Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17835

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17830 and CSW01_17835 are separated by 202 nucleotidesCSW01_17835 and CSW01_17840 are separated by 40 nucleotidesCSW01_17840 and CSW01_17845 are separated by 37 nucleotidesCSW01_17845 and CSW01_17850 are separated by 198 nucleotides CSW01_17830: CSW01_17830 - hypothetical protein, at 676,078 to 676,383 _17830 CSW01_17835: CSW01_17835 - hypothetical protein, at 676,586 to 676,984 _17835 CSW01_17840: CSW01_17840 - hypothetical protein, at 677,025 to 677,177 _17840 CSW01_17845: CSW01_17845 - hypothetical protein, at 677,215 to 677,754 _17845 CSW01_17850: CSW01_17850 - flagellar brake protein, at 677,953 to 678,663 _17850 Position (kb) 676 677Strain fitness (log2 ratio) -1 0 1 2 3 4at 675.600 kb on - strandat 675.635 kb on + strandat 675.834 kb on + strandat 675.834 kb on + strandat 675.834 kb on + strandat 675.842 kb on - strandat 675.842 kb on - strandat 675.842 kb on - strandat 675.842 kb on - strandat 675.943 kb on + strandat 675.961 kb on + strandat 675.983 kb on - strandat 675.993 kb on + strandat 676.008 kb on - strandat 676.070 kb on + strandat 676.100 kb on - strandat 676.111 kb on + strand, within CSW01_17830at 676.241 kb on + strand, within CSW01_17830at 676.273 kb on + strand, within CSW01_17830at 676.275 kb on - strand, within CSW01_17830at 676.415 kb on + strandat 676.531 kb on + strandat 676.531 kb on + strandat 676.539 kb on - strandat 676.764 kb on + strand, within CSW01_17835at 676.824 kb on + strand, within CSW01_17835at 676.832 kb on - strand, within CSW01_17835at 676.905 kb on + strand, within CSW01_17835at 676.998 kb on - strandat 677.117 kb on - strand, within CSW01_17840at 677.270 kb on + strand, within CSW01_17845at 677.270 kb on + strand, within CSW01_17845at 677.270 kb on + strand, within CSW01_17845at 677.278 kb on - strand, within CSW01_17845at 677.278 kb on - strand, within CSW01_17845at 677.285 kb on + strand, within CSW01_17845at 677.293 kb on - strand, within CSW01_17845at 677.293 kb on - strand, within CSW01_17845at 677.357 kb on + strand, within CSW01_17845at 677.503 kb on + strand, within CSW01_17845at 677.527 kb on + strand, within CSW01_17845at 677.572 kb on - strand, within CSW01_17845at 677.677 kb on - strand, within CSW01_17845at 677.687 kb on + strand, within CSW01_17845at 677.687 kb on + strand, within CSW01_17845at 677.695 kb on - strand, within CSW01_17845at 677.748 kb on + strandat 677.748 kb on + strandat 677.805 kb on - strandat 677.810 kb on - strandat 677.832 kb on + strandat 677.840 kb on - strandat 677.941 kb on - strandat 677.953 kb on + strandat 677.953 kb on - strandat 677.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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675,600 - -0.8
675,635 + -1.7
675,834 + +0.9
675,834 + -1.1
675,834 + +0.2
675,842 - +1.2
675,842 - +1.7
675,842 - +1.6
675,842 - -0.4
675,943 + -0.4
675,961 + -1.2
675,983 - +3.2
675,993 + -0.0
676,008 - -0.0
676,070 + +0.1
676,100 - -0.4
676,111 + CSW01_17830 0.11 -0.2
676,241 + CSW01_17830 0.53 +2.5
676,273 + CSW01_17830 0.64 -0.5
676,275 - CSW01_17830 0.64 +3.2
676,415 + -1.7
676,531 + +1.2
676,531 + -0.4
676,539 - -0.5
676,764 + CSW01_17835 0.45 +0.5
676,824 + CSW01_17835 0.60 -0.2
676,832 - CSW01_17835 0.62 +0.8
676,905 + CSW01_17835 0.80 +0.6
676,998 - -0.4
677,117 - CSW01_17840 0.60 +1.2
677,270 + CSW01_17845 0.10 -0.3
677,270 + CSW01_17845 0.10 +1.0
677,270 + CSW01_17845 0.10 +1.0
677,278 - CSW01_17845 0.12 +0.2
677,278 - CSW01_17845 0.12 -1.5
677,285 + CSW01_17845 0.13 -0.7
677,293 - CSW01_17845 0.14 -0.0
677,293 - CSW01_17845 0.14 +0.0
677,357 + CSW01_17845 0.26 +0.7
677,503 + CSW01_17845 0.53 -1.0
677,527 + CSW01_17845 0.58 +0.2
677,572 - CSW01_17845 0.66 -0.5
677,677 - CSW01_17845 0.86 -0.5
677,687 + CSW01_17845 0.87 -0.9
677,687 + CSW01_17845 0.87 +0.2
677,695 - CSW01_17845 0.89 +0.7
677,748 + -0.5
677,748 + -1.2
677,805 - +3.8
677,810 - +1.1
677,832 + +0.1
677,840 - +0.3
677,941 - -1.3
677,953 + +0.0
677,953 - -0.4
677,961 - -0.3

Or see this region's nucleotide sequence