Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11010

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_10995 and CSW01_11000 overlap by 4 nucleotidesCSW01_11000 and CSW01_11005 overlap by 35 nucleotidesCSW01_11005 and CSW01_11010 overlap by 26 nucleotidesCSW01_11010 and CSW01_11015 overlap by 14 nucleotidesCSW01_11015 and CSW01_11020 overlap by 4 nucleotidesCSW01_11020 and CSW01_11025 are separated by 14 nucleotidesCSW01_11025 and CSW01_11030 overlap by 1 nucleotides CSW01_10995: CSW01_10995 - hypothetical protein, at 2,342,966 to 2,343,247 _10995 CSW01_11000: CSW01_11000 - hypothetical protein, at 2,343,244 to 2,343,489 _11000 CSW01_11005: CSW01_11005 - hypothetical protein, at 2,343,455 to 2,343,796 _11005 CSW01_11010: CSW01_11010 - lysozyme, at 2,343,771 to 2,344,358 _11010 CSW01_11015: CSW01_11015 - hypothetical protein, at 2,344,345 to 2,344,572 _11015 CSW01_11020: CSW01_11020 - molecular chaperone DnaK, at 2,344,569 to 2,344,778 _11020 CSW01_11025: CSW01_11025 - DUF2597 domain-containing protein, at 2,344,793 to 2,345,251 _11025 CSW01_11030: CSW01_11030 - DUF2586 domain-containing protein, at 2,345,251 to 2,346,360 _11030 Position (kb) 2343 2344 2345Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2342.777 kb on + strandat 2342.803 kb on - strandat 2342.900 kb on + strandat 2342.900 kb on + strandat 2343.003 kb on + strand, within CSW01_10995at 2343.013 kb on - strand, within CSW01_10995at 2343.048 kb on + strand, within CSW01_10995at 2343.048 kb on + strand, within CSW01_10995at 2343.056 kb on - strand, within CSW01_10995at 2343.056 kb on - strand, within CSW01_10995at 2343.056 kb on - strand, within CSW01_10995at 2343.115 kb on - strand, within CSW01_10995at 2343.163 kb on - strand, within CSW01_10995at 2343.237 kb on + strandat 2343.245 kb on - strandat 2343.287 kb on - strand, within CSW01_11000at 2343.408 kb on - strand, within CSW01_11000at 2343.408 kb on - strand, within CSW01_11000at 2343.470 kb on - strandat 2343.478 kb on + strandat 2343.510 kb on - strand, within CSW01_11005at 2343.522 kb on + strand, within CSW01_11005at 2343.522 kb on + strand, within CSW01_11005at 2343.530 kb on - strand, within CSW01_11005at 2343.530 kb on - strand, within CSW01_11005at 2343.530 kb on - strand, within CSW01_11005at 2343.530 kb on - strand, within CSW01_11005at 2343.569 kb on - strand, within CSW01_11005at 2343.604 kb on + strand, within CSW01_11005at 2343.607 kb on - strand, within CSW01_11005at 2343.647 kb on + strand, within CSW01_11005at 2343.652 kb on + strand, within CSW01_11005at 2343.684 kb on - strand, within CSW01_11005at 2343.696 kb on - strand, within CSW01_11005at 2343.711 kb on + strand, within CSW01_11005at 2343.711 kb on + strand, within CSW01_11005at 2343.711 kb on + strand, within CSW01_11005at 2343.733 kb on - strand, within CSW01_11005at 2343.749 kb on - strand, within CSW01_11005at 2343.830 kb on + strand, within CSW01_11010at 2343.863 kb on + strand, within CSW01_11010at 2343.866 kb on + strand, within CSW01_11010at 2343.866 kb on + strand, within CSW01_11010at 2343.873 kb on + strand, within CSW01_11010at 2343.876 kb on - strand, within CSW01_11010at 2343.876 kb on - strand, within CSW01_11010at 2343.876 kb on - strand, within CSW01_11010at 2343.881 kb on - strand, within CSW01_11010at 2343.881 kb