Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14765

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14755 and CSW01_14760 are separated by 74 nucleotidesCSW01_14760 and CSW01_14765 overlap by 1 nucleotidesCSW01_14765 and CSW01_14770 overlap by 41 nucleotidesCSW01_14770 and CSW01_14775 overlap by 4 nucleotides CSW01_14755: CSW01_14755 - oxidoreductase, at 168,619 to 169,971 _14755 CSW01_14760: CSW01_14760 - Na+/H+ antiporter subunit G, at 170,046 to 170,369 _14760 CSW01_14765: CSW01_14765 - cation:proton antiporter, at 170,369 to 170,680 _14765 CSW01_14770: CSW01_14770 - sodium:proton antiporter, at 170,640 to 171,116 _14770 CSW01_14775: CSW01_14775 - Na+/H+ antiporter subunit D, at 171,113 to 172,609 _14775 Position (kb) 170 171Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 169.386 kb on + strand, within CSW01_14755at 169.386 kb on + strand, within CSW01_14755at 169.386 kb on + strand, within CSW01_14755at 169.394 kb on - strand, within CSW01_14755at 169.394 kb on - strand, within CSW01_14755at 169.394 kb on - strand, within CSW01_14755at 169.404 kb on - strand, within CSW01_14755at 169.411 kb on - strand, within CSW01_14755at 169.479 kb on - strand, within CSW01_14755at 169.534 kb on - strand, within CSW01_14755at 169.572 kb on - strand, within CSW01_14755at 169.843 kb on + strandat 169.931 kb on + strandat 169.974 kb on - strandat 169.984 kb on + strandat 169.992 kb on - strandat 169.992 kb on - strandat 169.994 kb on + strandat 170.017 kb on - strandat 170.116 kb on + strand, within CSW01_14760at 170.116 kb on + strand, within CSW01_14760at 170.116 kb on + strand, within CSW01_14760at 170.165 kb on + strand, within CSW01_14760at 170.170 kb on + strand, within CSW01_14760at 170.178 kb on - strand, within CSW01_14760at 170.203 kb on + strand, within CSW01_14760at 170.203 kb on + strand, within CSW01_14760at 170.221 kb on + strand, within CSW01_14760at 170.226 kb on + strand, within CSW01_14760at 170.435 kb on + strand, within CSW01_14765at 170.435 kb on + strand, within CSW01_14765at 170.435 kb on + strand, within CSW01_14765at 170.441 kb on + strand, within CSW01_14765at 170.443 kb on - strand, within CSW01_14765at 170.443 kb on - strand, within CSW01_14765at 170.449 kb on - strand, within CSW01_14765at 170.558 kb on + strand, within CSW01_14765at 170.558 kb on + strand, within CSW01_14765at 170.558 kb on + strand, within CSW01_14765at 170.558 kb on + strand, within CSW01_14765at 170.566 kb on - strand, within CSW01_14765at 170.566 kb on - strand, within CSW01_14765at 170.566 kb on - strand, within CSW01_14765at 170.566 kb on - strand, within CSW01_14765at 170.581 kb on - strand, within CSW01_14765at 170.640 kb on - strandat 170.713 kb on + strand, within CSW01_14770at 170.713 kb on + strand, within CSW01_14770at 170.723 kb on - strand, within CSW01_14770at 170.807 kb on - strand, within CSW01_14770at 170.859 kb on - strand, within CSW01_14770at 170.870 kb on + strand, within CSW01_14770at 170.898 kb on - strand, within CSW01_14770at 171.069 kb on - strandat 171.105 kb on + strandat 171.125 kb on + strandat 171.187 kb on - strandat 171.222 kb on + strandat 171.232 kb on - strandat 171.232 kb on - strandat 171.268 kb on + strand, within CSW01_14775at 171.372 kb on - strand, within CSW01_14775at 171.398 kb on - strand, within CSW01_14775at 171.454 kb on + strand, within CSW01_14775at 171.481 kb on - strand, within CSW01_14775at 171.501 kb on - strand, within CSW01_14775at 171.536 kb on - strand, within CSW01_14775at 171.644 kb on + strand, within CSW01_14775

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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169,386 + CSW01_14755 0.57 +0.4
169,386 + CSW01_14755 0.57 +1.1
169,386 + CSW01_14755 0.57 -2.8
169,394 - CSW01_14755 0.57 +0.2
169,394 - CSW01_14755 0.57 -0.4
169,394 - CSW01_14755 0.57 -0.1
169,404 - CSW01_14755 0.58 -0.4
169,411 - CSW01_14755 0.59 -0.4
169,479 - CSW01_14755 0.64 -1.1
169,534 - CSW01_14755 0.68 +0.9
169,572 - CSW01_14755 0.70 -0.4
169,843 + -0.4
169,931 + -3.3
169,974 - -0.5
169,984 + -0.0
169,992 - +0.3
169,992 - +0.1
169,994 + +0.2
170,017 - +0.7
170,116 + CSW01_14760 0.22 +0.2
170,116 + CSW01_14760 0.22 +0.4
170,116 + CSW01_14760 0.22 -0.5
170,165 + CSW01_14760 0.37 -2.2
170,170 + CSW01_14760 0.38 +1.4
170,178 - CSW01_14760 0.41 +0.4
170,203 + CSW01_14760 0.48 +0.4
170,203 + CSW01_14760 0.48 -0.6
170,221 + CSW01_14760 0.54 +0.6
170,226 + CSW01_14760 0.56 -0.6
170,435 + CSW01_14765 0.21 -0.8
170,435 + CSW01_14765 0.21 -0.5
170,435 + CSW01_14765 0.21 +0.4
170,441 + CSW01_14765 0.23 +0.2
170,443 - CSW01_14765 0.24 +0.0
170,443 - CSW01_14765 0.24 -1.8
170,449 - CSW01_14765 0.26 +0.2
170,558 + CSW01_14765 0.61 -0.8
170,558 + CSW01_14765 0.61 +0.4
170,558 + CSW01_14765 0.61 -1.2
170,558 + CSW01_14765 0.61 -0.8
170,566 - CSW01_14765 0.63 -0.3
170,566 - CSW01_14765 0.63 +0.2
170,566 - CSW01_14765 0.63 -1.6
170,566 - CSW01_14765 0.63 +0.1
170,581 - CSW01_14765 0.68 -1.2
170,640 - +1.9
170,713 + CSW01_14770 0.15 -2.7
170,713 + CSW01_14770 0.15 -1.2
170,723 - CSW01_14770 0.17 +1.2
170,807 - CSW01_14770 0.35 +0.4
170,859 - CSW01_14770 0.46 +0.3
170,870 + CSW01_14770 0.48 +0.2
170,898 - CSW01_14770 0.54 -0.2
171,069 - +0.2
171,105 + -2.9
171,125 + +0.7
171,187 - +0.0
171,222 + -0.1
171,232 - -2.5
171,232 - -0.4
171,268 + CSW01_14775 0.10 -0.1
171,372 - CSW01_14775 0.17 +0.6
171,398 - CSW01_14775 0.19 -0.5
171,454 + CSW01_14775 0.23 -0.5
171,481 - CSW01_14775 0.25 -0.5
171,501 - CSW01_14775 0.26 +0.3
171,536 - CSW01_14775 0.28 -2.8
171,644 + CSW01_14775 0.35 -1.3

Or see this region's nucleotide sequence