Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14150

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_14140 and CSW01_14145 overlap by 1 nucleotidesCSW01_14145 and CSW01_14150 overlap by 4 nucleotidesCSW01_14150 and CSW01_14155 are separated by 0 nucleotidesCSW01_14155 and CSW01_14160 are separated by 102 nucleotides CSW01_14140: CSW01_14140 - type VI secretion system tip protein VgrG, at 20,426 to 22,510 _14140 CSW01_14145: CSW01_14145 - DUF4123 domain-containing protein, at 22,510 to 23,397 _14145 CSW01_14150: CSW01_14150 - hypothetical protein, at 23,394 to 26,651 _14150 CSW01_14155: CSW01_14155 - hypothetical protein, at 26,652 to 27,380 _14155 CSW01_14160: CSW01_14160 - glutathione S-transferase, at 27,483 to 27,884 _14160 Position (kb) 23 24 25 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 22.404 kb on + strandat 22.425 kb on - strandat 22.439 kb on - strandat 22.456 kb on + strandat 22.464 kb on + strandat 22.464 kb on + strandat 22.472 kb on - strandat 22.484 kb on - strandat 22.495 kb on + strandat 22.531 kb on + strandat 22.534 kb on + strandat 22.542 kb on - strandat 22.542 kb on - strandat 22.542 kb on - strandat 22.698 kb on + strand, within CSW01_14145at 22.698 kb on + strand, within CSW01_14145at 22.698 kb on + strand, within CSW01_14145at 22.854 kb on + strand, within CSW01_14145at 22.862 kb on + strand, within CSW01_14145at 22.862 kb on - strand, within CSW01_14145at 22.969 kb on + strand, within CSW01_14145at 23.002 kb on - strand, within CSW01_14145at 23.019 kb on - strand, within CSW01_14145at 23.029 kb on - strand, within CSW01_14145at 23.079 kb on + strand, within CSW01_14145at 23.079 kb on + strand, within CSW01_14145at 23.079 kb on + strand, within CSW01_14145at 23.087 kb on + strand, within CSW01_14145at 23.087 kb on - strand, within CSW01_14145at 23.121 kb on - strand, within CSW01_14145at 23.148 kb on + strand, within CSW01_14145at 23.224 kb on - strand, within CSW01_14145at 23.244 kb on - strand, within CSW01_14145at 23.341 kb on - strandat 23.358 kb on - strandat 23.386 kb on + strandat 23.386 kb on + strandat 23.394 kb on - strandat 23.394 kb on - strandat 23.432 kb on - strandat 23.437 kb on - strandat 23.506 kb on + strandat 23.613 kb on - strandat 23.638 kb on - strandat 23.676 kb on + strandat 23.779 kb on + strand, within CSW01_14150at 23.785 kb on - strand, within CSW01_14150at 23.797 kb on - strand, within CSW01_14150at 23.833 kb on - strand, within CSW01_14150at 23.843 kb on - strand, within CSW01_14150at 23.869 kb on + strand, within CSW01_14150at 23.874 kb on + strand, within CSW01_14150at 23.893 kb on + strand, within CSW01_14150at 23.896 kb on - strand, within CSW01_14150at 23.901 kb on - strand, within CSW01_14150at 23.924 kb on + strand, within CSW01_14150at 23.947 kb on + strand, within CSW01_14150at 24.325 kb on + strand, within CSW01_14150at 24.461 kb on + strand, within CSW01_14150at 24.512 kb on + strand, within CSW01_14150at 24.518 kb on - strand, within CSW01_14150at 24.520 kb on + strand, within CSW01_14150at 24.528 kb on - strand, within CSW01_14150at 24.605 kb on + strand, within CSW01_14150at 24.613 kb on - strand, within CSW01_14150at 24.613 kb on - strand, within CSW01_14150at 24.613 kb on - strand, within CSW01_14150at 24.632 kb on - strand, within CSW01_14150at 24.632 kb on - strand, within CSW01_14150at 24.633 kb on + strand, within CSW01_14150at 24.657 kb on + strand, within CSW01_14150at 24.659 kb on + strand, within CSW01_14150at 24.659 kb on + strand, within CSW01_14150at 24.678 kb on + strand, within CSW01_14150at 24.678 kb on - strand, within CSW01_14150at 24.685 kb on + strand, within CSW01_14150at 24.687 kb on - strand, within CSW01_14150at 24.693 kb on - strand, within CSW01_14150at 24.723 kb on - strand, within CSW01_14150at 24.790 kb on - strand, within CSW01_14150at 24.909 kb on + strand, within CSW01_14150at 24.917 kb on - strand, within CSW01_14150at 25.043 kb on + strand, within CSW01_14150at 25.076 kb on + strand, within CSW01_14150at 25.106 kb on + strand, within CSW01_14150at 25.151 kb on + strand, within CSW01_14150at 25.151 kb on + strand, within CSW01_14150at 25.159 kb on - strand, within CSW01_14150at 25.159 kb on - strand, within CSW01_14150at 25.196 kb on - strand, within CSW01_14150at 25.243 kb on - strand, within CSW01_14150at 25.312 kb on - strand, within CSW01_14150at 25.379 kb on + strand, within CSW01_14150at 25.379 kb on + strand, within CSW01_14150at 25.387 kb on - strand, within CSW01_14150at 25.387 kb on - strand, within CSW01_14150at 25.387 kb on - strand, within CSW01_14150at 25.402 kb on + strand, within CSW01_14150at 25.405 kb on - strand, within CSW01_14150at 25.410 kb on - strand, within CSW01_14150at 25.525 kb on + strand, within CSW01_14150at 25.547 kb on - strand, within CSW01_14150at 25.548 kb on - strand, within CSW01_14150at 25.702 kb on - strand, within CSW01_14150at 25.745 kb on - strand, within CSW01_14150at 25.788 kb on + strand, within CSW01_14150at 25.842 kb on - strand, within CSW01_14150at 25.998 kb on + strand, within CSW01_14150at 25.998 kb on + strand, within CSW01_14150at 25.998 kb on + strand, within CSW01_14150at 25.998 kb on + strand, within CSW01_14150at 25.998 kb on + strand, within CSW01_14150at 26.006 kb on - strand, within CSW01_14150at 26.006 kb on - strand, within CSW01_14150at 26.006 kb on - strand, within CSW01_14150at 26.006 kb on - strand, within CSW01_14150at 26.006 kb on - strand, within CSW01_14150at 26.021 kb on + strand, within CSW01_14150at 26.032 kb on - strand, within CSW01_14150at 26.054 kb on - strand, within