Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14440

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14435 and CSW01_14440 are separated by 41 nucleotidesCSW01_14440 and CSW01_14445 are separated by 178 nucleotides CSW01_14435: CSW01_14435 - MFS transporter, at 93,580 to 94,791 _14435 CSW01_14440: CSW01_14440 - redox-sensitive transcriptional activator SoxR, at 94,833 to 95,279 _14440 CSW01_14445: CSW01_14445 - MFS transporter, at 95,458 to 96,660 _14445 Position (kb) 94 95 96Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.848 kb on + strand, within CSW01_14435at 93.856 kb on - strand, within CSW01_14435at 93.856 kb on - strand, within CSW01_14435at 93.856 kb on - strand, within CSW01_14435at 93.858 kb on - strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.914 kb on + strand, within CSW01_14435at 93.922 kb on - strand, within CSW01_14435at 93.922 kb on - strand, within CSW01_14435at 93.922 kb on - strand, within CSW01_14435at 93.922 kb on - strand, within CSW01_14435at 93.922 kb on - strand, within CSW01_14435at 93.929 kb on + strand, within CSW01_14435at 93.974 kb on + strand, within CSW01_14435at 93.974 kb on + strand, within CSW01_14435at 93.992 kb on - strand, within CSW01_14435at 94.101 kb on + strand, within CSW01_14435at 94.101 kb on + strand, within CSW01_14435at 94.101 kb on + strand, within CSW01_14435at 94.109 kb on - strand, within CSW01_14435at 94.168 kb on - strand, within CSW01_14435at 94.192 kb on + strand, within CSW01_14435at 94.200 kb on - strand, within CSW01_14435at 94.210 kb on - strand, within CSW01_14435at 94.210 kb on - strand, within CSW01_14435at 94.325 kb on - strand, within CSW01_14435at 94.395 kb on + strand, within CSW01_14435at 94.395 kb on + strand, within CSW01_14435at 94.436 kb on - strand, within CSW01_14435at 94.521 kb on + strand, within CSW01_14435at 94.544 kb on - strand, within CSW01_14435at 94.665 kb on + strand, within CSW01_14435at 94.764 kb on + strandat 94.764 kb on + strandat 94.766 kb on - strandat 94.772 kb on - strandat 94.772 kb on - strandat 94.772 kb on - strandat 94.819 kb on + strandat 94.821 kb on + strandat 94.923 kb on - strand, within CSW01_14440at 95.122 kb on + strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.130 kb on - strand, within CSW01_14440at 95.132 kb on + strand, within CSW01_14440at 95.155 kb on - strand, within CSW01_14440at 95.227 kb on + strand, within CSW01_14440at 95.240 kb on + strandat 95.348 kb on + strandat 95.549 kb on - strandat 95.621 kb on + strand, within CSW01_14445at 95.703 kb on + strand, within CSW01_14445at 95.711 kb on - strand, within CSW01_14445at 95.738 kb on - strand, within CSW01_14445at 95.743 kb on + strand, within CSW01_14445at 95.751 kb on - strand, within CSW01_14445at 95.784 kb on - strand, within CSW01_14445at 95.904 kb on + strand, within CSW01_14445at 95.932 kb on - strand, within CSW01_14445at 95.932 kb on - strand, within CSW01_14445at 96.017 kb on - strand, within CSW01_14445at 96.085 kb on - strand, within CSW01_14445at 96.085 kb on - strand, within CSW01_14445at 96.130 kb on + strand, within CSW01_14445at 96.130 kb on + strand, within CSW01_14445at 96.138 kb on - strand, within CSW01_14445at 96.138 kb on - strand, within CSW01_14445at 96.143 kb on - strand, within CSW01_14445at 96.145 kb on + strand, within CSW01_14445at 96.217 kb on + strand, within CSW01_14445

