Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18055 and CSW01_18060 are separated by 3 nucleotides CSW01_18060 and CSW01_18065 are separated by 109 nucleotides CSW01_18065 and CSW01_18070 are separated by 51 nucleotides
CSW01_18055: CSW01_18055 - hypothetical protein, at 716,312 to 717,052
_18055
CSW01_18060: CSW01_18060 - allophanate hydrolase, at 717,056 to 717,766
_18060
CSW01_18065: CSW01_18065 - allophanate hydrolase, at 717,876 to 718,805
_18065
CSW01_18070: CSW01_18070 - FAD-dependent oxidoreductase, at 718,857 to 720,290
_18070
Position (kb) 717
718
719 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 716.876 kb on + strand, within CSW01_18055 at 716.951 kb on - strand, within CSW01_18055 at 716.987 kb on - strand at 716.987 kb on - strand at 717.001 kb on + strand at 717.101 kb on - strand at 717.166 kb on + strand, within CSW01_18060 at 717.183 kb on + strand, within CSW01_18060 at 717.246 kb on + strand, within CSW01_18060 at 717.371 kb on - strand, within CSW01_18060 at 717.516 kb on + strand, within CSW01_18060 at 717.785 kb on - strand at 717.785 kb on - strand at 717.801 kb on - strand at 717.814 kb on + strand at 717.998 kb on - strand, within CSW01_18065 at 718.084 kb on - strand, within CSW01_18065 at 718.237 kb on + strand, within CSW01_18065 at 718.249 kb on + strand, within CSW01_18065 at 718.249 kb on + strand, within CSW01_18065 at 718.249 kb on + strand, within CSW01_18065 at 718.249 kb on + strand, within CSW01_18065 at 718.249 kb on + strand, within CSW01_18065 at 718.249 kb on + strand, within CSW01_18065 at 718.287 kb on + strand, within CSW01_18065 at 718.288 kb on + strand, within CSW01_18065 at 718.295 kb on - strand, within CSW01_18065 at 718.295 kb on - strand, within CSW01_18065 at 718.295 kb on - strand, within CSW01_18065 at 718.312 kb on + strand, within CSW01_18065 at 718.329 kb on + strand, within CSW01_18065 at 718.337 kb on - strand, within CSW01_18065 at 718.401 kb on + strand, within CSW01_18065 at 718.416 kb on + strand, within CSW01_18065 at 718.539 kb on + strand, within CSW01_18065 at 718.547 kb on - strand, within CSW01_18065 at 718.568 kb on - strand, within CSW01_18065 at 718.702 kb on + strand, within CSW01_18065 at 718.863 kb on + strand at 718.946 kb on + strand at 718.950 kb on - strand at 719.004 kb on - strand, within CSW01_18070 at 719.032 kb on + strand, within CSW01_18070 at 719.109 kb on + strand, within CSW01_18070 at 719.153 kb on - strand, within CSW01_18070 at 719.278 kb on + strand, within CSW01_18070 at 719.325 kb on - strand, within CSW01_18070 at 719.386 kb on + strand, within CSW01_18070 at 719.387 kb on - strand, within CSW01_18070 at 719.394 kb on - strand, within CSW01_18070 at 719.483 kb on - strand, within CSW01_18070 at 719.493 kb on - strand, within CSW01_18070 at 719.493 kb on - strand, within CSW01_18070 at 719.644 kb on + strand, within CSW01_18070 at 719.682 kb on + strand, within CSW01_18070 at 719.682 kb on + strand, within CSW01_18070 at 719.696 kb on - strand, within CSW01_18070 at 719.737 kb on - strand, within CSW01_18070 at 719.737 kb on - strand, within CSW01_18070 at 719.769 kb on - strand, within CSW01_18070 at 719.782 kb on - strand, within CSW01_18070 at 719.782 kb on - strand, within CSW01_18070
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A remove 716,876 + CSW01_18055 0.76 +0.5 716,951 - CSW01_18055 0.86 -0.7 716,987 - -0.1 716,987 - -1.0 717,001 + +0.0 717,101 - -0.5 717,166 + CSW01_18060 0.15 +0.5 717,183 + CSW01_18060 0.18 +0.2 717,246 + CSW01_18060 0.27 -0.4 717,371 - CSW01_18060 0.44 -0.6 717,516 + CSW01_18060 0.65 -1.1 717,785 - -1.0 717,785 - +0.2 717,801 - +0.6 717,814 + -1.7 717,998 - CSW01_18065 0.13 -0.8 718,084 - CSW01_18065 0.22 +0.1 718,237 + CSW01_18065 0.39 -1.2 718,249 + CSW01_18065 0.40 -0.8 718,249 + CSW01_18065 0.40 -0.0 718,249 + CSW01_18065 0.40 -4.2 718,249 + CSW01_18065 0.40 -0.3 718,249 + CSW01_18065 0.40 -0.8 718,249 + CSW01_18065 0.40 -0.8 718,287 + CSW01_18065 0.44 +0.0 718,288 + CSW01_18065 0.44 -0.8 718,295 - CSW01_18065 0.45 +0.6 718,295 - CSW01_18065 0.45 -0.9 718,295 - CSW01_18065 0.45 -1.5 718,312 + CSW01_18065 0.47 -0.7 718,329 + CSW01_18065 0.49 -0.1 718,337 - CSW01_18065 0.50 -0.9 718,401 + CSW01_18065 0.56 -1.6 718,416 + CSW01_18065 0.58 -0.4 718,539 + CSW01_18065 0.71 -0.2 718,547 - CSW01_18065 0.72 -2.5 718,568 - CSW01_18065 0.74 -0.8 718,702 + CSW01_18065 0.89 -0.1 718,863 + +0.2 718,946 + -0.9 718,950 - +1.6 719,004 - CSW01_18070 0.10 +0.9 719,032 + CSW01_18070 0.12 +0.3 719,109 + CSW01_18070 0.18 -1.5 719,153 - CSW01_18070 0.21 +0.9 719,278 + CSW01_18070 0.29 +1.9 719,325 - CSW01_18070 0.33 -1.4 719,386 + CSW01_18070 0.37 -1.1 719,387 - CSW01_18070 0.37 -1.1 719,394 - CSW01_18070 0.37 -0.1 719,483 - CSW01_18070 0.44 +0.1 719,493 - CSW01_18070 0.44 +0.1 719,493 - CSW01_18070 0.44 +0.5 719,644 + CSW01_18070 0.55 -0.8 719,682 + CSW01_18070 0.58 -1.2 719,682 + CSW01_18070 0.58 +2.3 719,696 - CSW01_18070 0.59 -0.2 719,737 - CSW01_18070 0.61 +0.6 719,737 - CSW01_18070 0.61 -2.2 719,769 - CSW01_18070 0.64 -0.8 719,782 - CSW01_18070 0.65 -0.0 719,782 - CSW01_18070 0.65 -0.1
Or see this region's nucleotide sequence