Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18485

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18480 and CSW01_18485 are separated by 128 nucleotidesCSW01_18485 and CSW01_18490 are separated by 12 nucleotides CSW01_18480: CSW01_18480 - PLP-dependent aminotransferase family protein, at 820,587 to 822,008 _18480 CSW01_18485: CSW01_18485 - cytochrome d terminal oxidase subunit 1, at 822,137 to 823,729 _18485 CSW01_18490: CSW01_18490 - cytochrome d ubiquinol oxidase subunit II, at 823,742 to 824,878 _18490 Position (kb) 822 823 824Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 821.222 kb on + strand, within CSW01_18480at 821.230 kb on - strand, within CSW01_18480at 821.280 kb on + strand, within CSW01_18480at 821.280 kb on + strand, within CSW01_18480at 821.288 kb on - strand, within CSW01_18480at 821.288 kb on - strand, within CSW01_18480at 821.288 kb on - strand, within CSW01_18480at 821.288 kb on - strand, within CSW01_18480at 821.361 kb on - strand, within CSW01_18480at 821.381 kb on + strand, within CSW01_18480at 821.397 kb on + strand, within CSW01_18480at 821.505 kb on - strand, within CSW01_18480at 821.562 kb on - strand, within CSW01_18480at 821.805 kb on - strand, within CSW01_18480at 821.807 kb on + strand, within CSW01_18480at 821.815 kb on - strand, within CSW01_18480at 821.897 kb on + strandat 821.968 kb on + strandat 821.968 kb on + strandat 821.974 kb on - strandat 822.134 kb on - strandat 822.226 kb on - strandat 822.233 kb on - strandat 822.304 kb on - strand, within CSW01_18485at 822.510 kb on + strand, within CSW01_18485at 822.510 kb on + strand, within CSW01_18485at 822.526 kb on - strand, within CSW01_18485at 822.541 kb on + strand, within CSW01_18485at 822.620 kb on + strand, within CSW01_18485at 822.623 kb on - strand, within CSW01_18485at 822.623 kb on - strand, within CSW01_18485at 822.655 kb on - strand, within CSW01_18485at 822.691 kb on + strand, within CSW01_18485at 822.691 kb on + strand, within CSW01_18485at 822.691 kb on + strand, within CSW01_18485at 822.948 kb on - strand, within CSW01_18485at 822.967 kb on - strand, within CSW01_18485at 823.010 kb on + strand, within CSW01_18485at 823.021 kb on + strand, within CSW01_18485at 823.064 kb on + strand, within CSW01_18485at 823.137 kb on - strand, within CSW01_18485at 823.282 kb on + strand, within CSW01_18485at 823.297 kb on - strand, within CSW01_18485at 823.349 kb on - strand, within CSW01_18485at 823.383 kb on + strand, within CSW01_18485at 823.422 kb on - strand, within CSW01_18485at 823.495 kb on + strand, within CSW01_18485at 823.503 kb on - strand, within CSW01_18485at 823.503 kb on - strand, within CSW01_18485at 823.580 kb on + strandat 823.690 kb on - strandat 823.697 kb on - strandat 823.788 kb on + strandat 823.788 kb on + strandat 823.980 kb on - strand, within CSW01_18490at 823.999 kb on + strand, within CSW01_18490at 824.013 kb on + strand, within CSW01_18490at 824.240 kb on - strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.285 kb on + strand, within CSW01_18490at 