CSW01_14150at 26.238 kb on - strand, within CSW01_14150at 26.255 kb on + strand, within CSW01_14150at 26.255 kb on + strand, within CSW01_14150at 26.255 kb on + strand, within CSW01_14150at 26.263 kb on - strand, within CSW01_14150at 26.263 kb on - strand, within CSW01_14150at 26.263 kb on - strand, within CSW01_14150at 26.263 kb on - strand, within CSW01_14150at 26.268 kb on - strand, within CSW01_14150at 26.333 kb on + strandat 26.352 kb on - strandat 26.380 kb on - strandat 26.407 kb on + strandat 26.415 kb on - strandat 26.415 kb on - strandat 26.415 kb on - strandat 26.415 kb on - strandat 26.415 kb on - strandat 26.427 kb on + strandat 26.430 kb on - strandat 26.435 kb on - strandat 26.470 kb on + strandat 26.470 kb on + strandat 26.470 kb on + strandat 26.470 kb on + strandat 26.478 kb on - strandat 26.480 kb on + strandat 26.517 kb on + strandat 26.533 kb on + strandat 26.549 kb on - strandat 26.606 kb on + strandat 27.380 kb on + strandat 27.388 kb on - strandat 27.448 kb on - strandat 27.490 kb on + strandat 27.490 kb on + strandat 27.495 kb on + strandat 27.495 kb on + strandat 27.495 kb on + strandat 27.596 kb on - strand, within CSW01_14160at 27.623 kb on + strand, within CSW01_14160at 27.623 kb on + strand, within CSW01_14160at 27.631 kb on - strand, within CSW01_14160at 27.631 kb on - strand, within CSW01_14160

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
remove
22,404 + -1.3
22,425 - +0.4
22,439 - +0.7
22,456 + +0.5
22,464 + -0.6
22,464 + +0.9
22,472 - +0.4
22,484 - +1.8
22,495 + -0.0
22,531 + -0.4
22,534 + +0.6
22,542 - -0.3
22,542 - -0.1
22,542 - -1.4
22,698 + CSW01_14145 0.21 -0.5
22,698 + CSW01_14145 0.21 -0.2
22,698 + CSW01_14145 0.21 +0.1
22,854 + CSW01_14145 0.39 -0.8
22,862 + CSW01_14145 0.40 -1.6
22,862 - CSW01_14145 0.40 -0.2
22,969 + CSW01_14145 0.52 +0.2
23,002 - CSW01_14145 0.55 +1.0
23,019 - CSW01_14145 0.57 +0.6
23,029 - CSW01_14145 0.58 +0.4
23,079 + CSW01_14145 0.64 -2.9
23,079 + CSW01_14145 0.64 -0.1
23,079 + CSW01_14145 0.64 -0.6
23,087 + CSW01_14145 0.65 -0.2
23,087 - CSW01_14145 0.65 +0.6
23,121 - CSW01_14145 0.69 +0.0
23,148 + CSW01_14145 0.72 -0.8
23,224 - CSW01_14145 0.80 -0.7
23,244 - CSW01_14145 0.83 -0.0
23,341 - +0.6
23,358 - -0.3
23,386 + +1.2
23,386 + -1.5
23,394 - -0.7
23,394 - -1.5
23,432 - +2.0
23,437 - +1.2
23,506 + -0.0
23,613 - -0.0
23,638 - -0.3
23,676 + +0.1
23,779 + CSW01_14150 0.12 -0.0
23,785 - CSW01_14150 0.12 -0.4
23,797 - CSW01_14150 0.12 +1.7
23,833 - CSW01_14150 0.13 +0.2
23,843 - CSW01_14150 0.14 +0.4
23,869 + CSW01_14150 0.15 +0.1
23,874 + CSW01_14150 0.15 +0.1
23,893 + CSW01_14150 0.15 +0.6
23,896 - CSW01_14150 0.15 -0.1
23,901 - CSW01_14150 0.16 +0.6
23,924 + CSW01_14150 0.16 -0.1
23,947 + CSW01_14150 0.17 -1.1
24,325 + CSW01_14150 0.29 +0.2
24,461 + CSW01_14150 0.33 +0.1
