Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18895 and CSW01_18900 are separated by 75 nucleotides CSW01_18900 and CSW01_18905 are separated by 168 nucleotides
CSW01_18895: CSW01_18895 - chemotaxis protein CheV, at 901,318 to 902,238
_18895
CSW01_18900: CSW01_18900 - MarR family transcriptional regulator, at 902,314 to 902,838
_18900
CSW01_18905: CSW01_18905 - GGDEF domain-containing protein, at 903,007 to 904,026
_18905
Position (kb) 902
903 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 901.376 kb on + strand at 901.376 kb on + strand at 901.376 kb on + strand at 901.384 kb on - strand at 901.384 kb on - strand at 901.384 kb on - strand at 901.452 kb on + strand, within CSW01_18895 at 901.489 kb on - strand, within CSW01_18895 at 901.600 kb on - strand, within CSW01_18895 at 901.758 kb on - strand, within CSW01_18895 at 901.842 kb on - strand, within CSW01_18895 at 901.879 kb on - strand, within CSW01_18895 at 901.891 kb on + strand, within CSW01_18895 at 902.143 kb on + strand, within CSW01_18895 at 902.262 kb on - strand at 902.319 kb on - strand at 902.320 kb on - strand at 902.322 kb on + strand at 902.322 kb on + strand at 902.489 kb on + strand, within CSW01_18900 at 902.489 kb on + strand, within CSW01_18900 at 902.497 kb on - strand, within CSW01_18900 at 902.518 kb on - strand, within CSW01_18900 at 902.544 kb on + strand, within CSW01_18900 at 902.576 kb on - strand, within CSW01_18900 at 902.589 kb on + strand, within CSW01_18900 at 902.589 kb on + strand, within CSW01_18900 at 902.589 kb on + strand, within CSW01_18900 at 902.597 kb on - strand, within CSW01_18900 at 902.597 kb on - strand, within CSW01_18900 at 902.597 kb on - strand, within CSW01_18900 at 902.597 kb on - strand, within CSW01_18900 at 902.597 kb on - strand, within CSW01_18900 at 902.597 kb on - strand, within CSW01_18900 at 902.628 kb on + strand, within CSW01_18900 at 902.628 kb on + strand, within CSW01_18900 at 902.635 kb on - strand, within CSW01_18900 at 902.654 kb on - strand, within CSW01_18900 at 902.663 kb on + strand, within CSW01_18900 at 902.682 kb on + strand, within CSW01_18900 at 902.782 kb on + strand, within CSW01_18900 at 902.807 kb on - strand at 902.841 kb on + strand at 902.861 kb on + strand at 902.874 kb on + strand at 902.920 kb on - strand at 902.922 kb on - strand at 903.114 kb on + strand, within CSW01_18905 at 903.316 kb on - strand, within CSW01_18905 at 903.372 kb on - strand, within CSW01_18905 at 903.438 kb on + strand, within CSW01_18905 at 903.446 kb on - strand, within CSW01_18905 at 903.494 kb on + strand, within CSW01_18905 at 903.568 kb on + strand, within CSW01_18905 at 903.609 kb on + strand, within CSW01_18905 at 903.609 kb on + strand, within CSW01_18905 at 903.617 kb on - strand, within CSW01_18905 at 903.617 kb on - strand, within CSW01_18905 at 903.617 kb on - strand, within CSW01_18905 at 903.617 kb on - strand, within CSW01_18905 at 903.632 kb on + strand, within CSW01_18905 at 903.664 kb on + strand, within CSW01_18905 at 903.665 kb on - strand, within CSW01_18905 at 903.741 kb on - strand, within CSW01_18905
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A remove 901,376 + -1.2 901,376 + +0.6 901,376 + -0.2 901,384 - -0.3 901,384 - -0.2 901,384 - -0.9 901,452 + CSW01_18895 0.15 +0.1 901,489 - CSW01_18895 0.19 -1.4 901,600 - CSW01_18895 0.31 -0.0 901,758 - CSW01_18895 0.48 +0.9 901,842 - CSW01_18895 0.57 -0.1 901,879 - CSW01_18895 0.61 -2.7 901,891 + CSW01_18895 0.62 +0.4 902,143 + CSW01_18895 0.90 -0.2 902,262 - +0.8 902,319 - +0.4 902,320 - +0.1 902,322 + +0.2 902,322 + +1.5 902,489 + CSW01_18900 0.33 +1.5 902,489 + CSW01_18900 0.33 -1.0 902,497 - CSW01_18900 0.35 +0.1 902,518 - CSW01_18900 0.39 +0.7 902,544 + CSW01_18900 0.44 +0.1 902,576 - CSW01_18900 0.50 -0.4 902,589 + CSW01_18900 0.52 +0.6 902,589 + CSW01_18900 0.52 +0.3 902,589 + CSW01_18900 0.52 +0.1 902,597 - CSW01_18900 0.54 +0.8 902,597 - CSW01_18900 0.54 +0.3 902,597 - CSW01_18900 0.54 -2.8 902,597 - CSW01_18900 0.54 +0.2 902,597 - CSW01_18900 0.54 -0.2 902,597 - CSW01_18900 0.54 -1.1 902,628 + CSW01_18900 0.60 -0.8 902,628 + CSW01_18900 0.60 -0.7 902,635 - CSW01_18900 0.61 -0.6 902,654 - CSW01_18900 0.65 -1.0 902,663 + CSW01_18900 0.66 +0.3 902,682 + CSW01_18900 0.70 -0.0 902,782 + CSW01_18900 0.89 -0.1 902,807 - +0.3 902,841 + -0.5 902,861 + +0.2 902,874 + +1.3 902,920 - -0.4 902,922 - -1.6 903,114 + CSW01_18905 0.10 +0.1 903,316 - CSW01_18905 0.30 +1.7 903,372 - CSW01_18905 0.36 +0.1 903,438 + CSW01_18905 0.42 -0.4 903,446 - CSW01_18905 0.43 +0.9 903,494 + CSW01_18905 0.48 -1.5 903,568 + CSW01_18905 0.55 +0.2 903,609 + CSW01_18905 0.59 -0.2 903,609 + CSW01_18905 0.59 +1.2 903,617 - CSW01_18905 0.60 -0.2 903,617 - CSW01_18905 0.60 +0.4 903,617 - CSW01_18905 0.60 -2.0 903,617 - CSW01_18905 0.60 -0.1 903,632 + CSW01_18905 0.61 +0.3 903,664 + CSW01_18905 0.64 +0.3 903,665 - CSW01_18905 0.65 +0.0 903,741 - CSW01_18905 0.72 -0.1
Or see this region's nucleotide sequence