Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15005

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14990 and CSW01_14995 are separated by 67 nucleotidesCSW01_14995 and CSW01_15000 are separated by 43 nucleotidesCSW01_15000 and CSW01_15005 overlap by 26 nucleotidesCSW01_15005 and CSW01_15010 are separated by 148 nucleotides CSW01_14990: CSW01_14990 - hypothetical protein, at 218,874 to 219,752 _14990 CSW01_14995: CSW01_14995 - IS200/IS605 family transposase IS1004, at 219,820 to 220,257 _14995 CSW01_15000: CSW01_15000 - rfbP protein, at 220,301 to 220,414 _15000 CSW01_15005: CSW01_15005 - HNH endonuclease, at 220,389 to 220,613 _15005 CSW01_15010: CSW01_15010 - ATP-dependent RNA helicase RhlE, at 220,762 to 222,117 _15010 Position (kb) 220 221Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 219.396 kb on + strand, within CSW01_14990at 219.396 kb on + strand, within CSW01_14990at 219.396 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.404 kb on + strand, within CSW01_14990at 219.404 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.460 kb on - strand, within CSW01_14990at 219.519 kb on + strand, within CSW01_14990at 219.536 kb on - strand, within CSW01_14990at 219.536 kb on - strand, within CSW01_14990at 219.538 kb on + strand, within CSW01_14990at 219.538 kb on + strand, within CSW01_14990at 219.538 kb on - strand, within CSW01_14990at 219.546 kb on - strand, within CSW01_14990at 219.546 kb on - strand, within CSW01_14990at 219.548 kb on + strand, within CSW01_14990at 219.548 kb on + strand, within CSW01_14990at 219.548 kb on + strand, within CSW01_14990at 219.548 kb on + strand, within CSW01_14990at 219.548 kb on + strand, within CSW01_14990at 219.548 kb on + strand, within CSW01_14990at 219.548 kb on + strand, within CSW01_14990at 219.551 kb on - strand, within CSW01_14990at 219.554 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.721 kb on - strandat 220.388 kb on + strand, within CSW01_15000at 220.408 kb on + strandat 220.421 kb on + strand, within CSW01_15005at 220.443 kb on + strand, within CSW01_15005at 220.560 kb on + strand, within CSW01_15005at 220.626 kb on + strandat 220.725 kb on + strandat 220.891 kb on + strandat 220.899 kb on - strand, within CSW01_15010at 221.098 kb on + strand, within CSW01_15010at 221.121 kb on + strand, within CSW01_15010at 221.246 kb on - strand, within CSW01_15010at 221.262 kb on + strand, within CSW01_15010at 221.320 kb on - strand, within CSW01_15010at 221.390 kb on + strand, within CSW01_15010at 221.460 kb on + strand, within CSW01_15010at 221.460 kb on + strand, within CSW01_15010at 221.460 kb on + strand, within CSW01_15010at 221.460 kb on + strand, within CSW01_15010at 221.466 kb on - strand, within CSW01_15010at 221.468 kb on - strand, within CSW01_15010at 221.468 kb on - strand, within CSW01_15010at 221.492 kb on - strand, within CSW01_15010

