Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14155

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_14150 and CSW01_14155 are separated by 0 nucleotidesCSW01_14155 and CSW01_14160 are separated by 102 nucleotidesCSW01_14160 and CSW01_14165 are separated by 172 nucleotides CSW01_14150: CSW01_14150 - hypothetical protein, at 23,394 to 26,651 _14150 CSW01_14155: CSW01_14155 - hypothetical protein, at 26,652 to 27,380 _14155 CSW01_14160: CSW01_14160 - glutathione S-transferase, at 27,483 to 27,884 _14160 CSW01_14165: CSW01_14165 - fucose 4-O-acetylase, at 28,057 to 29,097 _14165 Position (kb) 26 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 25.702 kb on - strand, within CSW01_14150at 25.745 kb on - strand, within CSW01_14150at 25.788 kb on + strand, within CSW01_14150at 25.842 kb on - strand, within CSW01_14150at 25.998 kb on + strand, within CSW01_14150at 25.998 kb on + strand, within CSW01_14150at 25.998 kb on + strand, within CSW01_14150at 25.998 kb on + strand, within CSW01_14150at 25.998 kb on + strand, within CSW01_14150at 26.006 kb on - strand, within CSW01_14150at 26.006 kb on - strand, within CSW01_14150at 26.006 kb on - strand, within CSW01_14150at 26.006 kb on - strand, within CSW01_14150at 26.006 kb on - strand, within CSW01_14150at 26.021 kb on + strand, within CSW01_14150at 26.032 kb on - strand, within CSW01_14150at 26.054 kb on - strand, within CSW01_14150at 26.238 kb on - strand, within CSW01_14150at 26.255 kb on + strand, within CSW01_14150at 26.255 kb on + strand, within CSW01_14150at 26.255 kb on + strand, within CSW01_14150at 26.263 kb on - strand, within CSW01_14150at 26.263 kb on - strand, within CSW01_14150at 26.263 kb on - strand, within CSW01_14150at 26.263 kb on - strand, within CSW01_14150at 26.268 kb on - strand, within CSW01_14150at 26.333 kb on + strandat 26.352 kb on - strandat 26.380 kb on - strandat 26.407 kb on + strandat 26.415 kb on - strandat 26.415 kb on - strandat 26.415 kb on - strandat 26.415 kb on - strandat 26.415 kb on - strandat 26.427 kb on + strandat 26.430 kb on - strandat 26.435 kb on - strandat 26.470 kb on + strandat 26.470 kb on + strandat 26.470 kb on + strandat 26.470 kb on + strandat 26.478 kb on - strandat 26.480 kb on + strandat 26.517 kb on + strandat 26.533 kb on + strandat 26.549 kb on - strandat 26.606 kb on + strandat 27.380 kb on + strandat 27.388 kb on - strandat 27.448 kb on - strandat 27.490 kb on + strandat 27.490 kb on + strandat 27.495 kb on + strandat 27.495 kb on + strandat 27.495 kb on + strandat 27.596 kb on - strand, within CSW01_14160at 27.623 kb on + strand, within CSW01_14160at 27.623 kb on + strand, within CSW01_14160at 27.631 kb on - strand, within CSW01_14160at 27.631 kb on - strand, within CSW01_14160at 27.693 kb on + strand, within CSW01_14160at 27.693 kb on - strand, within CSW01_14160at 27.709 kb on + strand, within CSW01_14160at 27.740 kb on - strand, within CSW01_14160at 27.790 kb on + strand, within CSW01_14160at 27.811 kb on + strand, within CSW01_14160at 27.828 kb on + strand, within CSW01_14160at 27.828 kb on + strand, within CSW01_14160at 27.830 kb on + strand, within CSW01_14160at 27.863 kb on + strandat 28.004 kb on - strandat 28.145 kb on - strandat 28.198 kb on + strand, within CSW01_14165at 28.346 kb on + strand, within CSW01_14165at 28.348 kb on + strand, within CSW01_14165at 28.354 kb on - strand, within CSW01_14165at 28.368 kb on + strand, within CSW01_14165at 28.368 kb on + strand, within CSW01_14165at 28.375 kb on + strand, within CSW01_14165at 28.375 kb on + strand, within CSW01_14165at 28.375 kb on + strand, within CSW01_14165at 28.375 kb on + strand, within CSW01_14165

