Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18410

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18405 and CSW01_18410 overlap by 13 nucleotidesCSW01_18410 and CSW01_18415 are separated by 8 nucleotidesCSW01_18415 and CSW01_18420 are separated by 161 nucleotidesCSW01_18420 and CSW01_18425 are separated by 7 nucleotides CSW01_18405: CSW01_18405 - ABC transporter permease, at 803,317 to 804,576 _18405 CSW01_18410: CSW01_18410 - ABC transporter ATP-binding protein, at 804,564 to 805,247 _18410 CSW01_18415: CSW01_18415 - hypothetical protein, at 805,256 to 805,927 _18415 CSW01_18420: CSW01_18420 - hypothetical protein, at 806,089 to 806,232 _18420 CSW01_18425: CSW01_18425 - oxidoreductase, at 806,240 to 807,163 _18425 Position (kb) 804 805 806Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 803.638 kb on - strand, within CSW01_18405at 803.671 kb on + strand, within CSW01_18405at 803.672 kb on + strand, within CSW01_18405at 803.672 kb on + strand, within CSW01_18405at 803.672 kb on + strand, within CSW01_18405at 803.672 kb on + strand, within CSW01_18405at 803.672 kb on + strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.809 kb on + strand, within CSW01_18405at 803.847 kb on - strand, within CSW01_18405at 803.855 kb on + strand, within CSW01_18405at 803.864 kb on + strand, within CSW01_18405at 803.896 kb on - strand, within CSW01_18405at 803.911 kb on - strand, within CSW01_18405at 803.913 kb on + strand, within CSW01_18405at 804.026 kb on + strand, within CSW01_18405at 804.063 kb on + strand, within CSW01_18405at 804.063 kb on + strand, within CSW01_18405at 804.063 kb on + strand, within CSW01_18405at 804.063 kb on + strand, within CSW01_18405at 804.063 kb on + strand, within CSW01_18405at 804.071 kb on - strand, within CSW01_18405at 804.071 kb on - strand, within CSW01_18405at 804.071 kb on - strand, within CSW01_18405at 804.071 kb on - strand, within CSW01_18405at 804.145 kb on + strand, within CSW01_18405at 804.145 kb on + strand, within CSW01_18405at 804.145 kb on + strand, within CSW01_18405at 804.162 kb on + strand, within CSW01_18405at 804.239 kb on + strand, within CSW01_18405at 804.257 kb on - strand, within CSW01_18405at 804.327 kb on + strand, within CSW01_18405at 804.352 kb on + strand, within CSW01_18405at 804.452 kb on - strandat 804.501 kb on + strandat 804.640 kb on - strand, within CSW01_18410at 804.645 kb on - strand, within CSW01_18410at 804.740 kb on - strand, within CSW01_18410at 804.884 kb on + strand, within CSW01_18410at 804.899 kb on + strand, within CSW01_18410at 805.001 kb on + strand, within CSW01_18410at 805.024 kb on + strand, within CSW01_18410at 805.024 kb on + strand, within CSW01_18410at 805.024 kb on + strand, within CSW01_18410at 805.032 kb on - strand, within CSW01_18410at 805.124 kb on + strand, within CSW01_18410at 805.132 kb on + strand, within CSW01_18410at 805.140 kb on - strand, within CSW01_18410at 805.149 kb on + strand, within CSW01_18410at 805.157 kb on - strand, within CSW01_18410at 805.157 kb on - strand, within CSW01_18410at 805.163 kb on + strand, within CSW01_18410at 805.163 kb on + strand, within CSW01_18410at 805.163 kb on + strand, within CSW01_18410at 805.181 kb on - strandat 805.182 kb on + strandat 805.182 kb on + strandat 805.187 kb on + strandat 805.190 kb on - strandat 805.253 kb on + strandat 805.253 kb on + strandat 805.253 kb on + strandat 805.274 kb on + strandat 805.282 kb on - strandat 805.282 kb on - strandat 805.282 kb on - strandat 805.337 kb on - strand, within CSW01_18415at 805.383 kb on - strand, within CSW01_18415at 805.464 kb on - strand, within CSW01_18415at 805.561 kb on + strand, within CSW01_18415at 805.569 kb on - strand, within CSW01_18415at 