Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14600 and CSW01_14605 overlap by 31 nucleotides CSW01_14605 and CSW01_14610 are separated by 9 nucleotides CSW01_14610 and CSW01_14615 are separated by 15 nucleotides
CSW01_14600: CSW01_14600 - AAA family ATPase, at 128,788 to 130,380
_14600
CSW01_14605: CSW01_14605 - type VI secretion system-associated protein TagO, at 130,350 to 131,033
_14605
CSW01_14610: CSW01_14610 - type VI secretion system protein TssA, at 131,043 to 132,452
_14610
CSW01_14615: CSW01_14615 - type VI secretion system membrane subunit TssM, at 132,468 to 136,013
_14615
Position (kb) 131
132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 130.047 kb on - strand, within CSW01_14600 at 130.074 kb on + strand, within CSW01_14600 at 130.082 kb on - strand, within CSW01_14600 at 130.082 kb on - strand, within CSW01_14600 at 130.082 kb on - strand, within CSW01_14600 at 130.083 kb on - strand, within CSW01_14600 at 130.083 kb on - strand, within CSW01_14600 at 130.108 kb on + strand, within CSW01_14600 at 130.113 kb on + strand, within CSW01_14600 at 130.113 kb on + strand, within CSW01_14600 at 130.113 kb on + strand, within CSW01_14600 at 130.116 kb on - strand, within CSW01_14600 at 130.118 kb on + strand, within CSW01_14600 at 130.281 kb on - strand at 130.342 kb on + strand at 130.350 kb on - strand at 130.365 kb on + strand at 130.433 kb on + strand, within CSW01_14605 at 130.479 kb on + strand, within CSW01_14605 at 130.503 kb on + strand, within CSW01_14605 at 130.545 kb on + strand, within CSW01_14605 at 130.571 kb on + strand, within CSW01_14605 at 130.571 kb on + strand, within CSW01_14605 at 130.571 kb on + strand, within CSW01_14605 at 130.571 kb on + strand, within CSW01_14605 at 130.579 kb on - strand, within CSW01_14605 at 130.579 kb on - strand, within CSW01_14605 at 130.579 kb on - strand, within CSW01_14605 at 130.598 kb on - strand, within CSW01_14605 at 130.628 kb on + strand, within CSW01_14605 at 130.628 kb on + strand, within CSW01_14605 at 130.660 kb on + strand, within CSW01_14605 at 130.668 kb on - strand, within CSW01_14605 at 130.719 kb on - strand, within CSW01_14605 at 131.179 kb on + strand at 131.179 kb on + strand at 131.187 kb on - strand, within CSW01_14610 at 131.187 kb on - strand, within CSW01_14610 at 131.199 kb on + strand, within CSW01_14610 at 131.212 kb on + strand, within CSW01_14610 at 131.220 kb on - strand, within CSW01_14610 at 131.234 kb on + strand, within CSW01_14610 at 131.242 kb on - strand, within CSW01_14610 at 131.361 kb on - strand, within CSW01_14610 at 131.496 kb on + strand, within CSW01_14610 at 131.544 kb on - strand, within CSW01_14610 at 131.551 kb on + strand, within CSW01_14610 at 131.551 kb on + strand, within CSW01_14610 at 131.552 kb on + strand, within CSW01_14610 at 131.559 kb on - strand, within CSW01_14610 at 131.561 kb on + strand, within CSW01_14610 at 131.562 kb on - strand, within CSW01_14610 at 131.587 kb on + strand, within CSW01_14610 at 131.587 kb on - strand, within CSW01_14610 at 131.592 kb on + strand, within CSW01_14610 at 131.592 kb on + strand, within CSW01_14610 at 131.595 kb on - strand, within CSW01_14610 at 131.595 kb on - strand, within CSW01_14610 at 131.613 kb on + strand, within CSW01_14610 at 131.621 kb on - strand, within CSW01_14610 at 131.631 kb on - strand, within CSW01_14610 at 131.644 kb on - strand, within