Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11510

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_11505 and CSW01_11510 are separated by 131 nucleotidesCSW01_11510 and CSW01_11515 are separated by 340 nucleotides CSW01_11505: CSW01_11505 - elongation factor Ts, at 2,445,814 to 2,446,656 _11505 CSW01_11510: CSW01_11510 - 30S ribosomal protein S2, at 2,446,788 to 2,447,516 _11510 CSW01_11515: CSW01_11515 - type I methionyl aminopeptidase, at 2,447,857 to 2,448,699 _11515 Position (kb) 2446 2447 2448Strain fitness (log2 ratio) -3 -2 -1 0 1at 2447.791 kb on + strandat 2447.837 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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2,447,791 + -2.8
2,447,837 + -0.1

Or see this region's nucleotide sequence