Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17490 and CSW01_17495 are separated by 346 nucleotides CSW01_17495 and CSW01_17500 are separated by 101 nucleotides
CSW01_17490: CSW01_17490 - aminoimidazole riboside kinase, at 589,808 to 590,779
_17490
CSW01_17495: CSW01_17495 - glycerol-3-phosphate dehydrogenase, at 591,126 to 592,664
_17495
CSW01_17500: CSW01_17500 - methyl-accepting chemotaxis protein, at 592,766 to 594,376
_17500
Position (kb) 591
592
593 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 590.233 kb on + strand, within CSW01_17490 at 590.241 kb on - strand, within CSW01_17490 at 590.265 kb on - strand, within CSW01_17490 at 590.288 kb on - strand, within CSW01_17490 at 590.397 kb on - strand, within CSW01_17490 at 590.452 kb on + strand, within CSW01_17490 at 590.452 kb on + strand, within CSW01_17490 at 590.460 kb on - strand, within CSW01_17490 at 590.461 kb on + strand, within CSW01_17490 at 590.497 kb on - strand, within CSW01_17490 at 590.508 kb on - strand, within CSW01_17490 at 590.807 kb on + strand at 590.940 kb on - strand at 591.139 kb on + strand at 591.297 kb on - strand, within CSW01_17495 at 591.297 kb on - strand, within CSW01_17495 at 591.299 kb on + strand, within CSW01_17495 at 591.309 kb on + strand, within CSW01_17495 at 591.327 kb on - strand, within CSW01_17495 at 591.327 kb on - strand, within CSW01_17495 at 591.327 kb on - strand, within CSW01_17495 at 591.397 kb on + strand, within CSW01_17495 at 591.405 kb on - strand, within CSW01_17495 at 591.659 kb on - strand, within CSW01_17495 at 591.667 kb on - strand, within CSW01_17495 at 591.784 kb on - strand, within CSW01_17495 at 591.812 kb on + strand, within CSW01_17495 at 591.812 kb on + strand, within CSW01_17495 at 591.817 kb on + strand, within CSW01_17495 at 591.887 kb on + strand, within CSW01_17495 at 591.887 kb on + strand, within CSW01_17495 at 591.889 kb on + strand, within CSW01_17495 at 591.895 kb on - strand, within CSW01_17495 at 591.895 kb on - strand, within CSW01_17495 at 591.895 kb on - strand, within CSW01_17495 at 592.153 kb on + strand, within CSW01_17495 at 592.153 kb on + strand, within CSW01_17495 at 592.153 kb on + strand, within CSW01_17495 at 592.404 kb on + strand, within CSW01_17495 at 592.480 kb on + strand, within CSW01_17495 at 592.492 kb on + strand, within CSW01_17495 at 592.498 kb on - strand, within CSW01_17495 at 592.585 kb on + strand at 592.906 kb on + strand at 592.906 kb on + strand at 592.913 kb on + strand at 592.933 kb on + strand, within CSW01_17500 at 592.974 kb on - strand, within CSW01_17500 at 593.020 kb on + strand, within CSW01_17500 at 593.068 kb on - strand, within CSW01_17500 at 593.077 kb on + strand, within CSW01_17500 at 593.077 kb on + strand, within CSW01_17500 at 593.174 kb on + strand, within CSW01_17500 at 593.179 kb on + strand, within CSW01_17500 at 593.276 kb on - strand, within CSW01_17500 at 593.305 kb on + strand, within CSW01_17500 at 593.313 kb on - strand, within CSW01_17500 at 593.313 kb on - strand, within CSW01_17500 at 593.313 kb on - strand, within CSW01_17500 at 593.323 kb on - strand, within CSW01_17500 at 593.465 kb on + strand, within CSW01_17500 at 593.473 kb on - strand, within CSW01_17500 at 593.473 kb on - strand, within CSW01_17500 at 593.555 kb on - strand, within CSW01_17500 at 593.611 kb on - strand, within CSW01_17500
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A remove 590,233 + CSW01_17490 0.44 -2.8 590,241 - CSW01_17490 0.45 +0.3 590,265 - CSW01_17490 0.47 -2.7 590,288 - CSW01_17490 0.49 +0.4 590,397 - CSW01_17490 0.61 -1.0 590,452 + CSW01_17490 0.66 -0.6 590,452 + CSW01_17490 0.66 -1.8 590,460 - CSW01_17490 0.67 -0.9 590,461 + CSW01_17490 0.67 -0.1 590,497 - CSW01_17490 0.71 -1.0 590,508 - CSW01_17490 0.72 -0.3 590,807 + +0.4 590,940 - -0.8 591,139 + +1.0 591,297 - CSW01_17495 0.11 +0.0 591,297 - CSW01_17495 0.11 +0.3 591,299 + CSW01_17495 0.11 +0.3 591,309 + CSW01_17495 0.12 -0.4 591,327 - CSW01_17495 0.13 +0.7 591,327 - CSW01_17495 0.13 -0.4 591,327 - CSW01_17495 0.13 -0.3 591,397 + CSW01_17495 0.18 +0.3 591,405 - CSW01_17495 0.18 -0.1 591,659 - CSW01_17495 0.35 +0.3 591,667 - CSW01_17495 0.35 +1.2 591,784 - CSW01_17495 0.43 -1.0 591,812 + CSW01_17495 0.45 +0.5 591,812 + CSW01_17495 0.45 +1.3 591,817 + CSW01_17495 0.45 +0.7 591,887 + CSW01_17495 0.49 -0.8 591,887 + CSW01_17495 0.49 -1.0 591,889 + CSW01_17495 0.50 +0.3 591,895 - CSW01_17495 0.50 +0.3 591,895 - CSW01_17495 0.50 -0.1 591,895 - CSW01_17495 0.50 -2.0 592,153 + CSW01_17495 0.67 -0.9 592,153 + CSW01_17495 0.67 -0.4 592,153 + CSW01_17495 0.67 -1.4 592,404 + CSW01_17495 0.83 -0.4 592,480 + CSW01_17495 0.88 -0.3 592,492 + CSW01_17495 0.89 -0.5 592,498 - CSW01_17495 0.89 +2.6 592,585 + -0.2 592,906 + +0.7 592,906 + -0.1 592,913 + +0.8 592,933 + CSW01_17500 0.10 -0.1 592,974 - CSW01_17500 0.13 -0.1 593,020 + CSW01_17500 0.16 +0.7 593,068 - CSW01_17500 0.19 +0.5 593,077 + CSW01_17500 0.19 -0.7 593,077 + CSW01_17500 0.19 -2.7 593,174 + CSW01_17500 0.25 -0.2 593,179 + CSW01_17500 0.26 +0.3 593,276 - CSW01_17500 0.32 +1.3 593,305 + CSW01_17500 0.33 +0.3 593,313 - CSW01_17500 0.34 -3.3 593,313 - CSW01_17500 0.34 -0.2 593,313 - CSW01_17500 0.34 +0.7 593,323 - CSW01_17500 0.35 -0.8 593,465 + CSW01_17500 0.43 -0.0 593,473 - CSW01_17500 0.44 +0.8 593,473 - CSW01_17500 0.44 -0.6 593,555 - CSW01_17500 0.49 +1.0 593,611 - CSW01_17500 0.52 -0.1
Or see this region's nucleotide sequence