Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16815

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16810 and CSW01_16815 are separated by 57 nucleotidesCSW01_16815 and CSW01_16820 are separated by 233 nucleotides CSW01_16810: CSW01_16810 - aspartate/tyrosine/aromatic aminotransferase, at 441,186 to 442,367 _16810 CSW01_16815: CSW01_16815 - ATP-dependent zinc protease, at 442,425 to 443,108 _16815 CSW01_16820: CSW01_16820 - PTS fructose transporter subunit IIBC, at 443,342 to 445,084 _16820 Position (kb) 442 443 444Strain fitness (log2 ratio) -3 -2 -1 0 1at 441.444 kb on - strand, within CSW01_16810at 441.445 kb on + strand, within CSW01_16810at 441.580 kb on - strand, within CSW01_16810at 441.580 kb on - strand, within CSW01_16810at 441.835 kb on + strand, within CSW01_16810at 441.843 kb on - strand, within CSW01_16810at 441.882 kb on + strand, within CSW01_16810at 441.901 kb on - strand, within CSW01_16810at 441.935 kb on + strand, within CSW01_16810at 441.943 kb on - strand, within CSW01_16810at 441.994 kb on + strand, within CSW01_16810at 442.006 kb on + strand, within CSW01_16810at 442.007 kb on - strand, within CSW01_16810at 442.045 kb on + strand, within CSW01_16810at 442.063 kb on - strand, within CSW01_16810at 442.072 kb on + strand, within CSW01_16810at 442.129 kb on + strand, within CSW01_16810at 442.257 kb on - strandat 442.276 kb on - strandat 442.434 kb on + strandat 442.551 kb on + strand, within CSW01_16815at 442.595 kb on + strand, within CSW01_16815at 442.595 kb on + strand, within CSW01_16815at 442.602 kb on + strand, within CSW01_16815at 442.922 kb on + strand, within CSW01_16815at 442.922 kb on + strand, within CSW01_16815at 442.922 kb on + strand, within CSW01_16815at 442.922 kb on + strand, within CSW01_16815at 442.930 kb on - strand, within CSW01_16815at 442.930 kb on - strand, within CSW01_16815at 442.930 kb on - strand, within CSW01_16815at 442.930 kb on - strand, within CSW01_16815at 443.001 kb on + strand, within CSW01_16815at 443.001 kb on + strand, within CSW01_16815at 443.001 kb on + strand, within CSW01_16815at 443.411 kb on + strandat 443.514 kb on + strandat 443.544 kb on - strand, within CSW01_16820at 443.607 kb on + strand, within CSW01_16820at 443.618 kb on - strand, within CSW01_16820at 443.656 kb on + strand, within CSW01_16820at 443.702 kb on + strand, within CSW01_16820at 443.722 kb on - strand, within CSW01_16820at 443.793 kb on + strand, within CSW01_16820at 443.839 kb on + strand, within CSW01_16820at 443.839 kb on + strand, within CSW01_16820at 443.839 kb on + strand, within CSW01_16820at 443.839 kb on + strand, within CSW01_16820at 443.839 kb on + strand, within CSW01_16820at 443.839 kb on + strand, within CSW01_16820at 443.847 kb on - strand, within CSW01_16820at 443.847 kb on - strand, within CSW01_16820at 443.847 kb on - strand, within CSW01_16820at 443.847 kb on - strand, within CSW01_16820at 443.872 kb on - strand, within CSW01_16820at 444.000 kb on + strand, within CSW01_16820

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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441,444 - CSW01_16810 0.22 -0.1
441,445 + CSW01_16810 0.22 +0.3
441,580 - CSW01_16810 0.33 +0.4
441,580 - CSW01_16810 0.33 -1.2
441,835 + CSW01_16810 0.55 +0.4
441,843 - CSW01_16810 0.56 -0.1
441,882 + CSW01_16810 0.59 -0.8
441,901 - CSW01_16810 0.60 -0.2
441,935 + CSW01_16810 0.63 -0.8
441,943 - CSW01_16810 0.64 +0.2
441,994 + CSW01_16810 0.68 +0.8
442,006 + CSW01_16810 0.69 -1.2
442,007 - CSW01_16810 0.69 -0.0
442,045 + CSW01_16810 0.73 +0.0
442,063 - CSW01_16810 0.74 -0.2
442,072 + CSW01_16810 0.75 -0.9
442,129 + CSW01_16810 0.80 +0.5
442,257 - +0.2
442,276 - +0.5
442,434 + -0.1
442,551 + CSW01_16815 0.18 -1.0
442,595 + CSW01_16815 0.25 -1.3
442,595 + CSW01_16815 0.25 -1.5
442,602 + CSW01_16815 0.26 -2.8
442,922 + CSW01_16815 0.73 +0.2
442,922 + CSW01_16815 0.73 -0.0
442,922 + CSW01_16815 0.73 -0.3
442,922 + CSW01_16815 0.73 +0.9
442,930 - CSW01_16815 0.74 +0.9
442,930 - CSW01_16815 0.74 +0.2
442,930 - CSW01_16815 0.74 -0.8
442,930 - CSW01_16815 0.74 -1.7
443,001 + CSW01_16815 0.84 +0.3
443,001 + CSW01_16815 0.84 -0.5
443,001 + CSW01_16815 0.84 -1.3
443,411 + -0.5
443,514 + -0.3
443,544 - CSW01_16820 0.12 -0.6
443,607 + CSW01_16820 0.15 +0.2
443,618 - CSW01_16820 0.16 -0.5
443,656 + CSW01_16820 0.18 +0.9
443,702 + CSW01_16820 0.21 -1.7
443,722 - CSW01_16820 0.22 +0.2
443,793 + CSW01_16820 0.26 +0.5
443,839 + CSW01_16820 0.29 -0.4
443,839 + CSW01_16820 0.29 -0.8
443,839 + CSW01_16820 0.29 +1.4
443,839 + CSW01_16820 0.29 +0.8
443,839 + CSW01_16820 0.29 -1.3
443,839 + CSW01_16820 0.29 -0.2
443,847 - CSW01_16820 0.29 +0.1
443,847 - CSW01_16820 0.29 -0.5
443,847 - CSW01_16820 0.29 -1.0
443,847 - CSW01_16820 0.29 -0.5
443,872 - CSW01_16820 0.30 +1.2
444,000 + CSW01_16820 0.38 +0.2

Or see this region's nucleotide sequence