Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18995

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18990 and CSW01_18995 are separated by 203 nucleotidesCSW01_18995 and CSW01_19000 are separated by 28 nucleotides CSW01_18990: CSW01_18990 - ATP-dependent protease, at 919,985 to 922,345 _18990 CSW01_18995: CSW01_18995 - hypothetical protein, at 922,549 to 923,043 _18995 CSW01_19000: CSW01_19000 - ABC transporter ATP-binding protein, at 923,072 to 924,691 _19000 Position (kb) 922 923 924Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 921.613 kb on + strand, within CSW01_18990at 921.613 kb on + strand, within CSW01_18990at 921.669 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.747 kb on + strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.755 kb on - strand, within CSW01_18990at 921.760 kb on + strand, within CSW01_18990at 921.760 kb on + strand, within CSW01_18990at 921.769 kb on + strand, within CSW01_18990at 921.818 kb on + strand, within CSW01_18990at 921.835 kb on - strand, within CSW01_18990at 921.966 kb on + strand, within CSW01_18990at 921.971 kb on + strand, within CSW01_18990at 921.974 kb on - strand, within CSW01_18990at 921.974 kb on - strand, within CSW01_18990at 921.989 kb on - strand, within CSW01_18990at 922.034 kb on + strand, within CSW01_18990at 922.042 kb on + strand, within CSW01_18990at 922.085 kb on + strand, within CSW01_18990at 922.085 kb on + strand, within CSW01_18990at 922.178 kb on + strandat 922.212 kb on - strandat 922.245 kb on - strandat 922.258 kb on + strandat 922.275 kb on + strandat 922.283 kb on - strandat 922.308 kb on + strandat 922.318 kb on + strandat 922.326 kb on - strandat 922.347 kb on + strandat 922.352 kb on + strandat 922.584 kb on + strandat 922.606 kb on + strand, within CSW01_18995at 922.642 kb on + strand, within CSW01_18995at 922.642 kb on + strand, within CSW01_18995at 922.650 kb on + strand, within CSW01_18995at 922.650 kb on - strand, within CSW01_18995at 922.650 kb on - strand, within CSW01_18995at 922.665 kb on + strand, within CSW01_18995at 922.681 kb on - strand, within CSW01_18995at 922.692 kb on + strand, within CSW01_18995at 922.726 kb on + strand, within CSW01_18995at 922.790 kb on + strand, within CSW01_18995at 922.790 kb on + strand, within CSW01_18995at 922.798 kb on - strand, within CSW01_18995at 922.809 kb on + strand, within CSW01_18995at 922.809 kb on + strand, within CSW01_18995at 922.863 kb on + strand, within CSW01_18995at 922.874 kb on + strand, within CSW01_18995at 922.927 kb on + strand, within CSW01_18995at 922.932 kb on + strand, within CSW01_18995at 922.932 kb on + strand, within CSW01_18995at 922.938 kb on - strand, within CSW01_18995at 922.940 kb on - strand, within CSW01_18995at 922.993 kb on - strand, within CSW01_18995at 922.993 kb on - strand, within CSW01_18995at 923.011 kb on + strandat 923.019 kb on - strandat 923.019 kb on - strandat 923.019 kb on - strandat 923.019 kb on - strandat 923.024 kb on + strandat 923.168 kb on - strandat 923.211 kb on - strandat 923.279 kb on - strand, within CSW01_19000at 923.298 kb on + strand, within CSW01_19000at 923.305 kb on - strand, within CSW01_19000at 923.319 kb on - strand, within CSW01_19000at 923.374 kb on + strand, within CSW01_19000at 923.411 kb on - strand, within CSW01_19000at 923.509 kb on + strand, within CSW01_19000at 923.509 kb on + strand, within CSW01_19000at 923.613 kb on + strand, within CSW01_19000at 923.662 kb on - strand, within CSW01_19000at 923.666 kb on - strand, within CSW01_19000at 923.677 kb on + strand, within CSW01_19000at 923.729 kb on - strand, within CSW01_19000at 923.793 kb on + strand, within CSW01_19000at 923.801 kb on - strand, within CSW01_19000at 923.803 kb on + strand, within CSW01_19000at 923.819 kb on + strand, within CSW01_19000at 923.842 kb on + strand, within CSW01_19000at 923.963 kb on - strand, within CSW01_19000