on - strand, within CSW01_11010at 2343.881 kb on - strand, within CSW01_11010at 2343.898 kb on - strand, within CSW01_11010at 2343.919 kb on + strand, within CSW01_11010at 2343.922 kb on - strand, within CSW01_11010at 2343.993 kb on + strand, within CSW01_11010at 2343.995 kb on - strand, within CSW01_11010at 2344.000 kb on + strand, within CSW01_11010at 2344.018 kb on - strand, within CSW01_11010at 2344.049 kb on - strand, within CSW01_11010at 2344.049 kb on - strand, within CSW01_11010at 2344.085 kb on + strand, within CSW01_11010at 2344.085 kb on + strand, within CSW01_11010at 2344.085 kb on + strand, within CSW01_11010at 2344.093 kb on - strand, within CSW01_11010at 2344.093 kb on - strand, within CSW01_11010at 2344.107 kb on - strand, within CSW01_11010at 2344.167 kb on - strand, within CSW01_11010at 2344.174 kb on - strand, within CSW01_11010at 2344.174 kb on - strand, within CSW01_11010at 2344.174 kb on - strand, within CSW01_11010at 2344.181 kb on + strand, within CSW01_11010at 2344.181 kb on + strand, within CSW01_11010at 2344.189 kb on - strand, within CSW01_11010at 2344.208 kb on + strand, within CSW01_11010at 2344.216 kb on - strand, within CSW01_11010at 2344.244 kb on - strand, within CSW01_11010at 2344.244 kb on - strand, within CSW01_11010at 2344.261 kb on - strand, within CSW01_11010at 2344.438 kb on - strand, within CSW01_11015at 2344.458 kb on + strand, within CSW01_11015at 2344.458 kb on + strand, within CSW01_11015at 2344.458 kb on + strand, within CSW01_11015at 2344.458 kb on + strand, within CSW01_11015at 2344.458 kb on + strand, within CSW01_11015at 2344.458 kb on + strand, within CSW01_11015at 2344.463 kb on + strand, within CSW01_11015at 2344.466 kb on - strand, within CSW01_11015at 2344.466 kb on - strand, within CSW01_11015at 2344.466 kb on - strand, within CSW01_11015at 2344.466 kb on - strand, within CSW01_11015at 2344.466 kb on - strand, within CSW01_11015at 2344.508 kb on + strand, within CSW01_11015at 2344.561 kb on + strandat 2344.608 kb on - strand, within CSW01_11020at 2344.608 kb on - strand, within CSW01_11020at 2344.608 kb on - strand, within CSW01_11020at 2344.608 kb on - strand, within CSW01_11020at 2344.614 kb on + strand, within CSW01_11020at 2344.658 kb on + strand, within CSW01_11020at 2344.703 kb on + strand, within CSW01_11020at 2344.721 kb on - strand, within CSW01_11020at 2344.811 kb on + strandat 2344.839 kb on + strand, within CSW01_11025at 2344.847 kb on - strand, within CSW01_11025at 2344.847 kb on - strand, within CSW01_11025at 2344.955 kb on + strand, within CSW01_11025at 2345.068 kb on + strand, within CSW01_11025at 2345.076 kb on - strand, within CSW01_11025at 2345.146 kb on - strand, within CSW01_11025at 2345.154 kb on - strand, within CSW01_11025at 2345.257 kb on - strandat 2345.310 kb on + strandat 2345.316 kb on - strandat 2345.326 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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2,342,777 + -1.1
2,342,803 - -0.6
2,342,900 + -0.2
2,342,900 + -0.2
2,343,003 + CSW01_10995 0.13 -0.4
2,343,013 - CSW01_10995 0.17 -0.5
2,343,048 + CSW01_10995 0.29 +0.4
2,343,048 + CSW01_10995 0.29 -0.0
2,343,056 - CSW01_10995 0.32 +0.2
2,343,056 - CSW01_10995 0.32 -0.4
2,343,056 - CSW01_10995 0.32 -0.1
2,343,115 - CSW01_10995 0.53 -0.3
