Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09310

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09295 and CSW01_09300 overlap by 16 nucleotidesCSW01_09300 and CSW01_09305 are separated by 0 nucleotidesCSW01_09305 and CSW01_09310 are separated by 23 nucleotidesCSW01_09310 and CSW01_09315 are separated by 197 nucleotides CSW01_09295: CSW01_09295 - hypothetical protein, at 1,995,147 to 1,995,926 _09295 CSW01_09300: CSW01_09300 - prepilin peptidase, at 1,995,911 to 1,996,474 _09300 CSW01_09305: CSW01_09305 - primosomal protein, at 1,996,475 to 1,996,687 _09305 CSW01_09310: CSW01_09310 - methyl-accepting chemotaxis protein, at 1,996,711 to 1,998,831 _09310 CSW01_09315: CSW01_09315 - exodeoxyribonuclease III, at 1,999,029 to 1,999,835 _09315 Position (kb) 1996 1997 1998 1999Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1995.739 kb on + strand, within CSW01_09295at 1995.747 kb on - strand, within CSW01_09295at 1995.752 kb on + strand, within CSW01_09295at 1995.820 kb on - strand, within CSW01_09295at 1995.830 kb on - strand, within CSW01_09295at 1995.854 kb on - strandat 1995.854 kb on - strandat 1996.015 kb on - strand, within CSW01_09300at 1996.031 kb on + strand, within CSW01_09300at 1996.054 kb on + strand, within CSW01_09300at 1996.062 kb on - strand, within CSW01_09300at 1996.097 kb on + strand, within CSW01_09300at 1996.105 kb on - strand, within CSW01_09300at 1996.147 kb on + strand, within CSW01_09300at 1996.155 kb on - strand, within CSW01_09300at 1996.182 kb on - strand, within CSW01_09300at 1996.184 kb on - strand, within CSW01_09300at 1996.313 kb on + strand, within CSW01_09300at 1996.382 kb on + strand, within CSW01_09300at 1996.390 kb on - strand, within CSW01_09300at 1996.514 kb on - strand, within CSW01_09305at 1996.672 kb on + strandat 1996.738 kb on + strandat 1996.932 kb on + strand, within CSW01_09310at 1996.937 kb on + strand, within CSW01_09310at 1996.945 kb on - strand, within CSW01_09310at 1996.955 kb on - strand, within CSW01_09310at 1996.973 kb on + strand, within CSW01_09310at 1996.973 kb on + strand, within CSW01_09310at 1996.973 kb on + strand, within CSW01_09310at 1996.973 kb on + strand, within CSW01_09310at 1996.973 kb on + strand, within CSW01_09310at 1996.981 kb on - strand, within CSW01_09310at 1996.981 kb on - strand, within CSW01_09310at 1996.981 kb on - strand, within CSW01_09310at 1996.981 kb on - strand, within CSW01_09310at 1996.981 kb on - strand, within CSW01_09310at 1996.999 kb on + strand, within CSW01_09310at 1997.234 kb on + strand, within CSW01_09310at 1997.234 kb on + strand, within CSW01_09310at 1997.309 kb on + strand, within CSW01_09310at 1997.315 kb on - strand, within CSW01_09310at 1997.325 kb on + strand, within CSW01_09310at 1997.408 kb on - strand, within CSW01_09310at 1997.450 kb on + strand, within CSW01_09310at 1997.495 kb on + strand, within CSW01_09310at 1997.495 kb on + strand, within CSW01_09310at 1997.505 kb on + strand, within CSW01_09310at 1997.513 kb on - strand, within CSW01_09310at 1997.567 kb on - strand, within CSW01_09310at 1997.588 kb on - strand, within CSW01_09310at 1997.639 kb on + strand, within CSW01_09310at 1997.655 kb on - strand, within CSW01_09310at 1997.655 kb on - strand, within CSW01_09310at 1997.704 kb on - strand, within CSW01_09310at 1997.715 kb on + strand, within CSW01_09310at 1997.723 kb on - strand, within CSW01_09310at 1997.828 kb on - strand, within CSW01_09310at 1997.936 kb on + strand, within CSW01_09310at 1997.936 kb on + strand, within CSW01_09310at 1997.944 kb on - strand, within CSW01_09310at 1997.958 kb on + strand, within CSW01_09310at 1997.970 kb on + strand, within CSW01_09310at 1998.081 kb on - strand, within CSW01_09310at 1998.138 kb on + strand, within CSW01_09310at 1998.240 kb on + strand, within CSW01_09310at 1998.240 kb on + strand, within CSW01_09310at 1998.240 kb on + strand, within CSW01_09310at 1998.240 kb on + strand, within CSW01_09310at 1998.240 kb on + strand, within CSW01_09310at 1998.240 kb on + strand, within CSW01_09310at 1998.248 kb on - strand, within CSW01_09310at 1998.258 kb on - strand, within