805.569 kb on - strand, within CSW01_18415at 805.577 kb on + strand, within CSW01_18415at 805.707 kb on - strand, within CSW01_18415at 805.709 kb on + strand, within CSW01_18415at 805.724 kb on + strand, within CSW01_18415at 805.778 kb on + strand, within CSW01_18415at 805.813 kb on + strand, within CSW01_18415at 805.813 kb on + strand, within CSW01_18415at 805.822 kb on - strand, within CSW01_18415at 805.826 kb on + strand, within CSW01_18415at 805.856 kb on + strand, within CSW01_18415at 805.983 kb on - strandat 806.079 kb on - strandat 806.135 kb on + strand, within CSW01_18420at 806.196 kb on + strand, within CSW01_18420at 806.196 kb on + strand, within CSW01_18420at 806.204 kb on - strand, within CSW01_18420at 806.209 kb on + strand, within CSW01_18420at 806.237 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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803,638 - CSW01_18405 0.25 +0.7
803,671 + CSW01_18405 0.28 -0.3
803,672 + CSW01_18405 0.28 +0.9
803,672 + CSW01_18405 0.28 +0.2
803,672 + CSW01_18405 0.28 +1.0
803,672 + CSW01_18405 0.28 -0.3
803,672 + CSW01_18405 0.28 -1.2
803,680 - CSW01_18405 0.29 +0.3
803,680 - CSW01_18405 0.29 +0.7
803,680 - CSW01_18405 0.29 -0.1
803,680 - CSW01_18405 0.29 -3.0
803,680 - CSW01_18405 0.29 +0.1
803,680 - CSW01_18405 0.29 +0.2
803,680 - CSW01_18405 0.29 +1.7
803,809 + CSW01_18405 0.39 -0.6
803,847 - CSW01_18405 0.42 +0.6
803,855 + CSW01_18405 0.43 +0.0
803,864 + CSW01_18405 0.43 -0.1
803,896 - CSW01_18405 0.46 +1.7
803,911 - CSW01_18405 0.47 -0.4
803,913 + CSW01_18405 0.47 -0.5
804,026 + CSW01_18405 0.56 +0.2
804,063 + CSW01_18405 0.59 +0.1
804,063 + CSW01_18405 0.59 -0.3
804,063 + CSW01_18405 0.59 -0.4
804,063 + CSW01_18405 0.59 -2.0
804,063 + CSW01_18405 0.59 -0.3
804,071 - CSW01_18405 0.60 -0.5
804,071 - CSW01_18405 0.60 -0.3
804,071 - CSW01_18405 0.60 +0.8
804,071 - CSW01_18405 0.60 +1.0
804,145 + CSW01_18405 0.66 +0.1
804,145 + CSW01_18405 0.66 -1.5
804,145 + CSW01_18405 0.66 -1.0
804,162 + CSW01_18405 0.67 +2.7
804,239 + CSW01_18405 0.73 +0.3
804,257 - CSW01_18405 0.75 -2.4
804,327 + CSW01_18405 0.80 +1.7
804,352 + CSW01_18405 0.82 +0.3
804,452 - +0.3
804,501 + -0.6
804,640 - CSW01_18410 0.11 -0.2
804,645 - CSW01_18410 0.12 -0.4
804,740 - CSW01_18410 0.26 +0.9
804,884 + CSW01_18410 0.47 -0.2
804,899 + CSW01_18410 0.49 -0.2
805,001 + CSW01_18410 0.64 +1.4
805,024 + CSW01_18410 0.67 +0.7
805,024 + CSW01_18410 0.67 +0.2
805,024 + CSW01_18410 0.67 -0.3
805,032 - CSW01_18410 0.68 -0.6
805,124 + CSW01_18410 0.82 +1.6
805,132 + CSW01_18410 0.83 -1.3
805,140 - CSW01_18410 0.84 -0.4
805,149 + CSW01_18410 0.86 -0.1
805,157 - CSW01_18410 0.87 -2.3
805,157 - CSW01_18410 0.87 -0.1
805,163 + CSW01_18410 0.88 -1.1
805,163 + CSW01_18410 0.88 +0.1
805,163 + CSW01_18410 0.88 +0.2
805,181 - -0.9
805,182 + +0.6
805,182 + +0.2
805,187 + -1.3
805,190 - -0.4
805,253 + -0.5
805,253 + -1.3
805,253 + +0.1
805,274 + +0.3
805,282 - -0.4
805,282 - -1.1
805,282 - -1.6
805,337 - CSW01_18415 0.12 -0.1
805,383 - CSW01_18415 0.19 +0.5
805,464 - CSW01_18415 0.31 -0.1
805,561 + CSW01_18415 0.45 +1.1
805,569 - CSW01_18415 0.47 -1.0
805,569 - CSW01_18415 0.47 +0.6
805,577 + CSW01_18415 0.48 +0.3
805,707 - CSW01_18415 0.67 -0.5
805,709 + CSW01_18415 0.67 -2.1
805,724 + CSW01_18415 0.70 +1.1
805,778 + CSW01_18415 0.78 -1.4
805,813 + CSW01_18415 0.83 -1.7
805,813 + CSW01_18415 0.83 -0.2
805,822 - CSW01_18415 0.84 -2.8
805,826 + CSW01_18415 0.85 -2.5
805,856 + CSW01_18415 0.89 -0.7
805,983 - +0.5
806,079 - +3.0
806,135 + CSW01_18420 0.32 +0.9
806,196 + CSW01_18420 0.74 +0.5
806,196 + CSW01_18420 0.74 -1.7
806,204 - CSW01_18420 0.80 -2.1
806,209 + CSW01_18420 0.83 +0.2
806,237 - -3.2

Or see this region's nucleotide sequence