CSW01_14610 at 131.654 kb on + strand, within CSW01_14610 at 131.662 kb on - strand, within CSW01_14610 at 131.669 kb on + strand, within CSW01_14610 at 131.671 kb on + strand, within CSW01_14610 at 131.679 kb on - strand, within CSW01_14610 at 131.706 kb on + strand, within CSW01_14610 at 131.772 kb on + strand, within CSW01_14610 at 131.782 kb on + strand, within CSW01_14610 at 131.795 kb on + strand, within CSW01_14610 at 131.798 kb on - strand, within CSW01_14610 at 131.798 kb on - strand, within CSW01_14610 at 131.800 kb on + strand, within CSW01_14610 at 131.808 kb on - strand, within CSW01_14610 at 131.873 kb on + strand, within CSW01_14610 at 131.881 kb on - strand, within CSW01_14610 at 131.881 kb on - strand, within CSW01_14610 at 131.930 kb on + strand, within CSW01_14610 at 131.930 kb on + strand, within CSW01_14610 at 131.930 kb on - strand, within CSW01_14610 at 131.930 kb on - strand, within CSW01_14610 at 131.938 kb on - strand, within CSW01_14610 at 132.004 kb on - strand, within CSW01_14610 at 132.130 kb on + strand, within CSW01_14610 at 132.140 kb on + strand, within CSW01_14610 at 132.143 kb on - strand, within CSW01_14610 at 132.174 kb on + strand, within CSW01_14610 at 132.255 kb on + strand, within CSW01_14610 at 132.255 kb on + strand, within CSW01_14610 at 132.273 kb on - strand, within CSW01_14610 at 132.307 kb on + strand, within CSW01_14610 at 132.330 kb on - strand at 132.356 kb on + strand at 132.356 kb on + strand at 132.364 kb on - strand at 132.364 kb on - strand at 132.364 kb on - strand at 132.364 kb on - strand at 132.364 kb on - strand at 132.515 kb on + strand at 132.597 kb on - strand at 132.597 kb on - strand at 132.628 kb on + strand at 132.629 kb on + strand at 132.667 kb on + strand at 132.675 kb on - strand at 132.760 kb on + strand at 132.781 kb on + strand at 132.808 kb on + strand at 132.920 kb on - strand, within CSW01_14615 at 132.920 kb on - strand, within CSW01_14615 at 133.018 kb on - strand, within CSW01_14615 at 133.058 kb on + strand, within CSW01_14615 at 133.200 kb on + strand, within CSW01_14615 at 133.200 kb on - strand, within CSW01_14615 at 133.201 kb on - strand, within CSW01_14615 at 133.201 kb on - strand, within CSW01_14615 at 133.201 kb on - strand, within CSW01_14615 at 133.201 kb on - strand, within CSW01_14615 at 133.219 kb on + strand, within CSW01_14615 at 133.219 kb on + strand, within CSW01_14615 at 133.270 kb on + strand, within CSW01_14615 at 133.270 kb on + strand, within CSW01_14615 at 133.278 kb on - strand, within CSW01_14615 at 133.288 kb on - strand, within CSW01_14615 at 133.288 kb on - strand, within CSW01_14615 at 133.303 kb on + strand, within CSW01_14615 at 133.311 kb on - strand, within CSW01_14615 at 133.311 kb on - strand, within CSW01_14615 at 133.336 kb on - strand, within CSW01_14615 at 133.347 kb on + strand, within CSW01_14615
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A remove 130,047 - CSW01_14600 0.79 +0.5 130,074 + CSW01_14600 0.81 -0.2 130,082 - CSW01_14600 0.81 -0.2 130,082 - CSW01_14600 0.81 +0.6 130,082 - CSW01_14600 0.81 -0.0 130,083 - CSW01_14600 0.81 -0.4 130,083 - CSW01_14600 0.81 +1.4 130,108 + CSW01_14600 0.83 +0.2 130,113 + CSW01_14600 0.83 +0.4 130,113 + CSW01_14600 0.83 +0.9 130,113 + CSW01_14600 0.83 +1.2 130,116 - CSW01_14600 0.83 -0.8 130,118 + CSW01_14600 0.83 +1.2 130,281 - -0.6 130,342 + +0.6 130,350 - -0.2 