Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16480 and CSW01_16485 are separated by 146 nucleotides CSW01_16485 and CSW01_16490 are separated by 142 nucleotides CSW01_16490 and CSW01_16495 are separated by 813 nucleotides
CSW01_16480: CSW01_16480 - DUF2806 domain-containing protein, at 406,720 to 407,577
_16480
CSW01_16485: CSW01_16485 - hypothetical protein, at 407,724 to 408,284
_16485
CSW01_16490: CSW01_16490 - hypothetical protein, at 408,427 to 408,774
_16490
CSW01_16495: CSW01_16495 - hypothetical protein, at 409,588 to 409,857
_16495
Position (kb) 408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 407.492 kb on + strand at 407.549 kb on + strand at 407.556 kb on - strand at 407.557 kb on - strand at 407.557 kb on - strand at 407.592 kb on - strand at 407.606 kb on - strand at 407.636 kb on + strand at 407.644 kb on - strand at 407.649 kb on + strand at 407.649 kb on + strand at 407.649 kb on + strand at 407.649 kb on + strand at 407.649 kb on + strand at 407.657 kb on - strand at 407.679 kb on + strand at 407.679 kb on + strand at 407.689 kb on + strand at 407.689 kb on + strand at 407.697 kb on - strand at 407.702 kb on - strand at 407.702 kb on - strand at 407.702 kb on - strand at 407.712 kb on + strand at 407.720 kb on - strand at 407.757 kb on - strand at 407.767 kb on - strand at 407.769 kb on + strand at 407.769 kb on + strand at 407.769 kb on + strand at 407.769 kb on + strand at 407.777 kb on - strand at 407.777 kb on - strand at 407.777 kb on - strand at 407.777 kb on - strand at 407.777 kb on - strand at 407.777 kb on - strand at 407.777 kb on - strand at 407.777 kb on - strand at 407.812 kb on + strand, within CSW01_16485 at 407.817 kb on + strand, within CSW01_16485 at 407.822 kb on + strand, within CSW01_16485 at 407.822 kb on + strand, within CSW01_16485 at 407.825 kb on - strand, within CSW01_16485 at 407.825 kb on - strand, within CSW01_16485 at 407.827 kb on + strand, within CSW01_16485 at 407.827 kb on + strand, within CSW01_16485 at 407.830 kb on - strand, within CSW01_16485 at 407.830 kb on - strand, within CSW01_16485 at 407.830 kb on - strand, within CSW01_16485 at 407.830 kb on - strand, within CSW01_16485 at 407.834 kb on + strand, within CSW01_16485 at 407.836 kb on + strand, within CSW01_16485 at 407.836 kb on - strand, within CSW01_16485 at 407.837 kb on - strand, within CSW01_16485 at 407.841 kb on + strand, within CSW01_16485 at 407.841 kb on + strand, within CSW01_16485 at 407.844 kb on - strand, within CSW01_16485 at 407.848 kb on + strand, within CSW01_16485 at 407.849 kb on - strand, within CSW01_16485 at 407.856 kb on - strand, within CSW01_16485 at 407.867 kb on + strand, within CSW01_16485 at 407.867 kb on + strand, within CSW01_16485 at 407.867 kb on + strand, within CSW01_16485 at 407.867 kb on + strand, within CSW01_16485 at 407.867 kb on + strand, within CSW01_16485 at 407.867 kb on + strand, within CSW01_16485 at 407.875 kb on - strand, within CSW01_16485 at 407.875 kb on - strand, within CSW01_16485 at 407.875 kb on - strand, within CSW01_16485 at 407.875 kb on - strand, within CSW01_16485 at 407.875 kb on - strand, within CSW01_16485 at 407.875 kb on - strand, within CSW01_16485 at 407.875 kb on - strand, within CSW01_16485 at 407.875 kb on - strand, within CSW01_16485 at 407.885 kb on - strand, within CSW01_16485 at 407.982 kb on + strand, within CSW01_16485 at 407.982 kb on + strand, within CSW01_16485 at 407.990 kb on - strand, within CSW01_16485 at 407.995 kb on - strand, within CSW01_16485 at 408.015 kb on + strand, within CSW01_16485 at 408.036 kb on - strand, within CSW01_16485 at 408.044 kb on + strand, within CSW01_16485 at 408.096 kb on + strand, within CSW01_16485 at 408.133 kb on + strand, within CSW01_16485 at 408.133 kb on + strand, within CSW01_16485 at 408.255 kb on + strand at 408.255 kb on + strand at 408.263 kb on - strand at 408.263 kb on - strand at 408.274 kb on + strand at 408.396 kb on - strand at 408.396 kb on - strand at 408.396 kb on - strand at 409.083 kb on - strand at 409.103 kb on - strand at 409.103 kb on - strand at 409.133 kb on - strand at 409.217 kb on + strand at 409.262 kb on + strand at 409.316 kb on - strand at 409.552 kb on - strand at 409.668 kb on + strand, within CSW01_16495 at 409.668 kb on + strand, within CSW01_16495 at 409.668 kb on + strand, within CSW01_16495 at 409.676 kb on - strand, within CSW01_16495 at 409.703 kb on + strand, within CSW01_16495 at 409.703 kb on + strand, within CSW01_16495 at 409.711 kb on - strand, within CSW01_16495 at 409.721 kb on - strand, within CSW01_16495
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A remove 407,492 + +0.1 407,549 + +1.7 407,556 - +0.2 407,557 - +0.7 407,557 - -1.1 407,592 - +0.1 407,606 - +0.3 407,636 + +2.1 407,644 - +0.2 407,649 + -0.3 407,649 + +0.4 407,649 + +0.4 407,649 + -0.8 407,649 + -0.6 407,657 - -0.2 407,679 + -0.6 407,679 + -0.2 407,689 + +0.2 407,689 + +0.0 407,697 - -0.1 407,702 - +0.7 407,702 - +1.2 407,702 - +0.0 407,712 + -0.2 407,720 - -0.5 407,757 - +0.9 407,767 - +0.7 407,769 + -0.8 407,769 + -0.2 407,769 + -0.0 407,769 + +0.4 407,777 - +0.7 407,777 - -0.5 407,777 - -0.7 407,777 - -1.0 407,777 - +0.2 407,777 - -0.1 407,777 - -1.7 407,777 - +0.1 407,812 + CSW01_16485 0.16 +0.7 407,817 + CSW01_16485 0.17 -0.2 407,822 + CSW01_16485 0.17 +3.6 407,822 + CSW01_16485 0.17 -1.0 407,825 - CSW01_16485 0.18 -0.3 407,825 - CSW01_16485 0.18 -0.8 407,827 + CSW01_16485 0.18 +1.3 407,827 + CSW01_16485 0.18 +0.3 407,830 - CSW01_16485 0.19 +0.6 407,830 - CSW01_16485 0.19 +2.1 407,830 - CSW01_16485 0.19 -2.0 407,830 - CSW01_16485 0.19 +0.5 407,834 + CSW01_16485 0.20 +0.3 407,836 + CSW01_16485 0.20 -0.1 407,836 - CSW01_16485 0.20 -0.6 407,837 - CSW01_16485 0.20 -0.1 407,841 + CSW01_16485 0.21 -0.2 407,841 + CSW01_16485 0.21 +0.9 407,844 - CSW01_16485 0.21 +0.6 407,848 + CSW01_16485 0.22 +0.8 407,849 - CSW01_16485 0.22 +0.1 407,856 - CSW01_16485 0.24 -1.7 407,867 + CSW01_16485 0.25 -3.0 407,867 + CSW01_16485 0.25 +0.3 407,867 + CSW01_16485 0.25 -0.0 407,867 + CSW01_16485 0.25 +0.1 407,867 + CSW01_16485 0.25 -0.8 407,867 + CSW01_16485 0.25 -0.1 407,875 - CSW01_16485 0.27 -0.8 407,875 - CSW01_16485 0.27 +0.3 407,875 - CSW01_16485 0.27 -0.2 407,875 - CSW01_16485 0.27 +0.5 407,875 - CSW01_16485 0.27 +0.4 407,875 - CSW01_16485 0.27 +0.2 407,875 - CSW01_16485 0.27 -0.2 407,875 - CSW01_16485 0.27 -1.2 407,885 - CSW01_16485 0.29 -0.1 407,982 + CSW01_16485 0.46 +1.6 407,982 + CSW01_16485 0.46 -0.0 407,990 - CSW01_16485 0.47 +1.1 407,995 - CSW01_16485 0.48 +0.5 408,015 + CSW01_16485 0.52 -0.5 408,036 - CSW01_16485 0.56 -0.7 408,044 + CSW01_16485 0.57 +0.1 408,096 + CSW01_16485 0.66 -0.3 408,133 + CSW01_16485 0.73 +0.6 408,133 + CSW01_16485 0.73 +0.0 408,255 + +0.7 408,255 + -0.6 408,263 - -0.2 408,263 - -0.0 408,274 + +0.3 408,396 - -0.7 408,396 - +0.1 408,396 - +0.7 409,083 - +0.3 409,103 - +1.7 409,103 - -0.3 409,133 - -0.6 409,217 + +1.0 409,262 + +0.1 409,316 - +0.3 409,552 - -0.2 409,668 + CSW01_16495 0.30 -0.2 409,668 + CSW01_16495 0.30 +0.9 409,668 + CSW01_16495 0.30 -0.1 409,676 - CSW01_16495 0.33 +1.0 409,703 + CSW01_16495 0.43 -2.0 409,703 + CSW01_16495 0.43 +1.0 409,711 - CSW01_16495 0.46 +0.2 409,721 - CSW01_16495 0.49 -1.3
Or see this region's nucleotide sequence