Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09735

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
2,094,970	-		CSW01_09730	0.42	-3.1
2,094,976	+		CSW01_09730	0.42	-0.4
2,095,051	+		CSW01_09730	0.48	+1.0
2,095,118	+		CSW01_09730	0.52	+0.5
2,095,126	-		CSW01_09730	0.53	+0.3
2,095,166	-		CSW01_09730	0.55	-0.2
2,095,189	-		CSW01_09730	0.57	+0.3
2,095,209	-		CSW01_09730	0.58	-1.3
2,095,214	-		CSW01_09730	0.59	+1.0
2,095,233	+		CSW01_09730	0.60	+1.2
2,095,266	-		CSW01_09730	0.62	+2.2
2,095,266	-		CSW01_09730	0.62	-0.0
2,095,280	+		CSW01_09730	0.63	-0.4
2,095,355	+		CSW01_09730	0.68	-0.4
2,095,363	-		CSW01_09730	0.69	+0.0
2,095,367	-		CSW01_09730	0.69	+0.0
2,095,408	+		CSW01_09730	0.72	-1.2
2,095,419	+		CSW01_09730	0.73	+0.3
2,095,419	+		CSW01_09730	0.73	+0.5
2,095,419	+		CSW01_09730	0.73	-0.1
2,095,427	-		CSW01_09730	0.73	-0.1
2,095,483	+		CSW01_09730	0.77	-2.2
2,095,488	+		CSW01_09730	0.77	-0.7
2,095,494	+		CSW01_09730	0.78	+0.5
2,095,496	-		CSW01_09730	0.78	-0.7
2,095,502	-		CSW01_09730	0.78	+0.4
2,095,559	-		CSW01_09730	0.82	+0.5
2,095,571	-		CSW01_09730	0.83	-1.7
2,095,571	-		CSW01_09730	0.83	+0.5
2,095,646	-		CSW01_09730	0.88	+0.3
2,095,671	+				-4.1
2,095,671	+				-0.4
2,095,696	-				-0.1
2,095,713	+				-0.4
2,095,745	+				+0.6
2,095,763	+				-0.2
2,095,763	+				+0.9
2,095,841	-				-1.2
2,095,858	-				+0.6
2,095,922	+				-0.7
2,095,941	+				+0.4
2,095,941	-				+0.1
2,095,945	+				-0.7
2,095,945	+				+0.7
2,095,961	+				-0.2
2,096,197	-		CSW01_09735	0.27	+0.6
2,096,226	+		CSW01_09735	0.30	-0.8
2,096,247	+		CSW01_09735	0.32	-0.7
2,096,278	-		CSW01_09735	0.35	-3.4
2,096,278	-		CSW01_09735	0.35	-0.5
2,096,280	+		CSW01_09735	0.36	+0.1
2,096,288	-		CSW01_09735	0.37	+0.7
2,096,334	-		CSW01_09735	0.42	+0.8
2,096,387	-		CSW01_09735	0.47	-0.4
2,096,475	+		CSW01_09735	0.57	+0.2
2,096,495	+		CSW01_09735	0.59	+1.4
2,096,505	+		CSW01_09735	0.60	-0.5
2,096,581	+		CSW01_09735	0.68	+1.0
2,096,599	-		CSW01_09735	0.70	-0.6
2,096,645	-		CSW01_09735	0.75	+1.6
2,096,645	-		CSW01_09735	0.75	+0.5
2,096,650	-		CSW01_09735	0.75	-0.5
2,096,708	-		CSW01_09735	0.82	+0.6
2,096,720	+		CSW01_09735	0.83	+0.6
2,096,722	+		CSW01_09735	0.83	-0.4
2,096,727	+		CSW01_09735	0.84	-0.9
2,096,728	-		CSW01_09735	0.84	+0.2
2,096,728	-		CSW01_09735	0.84	-1.4
2,096,728	-		CSW01_09735	0.84	-0.2
2,096,730	+		CSW01_09735	0.84	-0.6
2,096,739	+		CSW01_09735	0.85	-1.2
2,096,739	+		CSW01_09735	0.85	+0.0
2,096,739	+		CSW01_09735	0.85	+0.7
2,096,739	+		CSW01_09735	0.85	+0.5
2,096,739	+		CSW01_09735	0.85	-0.2
2,096,739	+		CSW01_09735	0.85	-2.3
2,096,739	+		CSW01_09735	0.85	+0.1
2,096,739	+		CSW01_09735	0.85	+1.8
2,096,739	+		CSW01_09735	0.85	+0.3
2,096,739	+		CSW01_09735	0.85	-0.9
2,096,739	+		CSW01_09735	0.85	+0.2
2,096,739	+		CSW01_09735	0.85	+1.0
2,096,739	+		CSW01_09735	0.85	+0.2
2,096,739	+		CSW01_09735	0.85	-1.1
2,096,740	-		CSW01_09735	0.85	+0.1
2,096,746	-		CSW01_09735	0.86	+1.7
2,096,747	-		CSW01_09735	0.86	+0.6
2,096,747	-		CSW01_09735	0.86	+0.1
2,096,747	-		CSW01_09735	0.86	+0.4
2,096,747	-		CSW01_09735	0.86	+0.6
2,096,747	-		CSW01_09735	0.86	-0.4
2,096,747	-		CSW01_09735	0.86	+2.0
2,096,747	-		CSW01_09735	0.86	+0.2