130,365 + +0.7 130,433 + CSW01_14605 0.12 -0.2 130,479 + CSW01_14605 0.19 -0.1 130,503 + CSW01_14605 0.22 -1.4 130,545 + CSW01_14605 0.29 +1.7 130,571 + CSW01_14605 0.32 -1.5 130,571 + CSW01_14605 0.32 -2.2 130,571 + CSW01_14605 0.32 -2.9 130,571 + CSW01_14605 0.32 +0.6 130,579 - CSW01_14605 0.33 +0.3 130,579 - CSW01_14605 0.33 +0.6 130,579 - CSW01_14605 0.33 +0.9 130,598 - CSW01_14605 0.36 +2.4 130,628 + CSW01_14605 0.41 -1.5 130,628 + CSW01_14605 0.41 +0.6 130,660 + CSW01_14605 0.45 -1.3 130,668 - CSW01_14605 0.46 +0.1 130,719 - CSW01_14605 0.54 +0.1 131,179 + +2.0 131,179 + +0.2 131,187 - CSW01_14610 0.10 -0.4 131,187 - CSW01_14610 0.10 +0.4 131,199 + CSW01_14610 0.11 -3.6 131,212 + CSW01_14610 0.12 -0.7 131,220 - CSW01_14610 0.13 +1.0 131,234 + CSW01_14610 0.14 -0.5 131,242 - CSW01_14610 0.14 -0.7 131,361 - CSW01_14610 0.23 +1.2 131,496 + CSW01_14610 0.32 +0.5 131,544 - CSW01_14610 0.36 -0.1 131,551 + CSW01_14610 0.36 -2.4 131,551 + CSW01_14610 0.36 +0.0 131,552 + CSW01_14610 0.36 +0.3 131,559 - CSW01_14610 0.37 +0.0 131,561 + CSW01_14610 0.37 +0.9 131,562 - CSW01_14610 0.37 -0.1 131,587 + CSW01_14610 0.39 -0.0 131,587 - CSW01_14610 0.39 -0.8 131,592 + CSW01_14610 0.39 -1.1 131,592 + CSW01_14610 0.39 -0.9 131,595 - CSW01_14610 0.39 +0.8 131,595 - CSW01_14610 0.39 +0.4 131,613 + CSW01_14610 0.40 +1.2 131,621 - CSW01_14610 0.41 -0.2 131,631 - CSW01_14610 0.42 +0.1 131,644 - CSW01_14610 0.43 -0.9 131,654 + CSW01_14610 0.43 -1.7 131,662 - CSW01_14610 0.44 -0.3 131,669 + CSW01_14610 0.44 -0.0 131,671 + CSW01_14610 0.45 -0.9 131,679 - CSW01_14610 0.45 -1.2 131,706 + CSW01_14610 0.47 -0.4 131,772 + CSW01_14610 0.52 -0.4 131,782 + CSW01_14610 0.52 -0.2 131,795 + CSW01_14610 0.53 +0.4 131,798 - CSW01_14610 0.54 +2.4 131,798 - CSW01_14610 0.54 +0.6 131,800 + CSW01_14610 0.54 -1.6 131,808 - CSW01_14610 0.54 +2.2 131,873 + CSW01_14610 0.59 +0.1 131,881 - CSW01_14610 0.59 -0.4 131,881 - CSW01_14610 0.59 -0.3 131,930 + CSW01_14610 0.63 +0.7 131,930 + CSW01_14610 0.63 -1.2 131,930 - CSW01_14610 0.63 -0.4 131,930 - CSW01_14610 0.63 -0.5 131,938 - CSW01_14610 0.63 -1.0 132,004 - CSW01_14610 0.68 -1.6 132,130 + CSW01_14610 0.77 -1.4 132,140 + CSW01_14610 0.78 +0.3 132,143 - CSW01_14610 0.78 -0.8 132,174 + CSW01_14610 0.80 +1.1 132,255 + CSW01_14610 0.86 +0.6 132,255 + CSW01_14610 0.86 -0.4 132,273 - CSW01_14610 0.87 -1.2 132,307 + CSW01_14610 0.90 -0.6 132,330 - -0.0 132,356 + -0.0 132,356 + -1.6 132,364 - +0.9 132,364 - -0.9 132,364 - -1.3 132,364 - -0.5 132,364 - -1.7 132,515 + -0.2 132,597 - -0.1 132,597 - +0.6 132,628 + +1.1 132,629 + -0.1 132,667 + -1.3 132,675 - -0.8 132,760 + -0.8 132,781 + -0.3 132,808 + +0.8 132,920 - CSW01_14615 0.13 +0.3 132,920 - CSW01_14615 0.13 -0.2 133,018 - CSW01_14615 0.16 +0.6 133,058 + CSW01_14615 0.17 -0.3 133,200 + CSW01_14615 0.21 +0.2 133,200 - CSW01_14615 0.21 +0.5 133,201 - CSW01_14615 0.21 +1.2 133,201 - CSW01_14615 0.21 +1.0 133,201 - CSW01_14615 0.21 -0.3 133,201 - CSW01_14615 0.21 -0.1 133,219 + CSW01_14615 0.21 -0.5 133,219 + CSW01_14615 0.21 -0.5 133,270 + CSW01_14615 0.23 +0.5 133,270 + CSW01_14615 0.23 +0.1 133,278 - CSW01_14615 0.23 +0.8 133,288 - CSW01_14615 0.23 +0.4 133,288 - CSW01_14615 0.23 +0.2 133,303 + CSW01_14615 0.24 -0.1 133,311 - CSW01_14615 0.24 +0.4 133,311 - CSW01_14615 0.24 -1.5 133,336 - CSW01_14615 0.24 +0.8 133,347 + CSW01_14615 0.25 +0.3
Or see this region's nucleotide sequence