2,343,163 - CSW01_10995 0.70 +0.2
2,343,237 + +0.1
2,343,245 - -0.2
2,343,287 - CSW01_11000 0.17 +0.4
2,343,408 - CSW01_11000 0.67 +0.4
2,343,408 - CSW01_11000 0.67 +0.9
2,343,470 - +0.8
2,343,478 + +0.3
2,343,510 - CSW01_11005 0.16 +0.5
2,343,522 + CSW01_11005 0.20 -0.8
2,343,522 + CSW01_11005 0.20 +0.9
2,343,530 - CSW01_11005 0.22 -1.5
2,343,530 - CSW01_11005 0.22 -1.3
2,343,530 - CSW01_11005 0.22 +0.8
2,343,530 - CSW01_11005 0.22 +0.4
2,343,569 - CSW01_11005 0.33 -0.8
2,343,604 + CSW01_11005 0.44 +1.5
2,343,607 - CSW01_11005 0.44 -0.2
2,343,647 + CSW01_11005 0.56 -1.3
2,343,652 + CSW01_11005 0.58 +0.3
2,343,684 - CSW01_11005 0.67 -1.0
2,343,696 - CSW01_11005 0.70 +0.0
2,343,711 + CSW01_11005 0.75 -0.0
2,343,711 + CSW01_11005 0.75 -0.1
2,343,711 + CSW01_11005 0.75 -0.5
2,343,733 - CSW01_11005 0.81 -1.3
2,343,749 - CSW01_11005 0.86 +0.2
2,343,830 + CSW01_11010 0.10 -2.6
2,343,863 + CSW01_11010 0.16 +1.3
2,343,866 + CSW01_11010 0.16 -0.9
2,343,866 + CSW01_11010 0.16 -0.2
2,343,873 + CSW01_11010 0.17 -0.4
2,343,876 - CSW01_11010 0.18 -0.4
2,343,876 - CSW01_11010 0.18 +0.6
2,343,876 - CSW01_11010 0.18 +0.0
2,343,881 - CSW01_11010 0.19 -0.5
2,343,881 - CSW01_11010 0.19 -0.8
2,343,881 - CSW01_11010 0.19 +0.7
2,343,898 - CSW01_11010 0.22 -0.3
2,343,919 + CSW01_11010 0.25 -0.4
2,343,922 - CSW01_11010 0.26 -0.6
2,343,993 + CSW01_11010 0.38 +0.1
2,343,995 - CSW01_11010 0.38 +0.1
2,344,000 + CSW01_11010 0.39 +1.0
2,344,018 - CSW01_11010 0.42 +1.1
2,344,049 - CSW01_11010 0.47 -0.7
2,344,049 - CSW01_11010 0.47 +0.6
2,344,085 + CSW01_11010 0.53 +0.3
2,344,085 + CSW01_11010 0.53 -0.2
2,344,085 + CSW01_11010 0.53 -0.4
2,344,093 - CSW01_11010 0.55 -0.8
2,344,093 - CSW01_11010 0.55 +0.9
2,344,107 - CSW01_11010 0.57 -0.6
2,344,167 - CSW01_11010 0.67 -1.4
2,344,174 - CSW01_11010 0.69 -1.6
2,344,174 - CSW01_11010 0.69 +0.2
2,344,174 - CSW01_11010 0.69 -1.3
2,344,181 + CSW01_11010 0.70 -0.3
2,344,181 + CSW01_11010 0.70 -0.3
2,344,189 - CSW01_11010 0.71 +0.9
2,344,208 + CSW01_11010 0.74 -1.5
2,344,216 - CSW01_11010 0.76 +0.3
2,344,244 - CSW01_11010 0.80 +1.4
2,344,244 - CSW01_11010 0.80 -0.7
2,344,261 - CSW01_11010 0.83 +1.9
2,344,438 - CSW01_11015 0.41 +0.3
2,344,458 + CSW01_11015 0.50 +0.2
2,344,458 + CSW01_11015 0.50 -0.3
2,344,458 + CSW01_11015 0.50 -0.7
2,344,458 + CSW01_11015 0.50 -0.1
2,344,458 + CSW01_11015 0.50 -1.7
2,344,458 + CSW01_11015 0.50 +0.1
2,344,463 + CSW01_11015 0.52 +0.2
2,344,466 - CSW01_11015 0.53 -0.9
2,344,466 - CSW01_11015 0.53 -0.2
2,344,466 - CSW01_11015 0.53 +1.7
2,344,466 - CSW01_11015 0.53 -0.6
2,344,466 - CSW01_11015 0.53 -0.8
2,344,508 + CSW01_11015 0.71 -0.8
2,344,561 + -0.0
2,344,608 - CSW01_11020 0.19 +0.7
2,344,608 - CSW01_11020 0.19 +1.3
2,344,608 - CSW01_11020 0.19 +0.8
2,344,608 - CSW01_11020 0.19 +0.4
2,344,614 + CSW01_11020 0.21 +0.2
2,344,658 + CSW01_11020 0.42 -0.3
2,344,703 + CSW01_11020 0.64 +0.3
2,344,721 - CSW01_11020 0.72 -0.5
2,344,811 + +0.4
2,344,839 + CSW01_11025 0.10 +1.3
2,344,847 - CSW01_11025 0.12 +0.3
2,344,847 - CSW01_11025 0.12 -0.2
2,344,955 + CSW01_11025 0.35 -0.7
2,345,068 + CSW01_11025 0.60 -0.5
2,345,076 - CSW01_11025 0.62 +0.8
2,345,146 - CSW01_11025 0.77 -0.7
2,345,154 - CSW01_11025 0.79 +0.4
2,345,257 - -0.8
2,345,310 + -0.5
2,345,316 - -3.0
2,345,326 - +0.2

Or see this region's nucleotide sequence