Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13985

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
2,977,266	+		CSW01_13980	0.10	-2.9
2,977,266	+		CSW01_13980	0.10	-0.2
2,977,266	+		CSW01_13980	0.10	+1.4
2,977,271	+		CSW01_13980	0.11	-2.2
2,977,274	-		CSW01_13980	0.11	+0.1
2,977,279	-		CSW01_13980	0.12	+0.4
2,977,290	+		CSW01_13980	0.13	-0.8
2,977,290	-		CSW01_13980	0.13	-0.1
2,977,325	+		CSW01_13980	0.17	-1.9
2,977,330	+		CSW01_13980	0.17	+0.9
2,977,333	-		CSW01_13980	0.18	+0.3
2,977,333	-		CSW01_13980	0.18	+1.2
2,977,359	+		CSW01_13980	0.21	+0.6
2,977,359	+		CSW01_13980	0.21	-0.8
2,977,405	+		CSW01_13980	0.26	-0.5
2,977,405	+		CSW01_13980	0.26	-2.6
2,977,405	+		CSW01_13980	0.26	+0.9
2,977,434	+		CSW01_13980	0.29	+0.1
2,977,434	+		CSW01_13980	0.29	-0.3
2,977,434	+		CSW01_13980	0.29	+0.6
2,977,434	+		CSW01_13980	0.29	+0.3
2,977,434	+		CSW01_13980	0.29	+0.6
2,977,434	+		CSW01_13980	0.29	-0.9
2,977,434	+		CSW01_13980	0.29	-0.5
2,977,434	+		CSW01_13980	0.29	-2.2
2,977,434	+		CSW01_13980	0.29	-0.7
2,977,434	+		CSW01_13980	0.29	+0.2
2,977,434	+		CSW01_13980	0.29	+0.6
2,977,434	+		CSW01_13980	0.29	-0.6
2,977,434	+		CSW01_13980	0.29	+2.1
2,977,439	+		CSW01_13980	0.29	+0.5
2,977,442	-		CSW01_13980	0.30	+0.6
2,977,442	-		CSW01_13980	0.30	-0.7
2,977,442	-		CSW01_13980	0.30	+0.7
2,977,442	-		CSW01_13980	0.30	-1.6
2,977,442	-		CSW01_13980	0.30	-0.6
2,977,442	-		CSW01_13980	0.30	-0.4
2,977,442	-		CSW01_13980	0.30	-0.8
2,977,442	-		CSW01_13980	0.30	+0.9
2,977,442	-		CSW01_13980	0.30	+0.1
2,977,442	-		CSW01_13980	0.30	-0.3
2,977,442	-		CSW01_13980	0.30	+0.2
2,977,442	-		CSW01_13980	0.30	+0.5
2,977,510	+		CSW01_13980	0.37	-0.2
2,977,554	-		CSW01_13980	0.42	-1.3
2,977,599	-		CSW01_13980	0.47	-0.4
2,977,623	-		CSW01_13980	0.50	-0.2
2,977,639	+		CSW01_13980	0.51	+0.1
2,977,657	+		CSW01_13980	0.53	-0.5
2,977,657	+		CSW01_13980	0.53	+0.4
2,977,665	-		CSW01_13980	0.54	-0.7
2,977,665	-		CSW01_13980	0.54	-0.1
2,977,665	-		CSW01_13980	0.54	-0.3
2,977,665	-		CSW01_13980	0.54	+1.8
2,977,665	-		CSW01_13980	0.54	+0.3
2,977,690	-		CSW01_13980	0.57	-1.0
2,977,690	-		CSW01_13980	0.57	-0.3
2,977,692	+		CSW01_13980	0.57	+0.5
2,977,692	+		CSW01_13980	0.57	-0.3
2,977,700	-		CSW01_13980	0.58	+1.4
2,977,719	+		CSW01_13980	0.60	-0.3
2,977,731	+		CSW01_13980	0.62	+0.9
2,977,734	-		CSW01_13980	0.62	-1.6
2,977,739	+		CSW01_13980	0.62	+0.5
2,977,765	-		CSW01_13980	0.65	+0.4
2,977,785	-		CSW01_13980	0.68	-0.7
2,977,799	+		CSW01_13980	0.69	+0.4
2,977,799	+		CSW01_13980	0.69	-0.2
2,977,807	-		CSW01_13980	0.70	+0.0
2,977,807	-		CSW01_13980	0.70	-0.2
2,977,810	+		CSW01_13980	0.70	+1.1
2,977,810	+		CSW01_13980	0.70	+0.8
2,977,818	-		CSW01_13980	0.71	-0.0
2,977,818	-		CSW01_13980	0.71	+0.9
2,977,823	+		CSW01_13980	0.72	+0.0
2,977,840	+		CSW01_13980	0.74	-0.1
2,977,874	-		CSW01_13980	0.77	+0.0
2,977,874	-		CSW01_13980	0.77	+1.7
2,977,877	+		CSW01_13980	0.78	-0.2
2,977,879	-		CSW01_13980	0.78	-0.4
2,977,885	-		CSW01_13980	0.79	-0.1
2,977,895	+		CSW01_13980	0.80	-0.0
2,977,899	+		CSW01_13980	0.80	+0.2