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
remove
25,702 - CSW01_14150 0.71 +0.1
25,745 - CSW01_14150 0.72 +0.5
25,788 + CSW01_14150 0.73 +0.5
25,842 - CSW01_14150 0.75 -0.5
25,998 + CSW01_14150 0.80 -2.6
25,998 + CSW01_14150 0.80 -0.5
25,998 + CSW01_14150 0.80 +0.6
25,998 + CSW01_14150 0.80 +0.5
25,998 + CSW01_14150 0.80 +0.4
26,006 - CSW01_14150 0.80 -1.7
26,006 - CSW01_14150 0.80 +0.1
26,006 - CSW01_14150 0.80 -0.5
26,006 - CSW01_14150 0.80 -0.7
26,006 - CSW01_14150 0.80 -0.7
26,021 + CSW01_14150 0.81 +0.1
26,032 - CSW01_14150 0.81 +0.7
26,054 - CSW01_14150 0.82 +0.4
26,238 - CSW01_14150 0.87 +1.9
26,255 + CSW01_14150 0.88 +0.4
26,255 + CSW01_14150 0.88 -1.0
26,255 + CSW01_14150 0.88 +0.2
26,263 - CSW01_14150 0.88 +0.5
26,263 - CSW01_14150 0.88 -0.7
26,263 - CSW01_14150 0.88 -1.2
26,263 - CSW01_14150 0.88 -0.7
26,268 - CSW01_14150 0.88 +0.8
26,333 + +0.3
26,352 - -0.5
26,380 - +0.2
26,407 + -0.0
26,415 - +0.1
26,415 - +0.1
26,415 - +1.5
26,415 - +0.4
26,415 - -1.0
26,427 + -0.9
26,430 - -0.5
26,435 - -2.1
26,470 + -0.8
26,470 + +0.1
26,470 + +1.7
26,470 + +0.7
26,478 - +0.5
26,480 + -1.0
26,517 + +0.1
26,533 + -0.6
26,549 - -0.7
26,606 + +0.4
27,380 + -1.4
27,388 - +0.9
27,448 - +1.6
27,490 + +0.1
27,490 + -0.4
27,495 + -0.2
27,495 + +0.4
27,495 + +1.3
27,596 - CSW01_14160 0.28 +0.1
27,623 + CSW01_14160 0.35 +0.0
27,623 + CSW01_14160 0.35 +0.7
27,631 - CSW01_14160 0.37 +0.9
27,631 - CSW01_14160 0.37 -0.8
27,693 + CSW01_14160 0.52 +0.9
27,693 - CSW01_14160 0.52 -3.1
27,709 + CSW01_14160 0.56 -0.0
27,740 - CSW01_14160 0.64 +0.2
27,790 + CSW01_14160 0.76 -0.4
27,811 + CSW01_14160 0.82 -0.9
27,828 + CSW01_14160 0.86 +1.2
27,828 + CSW01_14160 0.86 +1.0
27,830 + CSW01_14160 0.86 -0.3
27,863 + +0.2
28,004 - +0.2
28,145 - +0.2
28,198 + CSW01_14165 0.14 -0.9
28,346 + CSW01_14165 0.28 -0.1
28,348 + CSW01_14165 0.28 +1.4
28,354 - CSW01_14165 0.29 +0.6
28,368 + CSW01_14165 0.30 +0.4
28,368 + CSW01_14165 0.30 -1.5
28,375 + CSW01_14165 0.31 +1.0
28,375 + CSW01_14165 0.31 +0.2
28,375 + CSW01_14165 0.31 -0.6
28,375 + CSW01_14165 0.31 -0.2

Or see this region's nucleotide sequence