Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17065

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17055 and CSW01_17060 overlap by 4 nucleotidesCSW01_17060 and CSW01_17065 are separated by 60 nucleotidesCSW01_17065 and CSW01_17070 are separated by 40 nucleotidesCSW01_17070 and CSW01_17075 are separated by 584 nucleotides CSW01_17055: CSW01_17055 - DNA-binding response regulator, at 502,909 to 503,565 _17055 CSW01_17060: CSW01_17060 - DUF2861 domain-containing protein, at 503,562 to 504,452 _17060 CSW01_17065: CSW01_17065 - conjugal transfer protein TraF, at 504,513 to 505,679 _17065 CSW01_17070: CSW01_17070 - YoaH family protein, at 505,720 to 505,881 _17070 CSW01_17075: CSW01_17075 - stress response translation initiation inhibitor YciH, at 506,466 to 506,777 _17075 Position (kb) 504 505 506Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 503.548 kb on - strandat 503.560 kb on - strandat 503.609 kb on + strandat 503.609 kb on + strandat 503.766 kb on + strand, within CSW01_17060at 503.802 kb on + strand, within CSW01_17060at 504.023 kb on + strand, within CSW01_17060at 504.094 kb on - strand, within CSW01_17060at 504.110 kb on - strand, within CSW01_17060at 504.140 kb on + strand, within CSW01_17060at 504.442 kb on - strandat 504.549 kb on + strandat 504.622 kb on + strandat 504.749 kb on + strand, within CSW01_17065at 504.858 kb on + strand, within CSW01_17065at 504.880 kb on + strand, within CSW01_17065at 504.888 kb on - strand, within CSW01_17065at 504.935 kb on + strand, within CSW01_17065at 504.935 kb on + strand, within CSW01_17065at 504.943 kb on - strand, within CSW01_17065at 504.943 kb on - strand, within CSW01_17065at 505.065 kb on + strand, within CSW01_17065at 505.134 kb on + strand, within CSW01_17065at 505.142 kb on - strand, within CSW01_17065at 505.413 kb on - strand, within CSW01_17065at 505.519 kb on + strand, within CSW01_17065at 505.701 kb on + strandat 505.701 kb on + strandat 505.701 kb on + strandat 505.739 kb on + strand, within CSW01_17070at 505.739 kb on + strand, within CSW01_17070at 505.805 kb on + strand, within CSW01_17070at 506.007 kb on + strandat 506.128 kb on - strandat 506.520 kb on - strand, within CSW01_17075at 506.638 kb on - strand, within CSW01_17075at 506.639 kb on - strand, within CSW01_17075

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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503,548 - -0.6
503,560 - -2.8
503,609 + +1.2
503,609 + +0.0
503,766 + CSW01_17060 0.23 -0.8
503,802 + CSW01_17060 0.27 -1.9
504,023 + CSW01_17060 0.52 +0.6
504,094 - CSW01_17060 0.60 +1.3
504,110 - CSW01_17060 0.62 +1.0
504,140 + CSW01_17060 0.65 +0.4
504,442 - +1.5
504,549 + -0.2
504,622 + +0.4
504,749 + CSW01_17065 0.20 +0.8
504,858 + CSW01_17065 0.30 -1.3
504,880 + CSW01_17065 0.31 -0.3
504,888 - CSW01_17065 0.32 -2.5
504,935 + CSW01_17065 0.36 -1.1
504,935 + CSW01_17065 0.36 -1.6
504,943 - CSW01_17065 0.37 -1.3
504,943 - CSW01_17065 0.37 +2.3
505,065 + CSW01_17065 0.47 +0.1
505,134 + CSW01_17065 0.53 +0.6
505,142 - CSW01_17065 0.54 -0.4
505,413 - CSW01_17065 0.77 +0.5
505,519 + CSW01_17065 0.86 +0.5
505,701 + -0.5
505,701 + +0.3
505,701 + -0.5
505,739 + CSW01_17070 0.12 +1.2
505,739 + CSW01_17070 0.12 +0.2
505,805 + CSW01_17070 0.52 -1.5
506,007 + +0.3
506,128 - +2.1
506,520 - CSW01_17075 0.17 -0.6
506,638 - CSW01_17075 0.55 -0.8
506,639 - CSW01_17075 0.55 -0.3

Or see this region's nucleotide sequence