24,512 + CSW01_14150 0.34 +0.4
24,518 - CSW01_14150 0.34 -1.0
24,520 + CSW01_14150 0.35 -1.4
24,528 - CSW01_14150 0.35 +0.1
24,605 + CSW01_14150 0.37 -0.8
24,613 - CSW01_14150 0.37 -0.1
24,613 - CSW01_14150 0.37 -1.1
24,613 - CSW01_14150 0.37 -1.2
24,632 - CSW01_14150 0.38 +0.9
24,632 - CSW01_14150 0.38 -1.1
24,633 + CSW01_14150 0.38 +1.8
24,657 + CSW01_14150 0.39 -0.5
24,659 + CSW01_14150 0.39 +1.4
24,659 + CSW01_14150 0.39 +0.4
24,678 + CSW01_14150 0.39 -0.2
24,678 - CSW01_14150 0.39 +0.4
24,685 + CSW01_14150 0.40 +1.1
24,687 - CSW01_14150 0.40 +0.4
24,693 - CSW01_14150 0.40 -0.5
24,723 - CSW01_14150 0.41 +0.2
24,790 - CSW01_14150 0.43 +0.2
24,909 + CSW01_14150 0.47 -0.8
24,917 - CSW01_14150 0.47 +0.6
25,043 + CSW01_14150 0.51 -0.2
25,076 + CSW01_14150 0.52 -0.4
25,106 + CSW01_14150 0.53 -1.2
25,151 + CSW01_14150 0.54 -0.8
25,151 + CSW01_14150 0.54 +0.6
25,159 - CSW01_14150 0.54 -0.3
25,159 - CSW01_14150 0.54 +0.1
25,196 - CSW01_14150 0.55 +1.3
25,243 - CSW01_14150 0.57 -0.2
25,312 - CSW01_14150 0.59 -0.7
25,379 + CSW01_14150 0.61 -0.0
25,379 + CSW01_14150 0.61 +0.2
25,387 - CSW01_14150 0.61 +1.2
25,387 - CSW01_14150 0.61 +0.5
25,387 - CSW01_14150 0.61 +0.4
25,402 + CSW01_14150 0.62 -1.1
25,405 - CSW01_14150 0.62 -0.2
25,410 - CSW01_14150 0.62 -0.8
25,525 + CSW01_14150 0.65 -0.3
25,547 - CSW01_14150 0.66 -0.2
25,548 - CSW01_14150 0.66 -0.6
25,702 - CSW01_14150 0.71 +0.1
25,745 - CSW01_14150 0.72 +0.5
25,788 + CSW01_14150 0.73 +0.5
25,842 - CSW01_14150 0.75 -0.5
25,998 + CSW01_14150 0.80 -2.6
25,998 + CSW01_14150 0.80 -0.5
25,998 + CSW01_14150 0.80 +0.6
25,998 + CSW01_14150 0.80 +0.5
25,998 + CSW01_14150 0.80 +0.4
26,006 - CSW01_14150 0.80 -1.7
26,006 - CSW01_14150 0.80 +0.1
26,006 - CSW01_14150 0.80 -0.5
26,006 - CSW01_14150 0.80 -0.7
26,006 - CSW01_14150 0.80 -0.7
26,021 + CSW01_14150 0.81 +0.1
26,032 - CSW01_14150 0.81 +0.7
26,054 - CSW01_14150 0.82 +0.4
26,238 - CSW01_14150 0.87 +1.9
26,255 + CSW01_14150 0.88 +0.4
26,255 + CSW01_14150 0.88 -1.0
26,255 + CSW01_14150 0.88 +0.2
26,263 - CSW01_14150 0.88 +0.5
26,263 - CSW01_14150 0.88 -0.7
26,263 - CSW01_14150 0.88 -1.2
26,263 - CSW01_14150 0.88 -0.7
26,268 - CSW01_14150 0.88 +0.8
26,333 + +0.3
26,352 - -0.5
26,380 - +0.2
26,407 + -0.0
26,415 - +0.1
26,415 - +0.1
26,415 - +1.5
26,415 - +0.4
26,415 - -1.0
26,427 + -0.9
26,430 - -0.5
26,435 - -2.1
26,470 + -0.8
26,470 + +0.1
26,470 + +1.7
26,470 + +0.7
26,478 - +0.5
26,480 + -1.0
26,517 + +0.1
26,533 + -0.6
26,549 - -0.7
26,606 + +0.4
27,380 + -1.4
27,388 - +0.9
27,448 - +1.6
27,490 + +0.1
27,490 + -0.4
27,495 + -0.2
27,495 + +0.4
27,495 + +1.3
27,596 - CSW01_14160 0.28 +0.1
27,623 + CSW01_14160 0.35 +0.0
27,623 + CSW01_14160 0.35 +0.7
27,631 - CSW01_14160 0.37 +0.9
27,631 - CSW01_14160 0.37 -0.8

Or see this region's nucleotide sequence