Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14120 and CSW01_14125 are separated by 205 nucleotides CSW01_14125 and CSW01_14130 are separated by 133 nucleotides CSW01_14130 and CSW01_14135 are separated by 81 nucleotides
CSW01_14120: CSW01_14120 - 4-alpha-glucanotransferase, at 14,810 to 16,990
_14120
CSW01_14125: CSW01_14125 - 1,4-alpha-glucan branching enzyme, at 17,196 to 19,385
_14125
CSW01_14130: CSW01_14130 - hypothetical protein, at 19,519 to 19,698
_14130
CSW01_14135: CSW01_14135 - type VI secretion system tube protein Hcp, at 19,780 to 20,298
_14135
Position (kb) 17
18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 16.239 kb on - strand, within CSW01_14120 at 16.264 kb on - strand, within CSW01_14120 at 16.275 kb on - strand, within CSW01_14120 at 16.300 kb on - strand, within CSW01_14120 at 16.373 kb on + strand, within CSW01_14120 at 16.373 kb on + strand, within CSW01_14120 at 16.381 kb on - strand, within CSW01_14120 at 16.405 kb on - strand, within CSW01_14120 at 16.526 kb on - strand, within CSW01_14120 at 16.557 kb on + strand, within CSW01_14120 at 16.557 kb on + strand, within CSW01_14120 at 16.565 kb on - strand, within CSW01_14120 at 16.565 kb on - strand, within CSW01_14120 at 16.565 kb on - strand, within CSW01_14120 at 16.565 kb on - strand, within CSW01_14120 at 16.623 kb on - strand, within CSW01_14120 at 16.772 kb on + strand, within CSW01_14120 at 16.780 kb on - strand at 17.072 kb on + strand at 17.080 kb on - strand at 17.189 kb on - strand at 17.286 kb on + strand at 17.301 kb on + strand at 17.427 kb on - strand, within CSW01_14125 at 17.441 kb on + strand, within CSW01_14125 at 17.475 kb on - strand, within CSW01_14125 at 17.520 kb on - strand, within CSW01_14125 at 17.586 kb on - strand, within CSW01_14125 at 17.629 kb on - strand, within CSW01_14125 at 17.679 kb on - strand, within CSW01_14125 at 17.829 kb on + strand, within CSW01_14125 at 17.837 kb on - strand, within CSW01_14125 at 17.921 kb on + strand, within CSW01_14125 at 18.059 kb on + strand, within CSW01_14125 at 18.194 kb on - strand, within CSW01_14125 at 18.201 kb on + strand, within CSW01_14125 at 18.232 kb on - strand, within CSW01_14125 at 18.377 kb on + strand, within CSW01_14125 at 18.385 kb on - strand, within CSW01_14125 at 18.385 kb on - strand, within CSW01_14125 at 18.390 kb on - strand, within CSW01_14125 at 18.757 kb on + strand, within CSW01_14125 at 18.781 kb on + strand, within CSW01_14125 at 19.072 kb on + strand, within CSW01_14125 at 19.098 kb on + strand, within CSW01_14125 at 19.261 kb on - strand at 19.265 kb on + strand at 19.444 kb on + strand at 19.451 kb on - strand at 19.452 kb on - strand at 19.452 kb on - strand at 19.504 kb on - strand at 19.519 kb on - strand at 19.571 kb on - strand, within CSW01_14130 at 19.918 kb on + strand, within CSW01_14135 at 19.925 kb on - strand, within CSW01_14135 at 19.925 kb on - strand, within CSW01_14135 at 19.925 kb on - strand, within CSW01_14135 at 19.956 kb on - strand, within CSW01_14135 at 19.974 kb on - strand, within CSW01_14135 at 20.004 kb on - strand, within CSW01_14135 at 20.019 kb on + strand, within CSW01_14135 at 20.022 kb on + strand, within CSW01_14135 at 20.034 kb on + strand, within CSW01_14135 at 20.034 kb on + strand, within CSW01_14135 at 20.034 kb on + strand, within CSW01_14135 at 20.034 kb on + strand, within CSW01_14135 at 20.129 kb on - strand, within CSW01_14135
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A remove 16,239 - CSW01_14120 0.66 -0.2 16,264 - CSW01_14120 0.67 -0.4 16,275 - CSW01_14120 0.67 -1.9 16,300 - CSW01_14120 0.68 -0.4 16,373 + CSW01_14120 0.72 -0.9 16,373 + CSW01_14120 0.72 -0.4 16,381 - CSW01_14120 0.72 -0.9 16,405 - CSW01_14120 0.73 -0.2 16,526 - CSW01_14120 0.79 +0.4 16,557 + CSW01_14120 0.80 +1.6 16,557 + CSW01_14120 0.80 +0.0 16,565 - CSW01_14120 0.80 +0.9 16,565 - CSW01_14120 0.80 +0.2 16,565 - CSW01_14120 0.80 +1.0 16,565 - CSW01_14120 0.80 -0.2 16,623 - CSW01_14120 0.83 -2.6 16,772 + CSW01_14120 0.90 +1.1 16,780 - +1.1 17,072 + -0.0 17,080 - -0.0 17,189 - -0.2 17,286 + -1.4 17,301 + +0.8 17,427 - CSW01_14125 0.11 +0.9 17,441 + CSW01_14125 0.11 +0.4 17,475 - CSW01_14125 0.13 +0.1 17,520 - CSW01_14125 0.15 +1.7 17,586 - CSW01_14125 0.18 -0.2 17,629 - CSW01_14125 0.20 -1.6 17,679 - CSW01_14125 0.22 -0.5 17,829 + CSW01_14125 0.29 +0.2 17,837 - CSW01_14125 0.29 -2.4 17,921 + CSW01_14125 0.33 -0.6 18,059 + CSW01_14125 0.39 -0.9 18,194 - CSW01_14125 0.46 +0.4 18,201 + CSW01_14125 0.46 +0.6 18,232 - CSW01_14125 0.47 -1.9 18,377 + CSW01_14125 0.54 -2.8 18,385 - CSW01_14125 0.54 -0.6 18,385 - CSW01_14125 0.54 -0.8 18,390 - CSW01_14125 0.55 +1.1 18,757 + CSW01_14125 0.71 -3.1 18,781 + CSW01_14125 0.72 -3.3 19,072 + CSW01_14125 0.86 -1.6 19,098 + CSW01_14125 0.87 -1.9 19,261 - +2.0 19,265 + -1.9 19,444 + -0.7 19,451 - +0.4 19,452 - -1.2 19,452 - +0.6 19,504 - +0.2 19,519 - +2.2 19,571 - CSW01_14130 0.29 -0.1 19,918 + CSW01_14135 0.27 -0.5 19,925 - CSW01_14135 0.28 -0.2 19,925 - CSW01_14135 0.28 -0.1 19,925 - CSW01_14135 0.28 -1.7 19,956 - CSW01_14135 0.34 -0.5 19,974 - CSW01_14135 0.37 -0.4 20,004 - CSW01_14135 0.43 +0.4 20,019 + CSW01_14135 0.46 +0.2 20,022 + CSW01_14135 0.47 -0.9 20,034 + CSW01_14135 0.49 -1.6 20,034 + CSW01_14135 0.49 -0.6 20,034 + CSW01_14135 0.49 +2.8 20,034 + CSW01_14135 0.49 +0.4 20,129 - CSW01_14135 0.67 -1.2
Or see this region's nucleotide sequence