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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921,613 + CSW01_18990 0.69 -1.3
921,613 + CSW01_18990 0.69 -1.5
921,669 + CSW01_18990 0.71 -1.0
921,747 + CSW01_18990 0.75 +0.3
921,747 + CSW01_18990 0.75 -0.0
921,747 + CSW01_18990 0.75 +1.2
921,747 + CSW01_18990 0.75 +0.8
921,747 + CSW01_18990 0.75 -0.7
921,747 + CSW01_18990 0.75 +0.2
921,747 + CSW01_18990 0.75 -0.1
921,747 + CSW01_18990 0.75 +0.0
921,747 + CSW01_18990 0.75 +2.7
921,747 + CSW01_18990 0.75 -0.6
921,747 + CSW01_18990 0.75 -0.2
921,747 + CSW01_18990 0.75 +0.6
921,747 + CSW01_18990 0.75 +0.3
921,747 + CSW01_18990 0.75 -1.3
921,755 - CSW01_18990 0.75 -0.1
921,755 - CSW01_18990 0.75 -0.3
921,755 - CSW01_18990 0.75 -0.9
921,755 - CSW01_18990 0.75 -0.2
921,755 - CSW01_18990 0.75 -1.4
921,755 - CSW01_18990 0.75 -2.1
921,755 - CSW01_18990 0.75 +0.6
921,755 - CSW01_18990 0.75 +1.7
921,755 - CSW01_18990 0.75 -1.8
921,755 - CSW01_18990 0.75 -1.7
921,755 - CSW01_18990 0.75 -1.6
921,755 - CSW01_18990 0.75 +0.7
921,755 - CSW01_18990 0.75 -0.3
921,760 + CSW01_18990 0.75 -1.3
921,760 + CSW01_18990 0.75 +0.0
921,769 + CSW01_18990 0.76 -0.2
921,818 + CSW01_18990 0.78 +0.2
921,835 - CSW01_18990 0.78 +0.3
921,966 + CSW01_18990 0.84 +0.6
921,971 + CSW01_18990 0.84 -0.4
921,974 - CSW01_18990 0.84 -0.1
921,974 - CSW01_18990 0.84 +2.3
921,989 - CSW01_18990 0.85 -2.7
922,034 + CSW01_18990 0.87 -0.3
922,042 + CSW01_18990 0.87 -1.1
922,085 + CSW01_18990 0.89 -0.2
922,085 + CSW01_18990 0.89 -1.7
922,178 + -0.7
922,212 - +0.8
922,245 - -0.6
922,258 + +0.6
922,275 + -0.3
922,283 - -0.1
922,308 + -2.0
922,318 + -0.1
922,326 - -0.4
922,347 + -1.7
922,352 + +0.6
922,584 + -1.0
922,606 + CSW01_18995 0.12 -0.5
922,642 + CSW01_18995 0.19 -0.6
922,642 + CSW01_18995 0.19 +0.3
922,650 + CSW01_18995 0.20 +1.8
922,650 - CSW01_18995 0.20 -0.4
922,650 - CSW01_18995 0.20 +0.6
922,665 + CSW01_18995 0.23 -0.4
922,681 - CSW01_18995 0.27 +0.3
922,692 + CSW01_18995 0.29 +0.0
922,726 + CSW01_18995 0.36 +0.4
922,790 + CSW01_18995 0.49 -0.3
922,790 + CSW01_18995 0.49 -0.9
922,798 - CSW01_18995 0.50 +0.9
922,809 + CSW01_18995 0.53 +0.4
922,809 + CSW01_18995 0.53 +0.0
922,863 + CSW01_18995 0.63 +1.0
922,874 + CSW01_18995 0.66 +0.5
922,927 + CSW01_18995 0.76 -1.3
922,932 + CSW01_18995 0.77 +0.6
922,932 + CSW01_18995 0.77 -3.3
922,938 - CSW01_18995 0.79 -0.1
922,940 - CSW01_18995 0.79 -3.9
922,993 - CSW01_18995 0.90 -0.4
922,993 - CSW01_18995 0.90 -1.0
923,011 + +0.7
923,019 - +0.3
923,019 - -0.5
923,019 - +1.2
923,019 - +0.9
923,024 + -0.1
923,168 - +0.0
923,211 - +0.4
923,279 - CSW01_19000 0.13 -0.0
923,298 + CSW01_19000 0.14 -1.1
923,305 - CSW01_19000 0.14 +1.8
923,319 - CSW01_19000 0.15 +0.2
923,374 + CSW01_19000 0.19 +0.4
923,411 - CSW01_19000 0.21 -0.3
923,509 + CSW01_19000 0.27 +0.6
923,509 + CSW01_19000 0.27 -0.6
923,613 + CSW01_19000 0.33 +0.5
923,662 - CSW01_19000 0.36 +2.3
923,666 - CSW01_19000 0.37 +0.2
923,677 + CSW01_19000 0.37 -1.1
923,729 - CSW01_19000 0.41 +1.2
923,793 + CSW01_19000 0.45 +2.3
923,801 - CSW01_19000 0.45 -0.9
923,803 + CSW01_19000 0.45 +0.7
923,819 + CSW01_19000 0.46 +0.3
923,842 + CSW01_19000 0.48 -0.1
923,963 - CSW01_19000 0.55 -0.3

Or see this region's nucleotide sequence