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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93,848 + CSW01_14435 0.22 -0.5
93,848 + CSW01_14435 0.22 +0.5
93,848 + CSW01_14435 0.22 -0.1
93,848 + CSW01_14435 0.22 -0.1
93,848 + CSW01_14435 0.22 +0.1
93,848 + CSW01_14435 0.22 +0.9
93,848 + CSW01_14435 0.22 -0.4
93,856 - CSW01_14435 0.23 -0.1
93,856 - CSW01_14435 0.23 +0.4
93,856 - CSW01_14435 0.23 -0.7
93,858 - CSW01_14435 0.23 -0.8
93,914 + CSW01_14435 0.28 +0.5
93,914 + CSW01_14435 0.28 +0.2
93,914 + CSW01_14435 0.28 -0.4
93,914 + CSW01_14435 0.28 +0.5
93,914 + CSW01_14435 0.28 +0.9
93,914 + CSW01_14435 0.28 +0.5
93,922 - CSW01_14435 0.28 -0.0
93,922 - CSW01_14435 0.28 +0.0
93,922 - CSW01_14435 0.28 +0.4
93,922 - CSW01_14435 0.28 -0.6
93,922 - CSW01_14435 0.28 +2.0
93,929 + CSW01_14435 0.29 +2.0
93,974 + CSW01_14435 0.33 +1.2
93,974 + CSW01_14435 0.33 -0.3
93,992 - CSW01_14435 0.34 -1.2
94,101 + CSW01_14435 0.43 -0.2
94,101 + CSW01_14435 0.43 -0.1
94,101 + CSW01_14435 0.43 +1.2
94,109 - CSW01_14435 0.44 -1.2
94,168 - CSW01_14435 0.49 -0.2
94,192 + CSW01_14435 0.50 -0.2
94,200 - CSW01_14435 0.51 -1.4
94,210 - CSW01_14435 0.52 +0.3
94,210 - CSW01_14435 0.52 -0.0
94,325 - CSW01_14435 0.61 +0.3
94,395 + CSW01_14435 0.67 -0.7
94,395 + CSW01_14435 0.67 +0.2
94,436 - CSW01_14435 0.71 +0.0
94,521 + CSW01_14435 0.78 +0.2
94,544 - CSW01_14435 0.80 +1.5
94,665 + CSW01_14435 0.90 +1.6
94,764 + -2.8
94,764 + -0.1
94,766 - -1.5
94,772 - +0.7
94,772 - +0.8
94,772 - -1.9
94,819 + -0.1
94,821 + +0.4
94,923 - CSW01_14440 0.20 -0.2
95,122 + CSW01_14440 0.65 -0.3
95,130 - CSW01_14440 0.66 +0.2
95,130 - CSW01_14440 0.66 +0.2
95,130 - CSW01_14440 0.66 +0.9
95,130 - CSW01_14440 0.66 +0.6
95,130 - CSW01_14440 0.66 +1.6
95,130 - CSW01_14440 0.66 +1.2
95,132 + CSW01_14440 0.67 -0.5
95,155 - CSW01_14440 0.72 -0.9
95,227 + CSW01_14440 0.88 +0.3
95,240 + -0.5
95,348 + -0.6
95,549 - +0.3
95,621 + CSW01_14445 0.14 -0.6
95,703 + CSW01_14445 0.20 +1.6
95,711 - CSW01_14445 0.21 +1.6
95,738 - CSW01_14445 0.23 -1.0
95,743 + CSW01_14445 0.24 -1.2
95,751 - CSW01_14445 0.24 +0.4
95,784 - CSW01_14445 0.27 -0.3
95,904 + CSW01_14445 0.37 -0.9
95,932 - CSW01_14445 0.39 -0.6
95,932 - CSW01_14445 0.39 -0.2
96,017 - CSW01_14445 0.46 -0.5
96,085 - CSW01_14445 0.52 -0.2
96,085 - CSW01_14445 0.52 -1.4
96,130 + CSW01_14445 0.56 +0.1
96,130 + CSW01_14445 0.56 -0.2
96,138 - CSW01_14445 0.57 +0.2
96,138 - CSW01_14445 0.57 +0.2
96,143 - CSW01_14445 0.57 +0.0
96,145 + CSW01_14445 0.57 -0.6
96,217 + CSW01_14445 0.63 -0.1

Or see this region's nucleotide sequence