Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14670

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14665 and CSW01_14670 are separated by 10 nucleotidesCSW01_14670 and CSW01_14675 are separated by 125 nucleotidesCSW01_14675 and CSW01_14680 are separated by 45 nucleotidesCSW01_14680 and CSW01_14685 overlap by 4 nucleotides CSW01_14665: CSW01_14665 - ribokinase, at 145,713 to 146,633 _14665 CSW01_14670: CSW01_14670 - transcriptional repressor PurR, at 146,644 to 147,648 _14670 CSW01_14675: CSW01_14675 - nicotinamide mononucleotide transporter, at 147,774 to 148,340 _14675 CSW01_14680: CSW01_14680 - aminotransferase, at 148,386 to 148,508 _14680 CSW01_14685: CSW01_14685 - uridine phosphorylase, at 148,505 to 149,236 _14685 Position (kb) 146 147 148Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 145.658 kb on + strandat 145.666 kb on - strandat 145.699 kb on - strandat 145.701 kb on + strandat 145.711 kb on - strandat 145.711 kb on - strandat 145.747 kb on - strandat 145.752 kb on - strandat 145.930 kb on + strand, within CSW01_14665at 145.960 kb on + strand, within CSW01_14665at 146.019 kb on + strand, within CSW01_14665at 146.019 kb on + strand, within CSW01_14665at 146.027 kb on - strand, within CSW01_14665at 146.041 kb on + strand, within CSW01_14665at 146.057 kb on - strand, within CSW01_14665at 146.134 kb on - strand, within CSW01_14665at 146.220 kb on - strand, within CSW01_14665at 146.242 kb on + strand, within CSW01_14665at 146.247 kb on + strand, within CSW01_14665at 146.248 kb on - strand, within CSW01_14665at 146.269 kb on - strand, within CSW01_14665at 146.334 kb on + strand, within CSW01_14665at 146.342 kb on + strand, within CSW01_14665at 146.342 kb on + strand, within CSW01_14665at 146.342 kb on + strand, within CSW01_14665at 146.342 kb on + strand, within CSW01_14665at 146.342 kb on + strand, within CSW01_14665at 146.349 kb on + strand, within CSW01_14665at 146.350 kb on - strand, within CSW01_14665at 146.365 kb on + strand, within CSW01_14665at 146.393 kb on - strand, within CSW01_14665at 146.394 kb on - strand, within CSW01_14665at 146.463 kb on + strand, within CSW01_14665at 146.479 kb on - strand, within CSW01_14665at 146.487 kb on - strand, within CSW01_14665at 146.487 kb on - strand, within CSW01_14665at 146.543 kb on - strandat 146.594 kb on - strandat 146.881 kb on + strand, within CSW01_14670at 146.882 kb on + strand, within CSW01_14670at 146.890 kb on - strand, within CSW01_14670at 146.908 kb on + strand, within CSW01_14670at 146.908 kb on + strand, within CSW01_14670at 146.908 kb on + strand, within CSW01_14670at 146.908 kb on + strand, within CSW01_14670at 146.915 kb on + strand, within CSW01_14670at 146.917 kb on - strand, within CSW01_14670at 146.917 kb on - strand, within CSW01_14670at 146.964 kb on + strand, within CSW01_14670at 146.964 kb on + strand, within CSW01_14670at 146.972 kb on - strand, within CSW01_14670at 147.040 kb on - strand, within CSW01_14670at 147.141 kb on + strand, within CSW01_14670at 147.159 kb on + strand, within CSW01_14670at 147.173 kb on - strand, within CSW01_14670at 147.178 kb on - strand, within CSW01_14670at 147.178 kb on - strand, within CSW01_14670at 147.220 kb on + strand, within CSW01_14670at 147.220 kb on - strand, within CSW01_14670at 147.225 kb on - strand, within CSW01_14670at 147.357 kb on + strand, within CSW01_14670at 147.474 kb on - strand, within CSW01_14670at 147.483 kb on + strand, within CSW01_14670at 147.491 kb on - strand, within CSW01_14670at 147.491 kb on - strand, within CSW01_14670at 147.491 kb on - strand, within CSW01_14670at 147.491 kb on - strand, within CSW01_14670at 147.553 kb on - strandat 147.563 kb on - strandat 147.599 kb on + strandat 147.611 kb on + strandat 147.619 kb on + strandat 147.629 kb on - strandat 147.629 kb on - strandat 147.700 kb on + strandat 147.700 kb on + strandat 147.756 kb on - strandat 147.801 kb on + strandat 147.802 kb on + strandat 147.845 kb on + strand, within CSW01_14675at 147.850 kb on + strand, within CSW01_14675at 148.125 kb on - strand, within CSW01_14675at 148.140 kb on - strand, within CSW01_14675at 148.197 kb on + strand, within CSW01_14675at 148.216 kb on - strand, within CSW01_14675at 148.218 kb on + strand, within CSW01_14675at 148.218 kb on + strand, within CSW01_14675at 148.221 kb on - strand, within CSW01_14675at 148.226 kb on - strand, within CSW01_14675at 148.236 kb on - strand, within CSW01_14675at 148.281 kb on - strand, within CSW01_14675at 148.352 kb on - strandat 148.466 kb on + strand, within CSW01_14680at 148.548 kb on + strandat 148.548 kb on + strandat 148.548 kb on + strandat 148.568 kb on - strandat 148.605 kb on + strand, within CSW01_14685at 148.605 kb on + strand, within CSW01_14685at 148.608 kb on - strand, within CSW01_14685

