Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16710

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16695 and CSW01_16700 are separated by 14 nucleotidesCSW01_16700 and CSW01_16705 overlap by 59 nucleotidesCSW01_16705 and CSW01_16710 are separated by 135 nucleotidesCSW01_16710 and CSW01_16715 are separated by 43 nucleotidesCSW01_16715 and CSW01_16720 are separated by 63 nucleotidesCSW01_16720 and CSW01_16725 are separated by 174 nucleotides CSW01_16695: CSW01_16695 - alpha/beta hydrolase, at 424,589 to 425,506 _16695 CSW01_16700: CSW01_16700 - hypothetical protein, at 425,521 to 425,721 _16700 CSW01_16705: CSW01_16705 - hypothetical protein, at 425,663 to 426,052 _16705 CSW01_16710: CSW01_16710 - acetyltransferase, at 426,188 to 426,472 _16710 CSW01_16715: CSW01_16715 - IS200/IS605 family transposase, at 426,516 to 426,953 _16715 CSW01_16720: CSW01_16720 - GNAT family N-acetyltransferase, at 427,017 to 427,235 _16720 CSW01_16725: CSW01_16725 - DUF3800 domain-containing protein, at 427,410 to 428,282 _16725 Position (kb) 426 427Strain fitness (log2 ratio) -1 0 1 2 3at 425.227 kb on + strand, within CSW01_16695at 425.330 kb on + strand, within CSW01_16695at 425.338 kb on - strand, within CSW01_16695at 425.340 kb on - strand, within CSW01_16695at 425.340 kb on - strand, within CSW01_16695at 425.362 kb on + strand, within CSW01_16695at 425.362 kb on + strand, within CSW01_16695at 425.396 kb on - strand, within CSW01_16695at 425.642 kb on - strand, within CSW01_16700at 425.969 kb on + strand, within CSW01_16705at 425.974 kb on + strand, within CSW01_16705at 425.986 kb on + strand, within CSW01_16705at 426.010 kb on - strand, within CSW01_16705at 426.181 kb on - strandat 427.232 kb on - strandat 427.250 kb on - strandat 427.250 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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425,227 + CSW01_16695 0.69 +2.8
425,330 + CSW01_16695 0.81 +0.1
425,338 - CSW01_16695 0.82 -0.3
425,340 - CSW01_16695 0.82 +1.4
425,340 - CSW01_16695 0.82 -0.7
425,362 + CSW01_16695 0.84 +0.1
425,362 + CSW01_16695 0.84 +0.8
425,396 - CSW01_16695 0.88 -1.6
425,642 - CSW01_16700 0.60 +0.8
425,969 + CSW01_16705 0.78 +1.8
425,974 + CSW01_16705 0.80 -1.7
425,986 + CSW01_16705 0.83 -0.4
426,010 - CSW01_16705 0.89 +0.1
426,181 - +0.1
427,232 - -0.1
427,250 - +0.8
427,250 - -0.0

Or see this region's nucleotide sequence