Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16660

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16650 and CSW01_16655 are separated by 56 nucleotidesCSW01_16655 and CSW01_16660 are separated by 151 nucleotidesCSW01_16660 and CSW01_16665 are separated by 140 nucleotidesCSW01_16665 and CSW01_16670 are separated by 222 nucleotides CSW01_16650: CSW01_16650 - hypothetical protein, at 420,804 to 420,908 _16650 CSW01_16655: CSW01_16655 - hypothetical protein, at 420,965 to 421,633 _16655 CSW01_16660: CSW01_16660 - hypothetical protein, at 421,785 to 422,072 _16660 CSW01_16665: CSW01_16665 - nucleotide pyrophosphohydrolase, at 422,213 to 422,584 _16665 CSW01_16670: CSW01_16670 - DUF1778 domain-containing protein, at 422,807 to 423,076 _16670 Position (kb) 421 422 423Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 420.933 kb on + strandat 421.039 kb on + strand, within CSW01_16655at 421.092 kb on + strand, within CSW01_16655at 421.125 kb on + strand, within CSW01_16655at 421.172 kb on + strand, within CSW01_16655at 421.532 kb on - strand, within CSW01_16655at 421.538 kb on + strand, within CSW01_16655at 421.656 kb on - strandat 421.775 kb on + strandat 421.783 kb on - strandat 421.783 kb on - strandat 421.898 kb on - strand, within CSW01_16660at 421.935 kb on + strand, within CSW01_16660at 421.968 kb on + strand, within CSW01_16660at 421.994 kb on + strand, within CSW01_16660at 421.994 kb on + strand, within CSW01_16660at 421.997 kb on - strand, within CSW01_16660at 422.025 kb on - strand, within CSW01_16660at 422.131 kb on + strandat 422.131 kb on + strandat 422.160 kb on - strandat 422.167 kb on - strandat 422.183 kb on - strandat 422.185 kb on - strandat 422.241 kb on - strandat 422.333 kb on - strand, within CSW01_16665at 422.370 kb on - strand, within CSW01_16665at 422.390 kb on + strand, within CSW01_16665at 422.411 kb on - strand, within CSW01_16665at 422.580 kb on - strandat 422.597 kb on - strandat 422.599 kb on - strandat 422.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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420,933 + -1.0
421,039 + CSW01_16655 0.11 +0.9
421,092 + CSW01_16655 0.19 -0.4
421,125 + CSW01_16655 0.24 -0.8
421,172 + CSW01_16655 0.31 -0.4
421,532 - CSW01_16655 0.85 +0.7
421,538 + CSW01_16655 0.86 -0.2
421,656 - -0.5
421,775 + -0.5
421,783 - +0.7
421,783 - +0.3
421,898 - CSW01_16660 0.39 -0.2
421,935 + CSW01_16660 0.52 -0.7
421,968 + CSW01_16660 0.64 -0.0
421,994 + CSW01_16660 0.73 -0.4
421,994 + CSW01_16660 0.73 -3.0
421,997 - CSW01_16660 0.74 -0.1
422,025 - CSW01_16660 0.83 -0.3
422,131 + +0.9
422,131 + +2.3
422,160 - -0.6
422,167 - -0.9
422,183 - -2.8
422,185 - +0.1
422,241 - +0.6
422,333 - CSW01_16665 0.32 -0.7
422,370 - CSW01_16665 0.42 +0.0
422,390 + CSW01_16665 0.48 +0.6
422,411 - CSW01_16665 0.53 +0.2
422,580 - +0.8
422,597 - +0.0
422,599 - -0.5
422,599 - -0.2

Or see this region's nucleotide sequence