CSW01_09310at 1998.441 kb on - strand, within CSW01_09310at 1998.604 kb on + strand, within CSW01_09310at 1998.612 kb on - strand, within CSW01_09310at 1998.693 kb on + strandat 1998.701 kb on - strandat 1998.802 kb on + strandat 1998.837 kb on + strandat 1998.867 kb on - strandat 1998.867 kb on - strandat 1998.947 kb on + strandat 1999.002 kb on + strandat 1999.021 kb on - strandat 1999.086 kb on - strandat 1999.108 kb on - strandat 1999.264 kb on - strand, within CSW01_09315at 1999.320 kb on + strand, within CSW01_09315at 1999.453 kb on + strand, within CSW01_09315at 1999.562 kb on - strand, within CSW01_09315at 1999.687 kb on + strand, within CSW01_09315at 1999.695 kb on - strand, within CSW01_09315at 1999.715 kb on - strand, within CSW01_09315at 1999.732 kb on + strand, within CSW01_09315at 1999.740 kb on - strand, within CSW01_09315at 1999.740 kb on - strand, within CSW01_09315at 1999.798 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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1,995,739 + CSW01_09295 0.76 +0.1
1,995,747 - CSW01_09295 0.77 -0.6
1,995,752 + CSW01_09295 0.78 -0.1
1,995,820 - CSW01_09295 0.86 +2.5
1,995,830 - CSW01_09295 0.88 +1.8
1,995,854 - -0.7
1,995,854 - +0.1
1,996,015 - CSW01_09300 0.18 -0.1
1,996,031 + CSW01_09300 0.21 +0.5
1,996,054 + CSW01_09300 0.25 -0.2
1,996,062 - CSW01_09300 0.27 -0.1
1,996,097 + CSW01_09300 0.33 -1.1
1,996,105 - CSW01_09300 0.34 +1.2
1,996,147 + CSW01_09300 0.42 +1.0
1,996,155 - CSW01_09300 0.43 -0.2
1,996,182 - CSW01_09300 0.48 -0.8
1,996,184 - CSW01_09300 0.48 +0.4
1,996,313 + CSW01_09300 0.71 -1.9
1,996,382 + CSW01_09300 0.84 -0.9
1,996,390 - CSW01_09300 0.85 +0.2
1,996,514 - CSW01_09305 0.18 +0.4
1,996,672 + +0.9
1,996,738 + +0.3
1,996,932 + CSW01_09310 0.10 -0.9
1,996,937 + CSW01_09310 0.11 +0.2
1,996,945 - CSW01_09310 0.11 +0.1
1,996,955 - CSW01_09310 0.12 -1.0
1,996,973 + CSW01_09310 0.12 +0.3
1,996,973 + CSW01_09310 0.12 +0.9
1,996,973 + CSW01_09310 0.12 +0.7
1,996,973 + CSW01_09310 0.12 +1.0
1,996,973 + CSW01_09310 0.12 -0.2
1,996,981 - CSW01_09310 0.13 -0.7
1,996,981 - CSW01_09310 0.13 -0.3
1,996,981 - CSW01_09310 0.13 +0.2
1,996,981 - CSW01_09310 0.13 -0.7
1,996,981 - CSW01_09310 0.13 -0.2
1,996,999 + CSW01_09310 0.14 -0.8
1,997,234 + CSW01_09310 0.25 +0.3
1,997,234 + CSW01_09310 0.25 +0.3
1,997,309 + CSW01_09310 0.28 +2.2
1,997,315 - CSW01_09310 0.28 -1.2
1,997,325 + CSW01_09310 0.29 -0.3
1,997,408 - CSW01_09310 0.33 -2.5
1,997,450 + CSW01_09310 0.35 +0.6
1,997,495 + CSW01_09310 0.37 +0.2
1,997,495 + CSW01_09310 0.37 -0.9
1,997,505 + CSW01_09310 0.37 -0.6
1,997,513 - CSW01_09310 0.38 -0.2
1,997,567 - CSW01_09310 0.40 -0.7
1,997,588 - CSW01_09310 0.41 -1.4
1,997,639 + CSW01_09310 0.44 -0.3
1,997,655 - CSW01_09310 0.45 +0.7
1,997,655 - CSW01_09310 0.45 -0.6
1,997,704 - CSW01_09310 0.47 -0.1
1,997,715 + CSW01_09310 0.47 -0.2
1,997,723 - CSW01_09310 0.48 +0.7
1,997,828 - CSW01_09310 0.53 -0.8
1,997,936 + CSW01_09310 0.58 -0.7
1,997,936 + CSW01_09310 0.58 -0.8
1,997,944 - CSW01_09310 0.58 +0.1
1,997,958 + CSW01_09310 0.59 -0.1
1,997,970 + CSW01_09310 0.59 -0.4
1,998,081 - CSW01_09310 0.65 -0.1
1,998,138 + CSW01_09310 0.67 -0.8
1,998,240 + CSW01_09310 0.72 -0.4
1,998,240 + CSW01_09310 0.72 -0.5
1,998,240 + CSW01_09310 0.72 -2.7
1,998,240 + CSW01_09310 0.72 +0.3
1,998,240 + CSW01_09310 0.72 -2.1
1,998,240 + CSW01_09310 0.72 -1.3
1,998,248 - CSW01_09310 0.72 +1.1
1,998,258 - CSW01_09310 0.73 -0.7
1,998,441 - CSW01_09310 0.82 +0.7
1,998,604 + CSW01_09310 0.89 +0.3
1,998,612 - CSW01_09310 0.90 -1.1
1,998,693 + +0.5
1,998,701 - +1.0
1,998,802 + +0.7
1,998,837 + -3.7
1,998,867 - +0.6
1,998,867 - -0.4
1,998,947 + +0.2
1,999,002 + -0.1
1,999,021 - -0.4
1,999,086 - +0.3
1,999,108 - +0.1
1,999,264 - CSW01_09315 0.29 -0.3
1,999,320 + CSW01_09315 0.36 +0.3
1,999,453 + CSW01_09315 0.53 -0.0
1,999,562 - CSW01_09315 0.66 +0.7
1,999,687 + CSW01_09315 0.82 +0.6
1,999,695 - CSW01_09315 0.83 +0.7
1,999,715 - CSW01_09315 0.85 +1.7
1,999,732 + CSW01_09315 0.87 -0.1
1,999,740 - CSW01_09315 0.88 -1.2
1,999,740 - CSW01_09315 0.88 +0.3
1,999,798 - -3.0

Or see this region's nucleotide sequence