824.293 kb on - strand, within CSW01_18490at 824.293 kb on - strand, within CSW01_18490at 824.293 kb on - strand, within CSW01_18490at 824.293 kb on - strand, within CSW01_18490at 824.295 kb on + strand, within CSW01_18490at 824.295 kb on + strand, within CSW01_18490at 824.295 kb on + strand, within CSW01_18490at 824.295 kb on + strand, within CSW01_18490at 824.295 kb on + strand, within CSW01_18490at 824.303 kb on - strand, within CSW01_18490at 824.303 kb on - strand, within CSW01_18490at 824.303 kb on - strand, within CSW01_18490at 824.303 kb on - strand, within CSW01_18490at 824.356 kb on + strand, within CSW01_18490at 824.397 kb on + strand, within CSW01_18490at 824.397 kb on + strand, within CSW01_18490at 824.397 kb on + strand, within CSW01_18490at 824.405 kb on - strand, within CSW01_18490at 824.405 kb on - strand, within CSW01_18490at 824.439 kb on + strand, within CSW01_18490at 824.446 kb on + strand, within CSW01_18490at 824.454 kb on - strand, within CSW01_18490at 824.504 kb on - strand, within CSW01_18490at 824.535 kb on + strand, within CSW01_18490at 824.543 kb on - strand, within CSW01_18490at 824.551 kb on - strand, within CSW01_18490at 824.578 kb on + strand, within CSW01_18490at 824.581 kb on - strand, within CSW01_18490at 824.609 kb on + strand, within CSW01_18490at 824.609 kb on + strand, within CSW01_18490at 824.609 kb on + strand, within CSW01_18490at 824.609 kb on + strand, within CSW01_18490at 824.609 kb on + strand, within CSW01_18490at 824.614 kb on + strand, within CSW01_18490at 824.614 kb on + strand, within CSW01_18490at 824.617 kb on - strand, within CSW01_18490at 824.617 kb on - strand, within CSW01_18490at 824.617 kb on - strand, within CSW01_18490at 824.618 kb on - strand, within CSW01_18490at 824.691 kb on + strand, within CSW01_18490at 824.691 kb on + strand, within CSW01_18490at 824.691 kb on + strand, within CSW01_18490at 824.691 kb on + strand, within CSW01_18490at 824.699 kb on - strand, within CSW01_18490at 824.699 kb on - strand, within CSW01_18490at 824.699 kb on - strand, within CSW01_18490at 824.699 kb on - strand, within CSW01_18490at 824.709 kb on + strand, within CSW01_18490at 824.711 kb on - strand, within CSW01_18490at 824.717 kb on - strand, within CSW01_18490at 824.717 kb on - strand, within CSW01_18490

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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821,222 + CSW01_18480 0.45 +0.6
821,230 - CSW01_18480 0.45 +1.5
821,280 + CSW01_18480 0.49 +0.9
821,280 + CSW01_18480 0.49 -1.7
821,288 - CSW01_18480 0.49 -1.0
821,288 - CSW01_18480 0.49 +0.1
821,288 - CSW01_18480 0.49 -0.2
821,288 - CSW01_18480 0.49 -1.5
821,361 - CSW01_18480 0.54 +0.2
821,381 + CSW01_18480 0.56 +0.9
821,397 + CSW01_18480 0.57 +0.0
821,505 - CSW01_18480 0.65 +0.1
821,562 - CSW01_18480 0.69 -1.7
821,805 - CSW01_18480 0.86 +1.2
821,807 + CSW01_18480 0.86 -0.4
821,815 - CSW01_18480 0.86 +0.9
821,897 + +0.4
821,968 + -1.7
821,968 + -0.7
821,974 - -1.2
822,134 - +0.3
822,226 - -0.6
822,233 - +0.6
822,304 - CSW01_18485 0.10 +0.6