2,977,903	-		CSW01_13980	0.81	+0.9
2,977,905	+		CSW01_13980	0.81	-0.2
2,977,907	-		CSW01_13980	0.81	+0.3
2,977,938	-		CSW01_13980	0.84	-1.1
2,977,943	-		CSW01_13980	0.85	-0.3
2,977,943	-		CSW01_13980	0.85	+0.3
2,977,968	+		CSW01_13980	0.88	-0.9
2,977,968	+		CSW01_13980	0.88	-0.8
2,977,968	+		CSW01_13980	0.88	+1.2
2,977,970	+		CSW01_13980	0.88	+0.2
2,977,970	+		CSW01_13980	0.88	+1.0
2,977,970	+		CSW01_13980	0.88	-0.2
2,977,970	+		CSW01_13980	0.88	-1.3
2,977,970	+		CSW01_13980	0.88	-0.5
2,977,970	+		CSW01_13980	0.88	+0.6
2,977,970	+		CSW01_13980	0.88	-0.3
2,977,976	-		CSW01_13980	0.89	+0.4
2,977,978	-		CSW01_13980	0.89	+0.4
2,977,996	+				-0.1
2,978,004	-				+0.5
2,978,034	-				-0.5
2,978,042	+				+0.7
2,978,050	-				+0.4
2,978,189	-				-0.5
2,978,295	-				+0.2
2,978,350	+				-2.5
2,978,350	+				+0.1
2,978,350	+				-0.6
2,978,350	+				+1.4
2,978,350	+				+0.7
2,978,358	-		CSW01_13985	0.10	+0.2
2,978,358	-		CSW01_13985	0.10	+0.4
2,978,358	-		CSW01_13985	0.10	-0.2
2,978,358	-		CSW01_13985	0.10	-0.3
2,978,358	-		CSW01_13985	0.10	-1.3
2,978,358	-		CSW01_13985	0.10	+0.2
2,978,358	-		CSW01_13985	0.10	+0.4
2,978,358	-		CSW01_13985	0.10	-0.4
2,978,358	-		CSW01_13985	0.10	+0.3
2,978,358	-		CSW01_13985	0.10	+0.7
2,978,373	-		CSW01_13985	0.11	+0.3
2,978,379	+		CSW01_13985	0.12	-0.7
2,978,454	-		CSW01_13985	0.18	-0.6
2,978,473	+		CSW01_13985	0.20	-1.2
2,978,488	+		CSW01_13985	0.21	-0.7
2,978,514	-		CSW01_13985	0.23	+0.4
2,978,556	-		CSW01_13985	0.27	-0.6
2,978,556	-		CSW01_13985	0.27	-0.0
2,978,566	-		CSW01_13985	0.28	-1.1
2,978,599	-		CSW01_13985	0.30	-1.4
2,978,617	+		CSW01_13985	0.32	-2.4
2,978,657	+		CSW01_13985	0.35	-0.5
2,978,657	+		CSW01_13985	0.35	-1.0
2,978,657	+		CSW01_13985	0.35	-0.5
2,978,659	+		CSW01_13985	0.35	+0.2
2,978,659	+		CSW01_13985	0.35	-0.2
2,978,665	-		CSW01_13985	0.36	-2.6
2,978,667	-		CSW01_13985	0.36	-0.2
2,978,667	-		CSW01_13985	0.36	+1.6
2,978,667	-		CSW01_13985	0.36	+1.4
2,978,693	-		CSW01_13985	0.38	-0.7
2,978,701	+		CSW01_13985	0.39	-0.1
2,978,742	+		CSW01_13985	0.42	+3.6
2,978,743	+		CSW01_13985	0.42	-2.9
2,978,748	+		CSW01_13985	0.43	-1.1
2,978,751	-		CSW01_13985	0.43	-1.2
2,978,803	+		CSW01_13985	0.47	+0.7
2,978,837	+		CSW01_13985	0.50	-0.1
2,978,920	+		CSW01_13985	0.57	-0.1
2,978,950	+		CSW01_13985	0.59	-0.3
2,978,951	-		CSW01_13985	0.60	-0.3
2,978,958	-		CSW01_13985	0.60	+0.6
2,979,018	+		CSW01_13985	0.65	-1.9
2,979,039	-		CSW01_13985	0.67	-1.1
2,979,072	-		CSW01_13985	0.70	+0.9
2,979,137	-		CSW01_13985	0.75	-0.2
2,979,158	+		CSW01_13985	0.77	+0.6
2,979,158	+		CSW01_13985	0.77	-0.4
2,979,158	+		CSW01_13985	0.77	+0.3
2,979,166	-		CSW01_13985	0.77	-0.3
2,979,166	-		CSW01_13985	0.77	+0.4
2,979,183	+		CSW01_13985	0.79	-0.6
2,979,185	+		CSW01_13985	0.79	+0.2
2,979,193	-		CSW01_13985	0.80	-0.6
2,979,205	+		CSW01_13985	0.81	-0.3
2,979,205	+		CSW01_13985	0.81	+0.1
2,979,247	+		CSW01_13985	0.84	-0.5
2,979,301	+		CSW01_13985	0.89	-0.3
2,979,304	-		CSW01_13985	0.89	+0.1
2,979,304	-		CSW01_13985	0.89	+0.1
2,979,335	+				+0.9
2,979,355	+				+0.1
2,979,369	-				+0.4
2,979,376	+				-0.3