + +0.6
930,869 + -0.6
930,874 + -0.2
930,898 + -0.1
930,911 - -0.6
930,911 - +2.1
930,916 - +0.5
931,092 + -0.5
931,095 - +0.7
931,167 + +0.3
931,210 - -0.8
931,237 + CSW01_19035 0.11 -0.5
931,237 + CSW01_19035 0.11 +0.2
931,245 - CSW01_19035 0.12 +0.1
931,245 - CSW01_19035 0.12 -2.3
931,245 - CSW01_19035 0.12 -0.5
931,270 + CSW01_19035 0.14 -0.7
931,278 - CSW01_19035 0.15 -0.4
931,411 + CSW01_19035 0.27 +0.9
931,470 + CSW01_19035 0.32 -0.1
931,617 + CSW01_19035 0.45 -1.7
931,630 - CSW01_19035 0.46 -0.1
931,638 + CSW01_19035 0.47 -0.3
931,646 - CSW01_19035 0.47 -2.5
931,646 - CSW01_19035 0.47 -1.5
931,735 + CSW01_19035 0.55 -0.5
931,787 + CSW01_19035 0.60 +0.7
931,787 + CSW01_19035 0.60 +1.2
931,843 + CSW01_19035 0.65 -0.4
931,908 + CSW01_19035 0.70 -0.6
931,912 + CSW01_19035 0.71 +0.4
931,912 + CSW01_19035 0.71 -4.2
931,955 + CSW01_19035 0.75 -0.7
931,955 + CSW01_19035 0.75 -1.0
932,040 + CSW01_19035 0.82 -1.1
932,041 + CSW01_19035 0.82 -0.2
932,048 - CSW01_19035 0.83 -1.1
932,048 - CSW01_19035 0.83 +1.4
932,049 - CSW01_19035 0.83 -1.7
932,067 - CSW01_19035 0.84 +0.2
932,080 + CSW01_19035 0.86 -0.5
932,118 + CSW01_19035 0.89 -2.5
932,118 + CSW01_19035 0.89 -0.1
932,208 + +0.3
932,572 + -0.4
932,606 + -0.3
932,642 + CSW01_19040 0.10 +0.1
932,658 - CSW01_19040 0.11 +0.1
932,709 + CSW01_19040 0.13 +1.3
932,766 - CSW01_19040 0.15 -0.8
932,829 - CSW01_19040 0.17 +0.5
932,958 + CSW01_19040 0.21 +0.3
932,966 - CSW01_19040 0.22 -0.1
932,970 - CSW01_19040 0.22 +0.1
933,110 + CSW01_19040 0.27 -0.9
933,133 + CSW01_19040 0.28 +0.8
933,160 + CSW01_19040 0.28 +1.0
933,160 + CSW01_19040 0.28 +0.6
933,168 - CSW01_19040 0.29 -1.3
933,175 - CSW01_19040 0.29 +0.5

Or see this region's nucleotide sequence