822,510 + CSW01_18485 0.23 +0.2
822,510 + CSW01_18485 0.23 -0.2
822,526 - CSW01_18485 0.24 -1.5
822,541 + CSW01_18485 0.25 -0.2
822,620 + CSW01_18485 0.30 +1.1
822,623 - CSW01_18485 0.31 +0.5
822,623 - CSW01_18485 0.31 -0.6
822,655 - CSW01_18485 0.33 +0.8
822,691 + CSW01_18485 0.35 -0.1
822,691 + CSW01_18485 0.35 -0.2
822,691 + CSW01_18485 0.35 -0.6
822,948 - CSW01_18485 0.51 -0.7
822,967 - CSW01_18485 0.52 -1.6
823,010 + CSW01_18485 0.55 +1.1
823,021 + CSW01_18485 0.55 -0.3
823,064 + CSW01_18485 0.58 -0.4
823,137 - CSW01_18485 0.63 -0.6
823,282 + CSW01_18485 0.72 +0.6
823,297 - CSW01_18485 0.73 +0.3
823,349 - CSW01_18485 0.76 -1.0
823,383 + CSW01_18485 0.78 +0.5
823,422 - CSW01_18485 0.81 -0.8
823,495 + CSW01_18485 0.85 -0.1
823,503 - CSW01_18485 0.86 +0.2
823,503 - CSW01_18485 0.86 -1.1
823,580 + +0.8
823,690 - +0.4
823,697 - +1.2
823,788 + -3.0
823,788 + -0.1
823,980 - CSW01_18490 0.21 -1.3
823,999 + CSW01_18490 0.23 +0.6
824,013 + CSW01_18490 0.24 +0.2
824,240 - CSW01_18490 0.44 -0.7
824,285 + CSW01_18490 0.48 +0.7
824,285 + CSW01_18490 0.48 -1.5
824,285 + CSW01_18490 0.48 +0.4
824,285 + CSW01_18490 0.48 -3.8
824,285 + CSW01_18490 0.48 -0.1
824,285 + CSW01_18490 0.48 +1.9
824,285 + CSW01_18490 0.48 -0.7
824,285 + CSW01_18490 0.48 +1.2
824,285 + CSW01_18490 0.48 +0.8
824,285 + CSW01_18490 0.48 -0.4
824,285 + CSW01_18490 0.48 -1.3
824,293 - CSW01_18490 0.48 -0.2
824,293 - CSW01_18490 0.48 +0.8
824,293 - CSW01_18490 0.48 +0.3
824,293 - CSW01_18490 0.48 +0.0
824,295 + CSW01_18490 0.49 -0.7
824,295 + CSW01_18490 0.49 +0.4
824,295 + CSW01_18490 0.49 +0.6
824,295 + CSW01_18490 0.49 +0.5
824,295 + CSW01_18490 0.49 +0.2
824,303 - CSW01_18490 0.49 +0.6
824,303 - CSW01_18490 0.49 +0.4
824,303 - CSW01_18490 0.49 -1.1
824,303 - CSW01_18490 0.49 +0.1
824,356 + CSW01_18490 0.54 -1.7
824,397 + CSW01_18490 0.58 +1.2
824,397 + CSW01_18490 0.58 +0.5
824,397 + CSW01_18490 0.58 +0.4
824,405 - CSW01_18490 0.58 +2.0
824,405 - CSW01_18490 0.58 +0.9
824,439 + CSW01_18490 0.61 -0.2
824,446 + CSW01_18490 0.62 -0.7
824,454 - CSW01_18490 0.63 -1.0
824,504 - CSW01_18490 0.67 +0.3
824,535 + CSW01_18490 0.70 -0.2
824,543 - CSW01_18490 0.70 -0.0
824,551 - CSW01_18490 0.71 +0.6
824,578 + CSW01_18490 0.74 +1.8
824,581 - CSW01_18490 0.74 +0.4
824,609 + CSW01_18490 0.76 -0.5
824,609 + CSW01_18490 0.76 +1.6
824,609 + CSW01_18490 0.76 -0.8
824,609 + CSW01_18490 0.76 +0.4
824,609 + CSW01_18490 0.76 +0.6
824,614 + CSW01_18490 0.77 -0.1
824,614 + CSW01_18490 0.77 -0.1
824,617 - CSW01_18490 0.77 -0.4
824,617 - CSW01_18490 0.77 -0.8
824,617 - CSW01_18490 0.77 +1.1
824,618 - CSW01_18490 0.77 -1.3
824,691 + CSW01_18490 0.83 -0.0
824,691 + CSW01_18490 0.83 -2.2
824,691 + CSW01_18490 0.83 +0.5
824,691 + CSW01_18490 0.83 +0.5
824,699 - CSW01_18490 0.84 +1.2
824,699 - CSW01_18490 0.84 -0.3
824,699 - CSW01_18490 0.84 -0.3
824,699 - CSW01_18490 0.84 +1.3
824,709 + CSW01_18490 0.85 -0.1
824,711 - CSW01_18490 0.85 +0.9
824,717 - CSW01_18490 0.86 -0.3
824,717 - CSW01_18490 0.86 -2.0

Or see this region's nucleotide sequence