Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17330 and CSW01_17335 are separated by 116 nucleotides CSW01_17335 and CSW01_17340 are separated by 213 nucleotides
CSW01_17330: CSW01_17330 - transketolase, at 556,296 to 558,338
_17330
CSW01_17335: CSW01_17335 - ligand-gated channel, at 558,455 to 560,809
_17335
CSW01_17340: CSW01_17340 - 23S rRNA methyltransferase, at 561,023 to 561,535
_17340
Position (kb) 558
559
560
561 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 557.739 kb on - strand, within CSW01_17330 at 558.007 kb on - strand, within CSW01_17330 at 558.526 kb on - strand at 558.681 kb on - strand at 558.819 kb on + strand, within CSW01_17335 at 558.827 kb on - strand, within CSW01_17335 at 558.933 kb on + strand, within CSW01_17335 at 559.033 kb on + strand, within CSW01_17335 at 559.162 kb on + strand, within CSW01_17335 at 559.263 kb on - strand, within CSW01_17335 at 559.544 kb on + strand, within CSW01_17335 at 559.559 kb on + strand, within CSW01_17335 at 559.567 kb on - strand, within CSW01_17335 at 559.567 kb on - strand, within CSW01_17335 at 559.613 kb on - strand, within CSW01_17335 at 559.635 kb on - strand, within CSW01_17335 at 559.688 kb on + strand, within CSW01_17335 at 559.766 kb on + strand, within CSW01_17335 at 559.787 kb on - strand, within CSW01_17335 at 559.809 kb on + strand, within CSW01_17335 at 559.913 kb on - strand, within CSW01_17335 at 559.915 kb on + strand, within CSW01_17335 at 559.915 kb on + strand, within CSW01_17335 at 559.984 kb on + strand, within CSW01_17335 at 559.992 kb on - strand, within CSW01_17335 at 560.031 kb on + strand, within CSW01_17335 at 560.031 kb on + strand, within CSW01_17335 at 560.203 kb on + strand, within CSW01_17335 at 560.203 kb on + strand, within CSW01_17335 at 560.208 kb on + strand, within CSW01_17335 at 560.209 kb on - strand, within CSW01_17335 at 560.226 kb on + strand, within CSW01_17335 at 560.288 kb on + strand, within CSW01_17335 at 560.295 kb on + strand, within CSW01_17335 at 560.296 kb on - strand, within CSW01_17335 at 560.303 kb on + strand, within CSW01_17335 at 560.337 kb on - strand, within CSW01_17335 at 560.382 kb on - strand, within CSW01_17335 at 560.382 kb on - strand, within CSW01_17335 at 560.496 kb on + strand, within CSW01_17335 at 560.504 kb on - strand, within CSW01_17335 at 560.512 kb on - strand, within CSW01_17335 at 560.558 kb on + strand, within CSW01_17335 at 560.642 kb on + strand at 560.642 kb on + strand at 560.645 kb on - strand at 560.695 kb on - strand at 560.833 kb on + strand at 560.994 kb on - strand at 561.186 kb on + strand, within CSW01_17340 at 561.266 kb on - strand, within CSW01_17340 at 561.405 kb on + strand, within CSW01_17340 at 561.413 kb on - strand, within CSW01_17340 at 561.413 kb on - strand, within CSW01_17340 at 561.437 kb on - strand, within CSW01_17340 at 561.482 kb on + strand, within CSW01_17340 at 561.531 kb on + strand at 561.539 kb on - strand at 561.666 kb on + strand at 561.674 kb on - strand at 561.674 kb on - strand at 561.674 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A remove 557,739 - CSW01_17330 0.71 -0.5 558,007 - CSW01_17330 0.84 -0.9 558,526 - +0.5 558,681 - +0.2 558,819 + CSW01_17335 0.15 +0.4 558,827 - CSW01_17335 0.16 +0.6 558,933 + CSW01_17335 0.20 +0.0 559,033 + CSW01_17335 0.25 +0.0 559,162 + CSW01_17335 0.30 -2.1 559,263 - CSW01_17335 0.34 -1.2 559,544 + CSW01_17335 0.46 +0.6 559,559 + CSW01_17335 0.47 -1.7 559,567 - CSW01_17335 0.47 -0.7 559,567 - CSW01_17335 0.47 -1.2 559,613 - CSW01_17335 0.49 -0.3 559,635 - CSW01_17335 0.50 +0.8 559,688 + CSW01_17335 0.52 +0.7 559,766 + CSW01_17335 0.56 -0.3 559,787 - CSW01_17335 0.57 +0.2 559,809 + CSW01_17335 0.57 -1.0 559,913 - CSW01_17335 0.62 -0.6 559,915 + CSW01_17335 0.62 +1.0 559,915 + CSW01_17335 0.62 +1.1 559,984 + CSW01_17335 0.65 -1.1 559,992 - CSW01_17335 0.65 -2.0 560,031 + CSW01_17335 0.67 -0.3 560,031 + CSW01_17335 0.67 +0.6 560,203 + CSW01_17335 0.74 -0.9 560,203 + CSW01_17335 0.74 -0.6 560,208 + CSW01_17335 0.74 +1.4 560,209 - CSW01_17335 0.74 -2.2 560,226 + CSW01_17335 0.75 +0.1 560,288 + CSW01_17335 0.78 -0.7 560,295 + CSW01_17335 0.78 +0.3 560,296 - CSW01_17335 0.78 -1.4 560,303 + CSW01_17335 0.78 -0.3 560,337 - CSW01_17335 0.80 +0.2 560,382 - CSW01_17335 0.82 -2.1 560,382 - CSW01_17335 0.82 -2.7 560,496 + CSW01_17335 0.87 -2.5 560,504 - CSW01_17335 0.87 +0.5 560,512 - CSW01_17335 0.87 -2.3 560,558 + CSW01_17335 0.89 -0.0 560,642 + +1.6 560,642 + -0.0 560,645 - -0.6 560,695 - +0.1 560,833 + +1.4 560,994 - +0.3 561,186 + CSW01_17340 0.32 +0.8 561,266 - CSW01_17340 0.47 +0.3 561,405 + CSW01_17340 0.74 +0.3 561,413 - CSW01_17340 0.76 +0.4 561,413 - CSW01_17340 0.76 -1.0 561,437 - CSW01_17340 0.81 -2.0 561,482 + CSW01_17340 0.89 -0.3 561,531 + +0.8 561,539 - -0.7 561,666 + -0.8 561,674 - -3.3 561,674 - +0.4 561,674 - +0.6
Or see this region's nucleotide sequence