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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145,658 + +0.8
145,666 - -0.7
145,699 - -0.2
145,701 + +2.0
145,711 - -0.1
145,711 - -1.7
145,747 - -0.8
145,752 - +1.7
145,930 + CSW01_14665 0.24 +0.5
145,960 + CSW01_14665 0.27 -0.7
146,019 + CSW01_14665 0.33 -0.4
146,019 + CSW01_14665 0.33 -0.8
146,027 - CSW01_14665 0.34 +0.5
146,041 + CSW01_14665 0.36 -0.9
146,057 - CSW01_14665 0.37 -0.4
146,134 - CSW01_14665 0.46 +0.3
146,220 - CSW01_14665 0.55 +1.7
146,242 + CSW01_14665 0.57 -0.4
146,247 + CSW01_14665 0.58 +0.3
146,248 - CSW01_14665 0.58 +1.3
146,269 - CSW01_14665 0.60 +0.7
146,334 + CSW01_14665 0.67 +1.1
146,342 + CSW01_14665 0.68 -0.4
146,342 + CSW01_14665 0.68 +0.5
146,342 + CSW01_14665 0.68 +0.1
146,342 + CSW01_14665 0.68 -1.2
146,342 + CSW01_14665 0.68 +0.4
146,349 + CSW01_14665 0.69 -0.2
146,350 - CSW01_14665 0.69 +0.1
146,365 + CSW01_14665 0.71 +1.5
146,393 - CSW01_14665 0.74 +0.2
146,394 - CSW01_14665 0.74 -0.6
146,463 + CSW01_14665 0.81 +0.2
146,479 - CSW01_14665 0.83 -1.6
146,487 - CSW01_14665 0.84 +0.5
146,487 - CSW01_14665 0.84 -2.6
146,543 - -2.6
146,594 - -1.9
146,881 + CSW01_14670 0.24 +0.2
146,882 + CSW01_14670 0.24 +0.4
146,890 - CSW01_14670 0.24 -0.4
146,908 + CSW01_14670 0.26 +0.6
146,908 + CSW01_14670 0.26 -0.3
146,908 + CSW01_14670 0.26 -0.7
146,908 + CSW01_14670 0.26 -0.5
146,915 + CSW01_14670 0.27 +0.9
146,917 - CSW01_14670 0.27 -2.9
146,917 - CSW01_14670 0.27 +0.4
146,964 + CSW01_14670 0.32 +0.4
146,964 + CSW01_14670 0.32 +1.4
146,972 - CSW01_14670 0.33 -0.9
147,040 - CSW01_14670 0.39 -0.6
147,141 + CSW01_14670 0.49 +0.3
147,159 + CSW01_14670 0.51 -1.4
147,173 - CSW01_14670 0.53 +0.4
147,178 - CSW01_14670 0.53 +1.5
147,178 - CSW01_14670 0.53 +0.7
147,220 + CSW01_14670 0.57 +0.9
147,220 - CSW01_14670 0.57 +0.3
147,225 - CSW01_14670 0.58 +0.3
147,357 + CSW01_14670 0.71 -0.0
147,474 - CSW01_14670 0.83 -0.6
147,483 + CSW01_14670 0.83 +0.4
147,491 - CSW01_14670 0.84 +0.1
147,491 - CSW01_14670 0.84 -1.9
147,491 - CSW01_14670 0.84 +0.9
147,491 - CSW01_14670 0.84 +1.1
147,553 - +0.2
147,563 - +0.9
147,599 + +0.7
147,611 + -0.8
147,619 + +0.9
147,629 - -0.6
147,629 - +0.9
147,700 + +1.1
147,700 + +0.7
147,756 - +0.1
147,801 + +0.4
147,802 + -0.8
147,845 + CSW01_14675 0.13 +0.1
147,850 + CSW01_14675 0.13 +1.5
148,125 - CSW01_14675 0.62 +0.6
148,140 - CSW01_14675 0.65 -0.6
148,197 + CSW01_14675 0.75 +0.2
148,216 - CSW01_14675 0.78 +0.0
148,218 + CSW01_14675 0.78 -0.1
148,218 + CSW01_14675 0.78 -0.8
148,221 - CSW01_14675 0.79 -0.5
148,226 - CSW01_14675 0.80 -0.5
148,236 - CSW01_14675 0.81 -0.2
148,281 - CSW01_14675 0.89 -1.0
148,352 - +0.9
148,466 + CSW01_14680 0.65 -1.9
148,548 + +0.5
148,548 + -0.3
148,548 + +1.1
148,568 - -1.6
148,605 + CSW01_14685 0.14 -0.2
148,605 + CSW01_14685 0.14 -0.1
148,608 - CSW01_14685 0.14 -1.2

Or see this region's nucleotide sequence