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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219,396 + CSW01_14990 0.59 -1.0
219,396 + CSW01_14990 0.59 +0.1
219,396 + CSW01_14990 0.59 +0.5
219,397 + CSW01_14990 0.59 +0.2
219,397 + CSW01_14990 0.59 -0.4
219,397 + CSW01_14990 0.59 +0.6
219,397 + CSW01_14990 0.59 +0.6
219,397 + CSW01_14990 0.59 +0.3
219,397 + CSW01_14990 0.59 -1.0
219,397 + CSW01_14990 0.59 -0.2
219,397 + CSW01_14990 0.59 -1.3
219,397 + CSW01_14990 0.59 +0.4
219,397 + CSW01_14990 0.59 -0.4
219,397 + CSW01_14990 0.59 +0.4
219,397 + CSW01_14990 0.59 -0.1
219,397 + CSW01_14990 0.59 -1.7
219,397 + CSW01_14990 0.59 -0.1
219,397 + CSW01_14990 0.59 +1.6
219,397 + CSW01_14990 0.59 +1.7
219,397 + CSW01_14990 0.59 +1.1
219,397 + CSW01_14990 0.59 -1.6
219,404 + CSW01_14990 0.60 +0.0
219,404 - CSW01_14990 0.60 +0.1
219,405 - CSW01_14990 0.60 +0.7
219,405 - CSW01_14990 0.60 +0.2
219,405 - CSW01_14990 0.60 +0.2
219,405 - CSW01_14990 0.60 -0.0
219,405 - CSW01_14990 0.60 -0.3
219,405 - CSW01_14990 0.60 -0.6
219,405 - CSW01_14990 0.60 +1.1
219,405 - CSW01_14990 0.60 +0.2
219,405 - CSW01_14990 0.60 -0.7
219,405 - CSW01_14990 0.60 -1.4
219,460 - CSW01_14990 0.67 +0.5
219,519 + CSW01_14990 0.73 -1.7
219,536 - CSW01_14990 0.75 -0.6
219,536 - CSW01_14990 0.75 +0.3
219,538 + CSW01_14990 0.76 +0.2
219,538 + CSW01_14990 0.76 +1.5
219,538 - CSW01_14990 0.76 +0.5
219,546 - CSW01_14990 0.76 -0.0
219,546 - CSW01_14990 0.76 +0.7
219,548 + CSW01_14990 0.77 -0.1
219,548 + CSW01_14990 0.77 -1.1
219,548 + CSW01_14990 0.77 -0.6
219,548 + CSW01_14990 0.77 -1.9
219,548 + CSW01_14990 0.77 -0.7
219,548 + CSW01_14990 0.77 -0.9
219,548 + CSW01_14990 0.77 -0.2
219,551 - CSW01_14990 0.77 -0.5
219,554 - CSW01_14990 0.77 +1.0
219,556 - CSW01_14990 0.78 -0.5
219,556 - CSW01_14990 0.78 +0.2
219,556 - CSW01_14990 0.78 +1.1
219,556 - CSW01_14990 0.78 -0.4
219,556 - CSW01_14990 0.78 +0.5
219,556 - CSW01_14990 0.78 -0.8
219,556 - CSW01_14990 0.78 -0.1
219,556 - CSW01_14990 0.78 +0.7
219,556 - CSW01_14990 0.78 +1.3
219,556 - CSW01_14990 0.78 -0.3
219,556 - CSW01_14990 0.78 +0.5
219,556 - CSW01_14990 0.78 -0.4
219,556 - CSW01_14990 0.78 +2.0
219,556 - CSW01_14990 0.78 -0.1
219,556 - CSW01_14990 0.78 -3.1
219,556 - CSW01_14990 0.78 +0.3
219,556 - CSW01_14990 0.78 -1.1
219,556 - CSW01_14990 0.78 +0.4
219,721 - -1.1
220,388 + CSW01_15000 0.76 -0.2
220,408 + +0.6
220,421 + CSW01_15005 0.14 -0.1
220,443 + CSW01_15005 0.24 -0.9
220,560 + CSW01_15005 0.76 +0.1
220,626 + +0.3
220,725 + +0.4
220,891 + -0.1
220,899 - CSW01_15010 0.10 +0.2
221,098 + CSW01_15010 0.25 +0.5
221,121 + CSW01_15010 0.26 +0.9
221,246 - CSW01_15010 0.36 +0.8
221,262 + CSW01_15010 0.37 -0.4
221,320 - CSW01_15010 0.41 -3.5
221,390 + CSW01_15010 0.46 +1.1
221,460 + CSW01_15010 0.51 -0.8
221,460 + CSW01_15010 0.51 -0.4
221,460 + CSW01_15010 0.51 -0.4
221,460 + CSW01_15010 0.51 -0.4
221,466 - CSW01_15010 0.52 +1.0
221,468 - CSW01_15010 0.52 +1.6
221,468 - CSW01_15010 0.52 +0.5
221,492 - CSW01_15010 0.54 +0.4

Or see this region's nucleotide sequence