2,096,747	-		CSW01_09735	0.86	+1.3
2,096,747	-		CSW01_09735	0.86	+0.7
2,096,747	-		CSW01_09735	0.86	+0.3
2,096,747	-		CSW01_09735	0.86	+0.4
2,096,747	-		CSW01_09735	0.86	+0.1
2,096,747	-		CSW01_09735	0.86	+0.1
2,096,747	-		CSW01_09735	0.86	-2.8
2,096,747	-		CSW01_09735	0.86	+0.8
2,096,747	-		CSW01_09735	0.86	+0.5
2,096,747	-		CSW01_09735	0.86	+0.1
2,096,747	-		CSW01_09735	0.86	-0.5
2,096,747	-		CSW01_09735	0.86	+0.4
2,096,747	-		CSW01_09735	0.86	+1.1
2,096,749	+		CSW01_09735	0.86	+0.1
2,096,754	+		CSW01_09735	0.87	+0.3
2,096,755	+		CSW01_09735	0.87	-0.1
2,096,755	+		CSW01_09735	0.87	+0.3
2,096,756	+		CSW01_09735	0.87	+0.6
2,096,762	-		CSW01_09735	0.88	+0.3
2,096,763	-		CSW01_09735	0.88	-0.7
2,096,763	-		CSW01_09735	0.88	+0.2
2,096,791	-				+1.5
2,096,837	-				+2.6
2,096,837	-				-0.1
2,096,888	+				-0.7
2,096,888	+				+0.6
2,096,896	-				+0.9
2,096,901	-				+0.6
2,097,025	+				+0.5
2,097,030	+				+0.1
2,097,030	+				+0.1
2,097,033	-				+1.0
2,097,038	-				+0.2
2,097,045	+				-0.0
2,097,045	+				-0.4
2,097,047	+				-0.1
2,097,053	-				+0.3
2,097,053	-				-0.1
2,097,074	+		CSW01_09740	0.20	+1.6
2,097,090	-		CSW01_09740	0.28	+0.5
2,097,153	-		CSW01_09740	0.61	-0.3
2,097,153	-		CSW01_09740	0.61	+0.6
2,097,169	+		CSW01_09740	0.69	+0.7
2,097,230	-				+0.8
2,097,313	-				-0.7
2,097,359	+				+0.4
2,097,392	+		CSW01_09745	0.11	+0.0
2,097,392	+		CSW01_09745	0.11	-0.3
2,097,392	+		CSW01_09745	0.11	-1.3
2,097,392	+		CSW01_09745	0.11	+0.0
2,097,392	+		CSW01_09745	0.11	-1.0
2,097,392	+		CSW01_09745	0.11	+0.6
2,097,400	-		CSW01_09745	0.11	-0.2
2,097,400	-		CSW01_09745	0.11	+0.3
2,097,400	-		CSW01_09745	0.11	-0.4
2,097,400	-		CSW01_09745	0.11	+0.8
2,097,405	+		CSW01_09745	0.11	+0.5
2,097,407	-		CSW01_09745	0.11	+0.5
2,097,460	+		CSW01_09745	0.14	+0.3
2,097,460	-		CSW01_09745	0.14	+0.3
2,097,461	+		CSW01_09745	0.14	-0.2
2,097,468	-		CSW01_09745	0.15	-0.3
2,097,468	-		CSW01_09745	0.15	+1.6
2,097,468	-		CSW01_09745	0.15	-1.2
2,097,468	-		CSW01_09745	0.15	-0.6
2,097,468	-		CSW01_09745	0.15	+0.6
2,097,482	+		CSW01_09745	0.16	-0.7
2,097,482	+		CSW01_09745	0.16	+0.2
2,097,482	+		CSW01_09745	0.16	+1.2
2,097,490	-		CSW01_09745	0.16	+0.9
2,097,490	-		CSW01_09745	0.16	-1.8
2,097,524	+		CSW01_09745	0.18	-0.7
2,097,532	-		CSW01_09745	0.18	+0.4
2,097,540	+		CSW01_09745	0.19	+1.2
2,097,540	+		CSW01_09745	0.19	+0.7
2,097,540	+		CSW01_09745	0.19	+2.1
2,097,540	+		CSW01_09745	0.19	+0.6
2,097,548	-		CSW01_09745	0.19	+0.8
2,097,548	-		CSW01_09745	0.19	+2.5
2,097,550	+		CSW01_09745	0.19	-1.1
2,097,564	+		CSW01_09745	0.20	+0.1
2,097,564	+		CSW01_09745	0.20	+1.3
2,097,564	+		CSW01_09745	0.20	-0.2
2,097,574	+		CSW01_09745	0.21	+0.0
2,097,582	-		CSW01_09745	0.21	-0.6
2,097,686	-		CSW01_09745	0.27	-0.1
2,097,691	+		CSW01_09745	0.27	-0.1
2,097,699	+		CSW01_09745	0.27	+0.4
2,097,699	-		CSW01_09745	0.27	-1.3
2,097,699	-		CSW01_09745	0.27	+0.3
2,097,703	+		CSW01_09745	0.28	-0.2
2,097,706	-		CSW01_09745	0.28	-1.7
2,097,751	+		CSW01_09745	0.30	+0.6
2,097,819	+		CSW01_09745	0.34	-0.7
2,097,848	-		CSW01_09745	0.36	+0.0
2,097,852	+		CSW01_09745	0.36	-1.2
2,097,860	-		CSW01_09745	0.36	-0.1
2,097,869	+		CSW01_09745	0.37	-1.4
2,097,877	-		CSW01_09745	0.37	+0.3