Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09095

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09085 and CSW01_09090 overlap by 9 nucleotidesCSW01_09090 and CSW01_09095 are separated by 123 nucleotidesCSW01_09095 and CSW01_09100 are separated by 116 nucleotides CSW01_09085: CSW01_09085 - DUF2986 domain-containing protein, at 1,952,223 to 1,952,426 _09085 CSW01_09090: CSW01_09090 - NYN domain-containing protein, at 1,952,418 to 1,952,891 _09090 CSW01_09095: CSW01_09095 - thiol-disulfide oxidoreductase DCC family protein, at 1,953,015 to 1,953,434 _09095 CSW01_09100: CSW01_09100 - cryptochrome DASH, at 1,953,551 to 1,954,936 _09100 Position (kb) 1953 1954Strain fitness (log2 ratio) -2 -1 0 1 2at 1952.110 kb on - strandat 1952.214 kb on - strandat 1952.330 kb on + strand, within CSW01_09085at 1952.536 kb on - strand, within CSW01_09090at 1952.652 kb on + strand, within CSW01_09090at 1952.666 kb on + strand, within CSW01_09090at 1952.687 kb on + strand, within CSW01_09090at 1952.687 kb on + strand, within CSW01_09090at 1952.687 kb on + strand, within CSW01_09090at 1952.687 kb on + strand, within CSW01_09090at 1952.695 kb on - strand, within CSW01_09090at 1952.764 kb on + strand, within CSW01_09090at 1952.845 kb on + strandat 1952.915 kb on + strandat 1952.922 kb on + strandat 1952.923 kb on - strandat 1952.930 kb on - strandat 1953.053 kb on + strandat 1953.061 kb on - strand, within CSW01_09095at 1953.061 kb on - strand, within CSW01_09095at 1953.191 kb on + strand, within CSW01_09095at 1953.199 kb on - strand, within CSW01_09095at 1953.199 kb on - strand, within CSW01_09095at 1953.199 kb on - strand, within CSW01_09095at 1953.209 kb on - strand, within CSW01_09095at 1953.221 kb on + strand, within CSW01_09095at 1953.221 kb on + strand, within CSW01_09095at 1953.320 kb on - strand, within CSW01_09095at 1953.343 kb on + strand, within CSW01_09095at 1953.353 kb on + strand, within CSW01_09095at 1953.353 kb on + strand, within CSW01_09095at 1953.355 kb on + strand, within CSW01_09095at 1953.358 kb on + strand, within CSW01_09095at 1953.518 kb on + strandat 1953.631 kb on - strandat 1953.788 kb on - strand, within CSW01_09100at 1953.795 kb on - strand, within CSW01_09100at 1953.821 kb on - strand, within CSW01_09100at 1953.826 kb on - strand, within CSW01_09100at 1953.884 kb on + strand, within CSW01_09100at 1953.887 kb on - strand, within CSW01_09100at 1953.919 kb on + strand, within CSW01_09100at 1953.927 kb on - strand, within CSW01_09100at 1953.947 kb on + strand, within CSW01_09100at 1953.950 kb on + strand, within CSW01_09100at 1953.955 kb on - strand, within CSW01_09100at 1953.974 kb on + strand, within CSW01_09100at 1954.088 kb on + strand, within CSW01_09100at 1954.091 kb on - strand, within CSW01_09100at 1954.096 kb on - strand, within CSW01_09100at 1954.096 kb on - strand, within CSW01_09100at 1954.213 kb on + strand, within CSW01_09100at 1954.240 kb on - strand, within CSW01_09100at 1954.247 kb on + strand, within CSW01_09100at 1954.339 kb on - strand, within CSW01_09100

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
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1,952,110 - +0.0
1,952,214 - -0.9
1,952,330 + CSW01_09085 0.52 +0.2
1,952,536 - CSW01_09090 0.25 +0.3
1,952,652 + CSW01_09090 0.49 -1.5
1,952,666 + CSW01_09090 0.52 -0.6
1,952,687 + CSW01_09090 0.57 +0.6
1,952,687 + CSW01_09090 0.57 -2.3
1,952,687 + CSW01_09090 0.57 +0.0
1,952,687 + CSW01_09090 0.57 +0.2
1,952,695 - CSW01_09090 0.58 +0.1
1,952,764 + CSW01_09090 0.73 -0.2
1,952,845 + +0.2
1,952,915 + -0.6
1,952,922 + -0.6
1,952,923 - -0.5
1,952,930 - +1.9
1,953,053 + +0.1
1,953,061 - CSW01_09095 0.11 +0.7
1,953,061 - CSW01_09095 0.11 +0.6
1,953,191 + CSW01_09095 0.42 +1.9
1,953,199 - CSW01_09095 0.44 -0.3
1,953,199 - CSW01_09095 0.44 +0.2
1,953,199 - CSW01_09095 0.44 +0.0
1,953,209 - CSW01_09095 0.46 +0.6
1,953,221 + CSW01_09095 0.49 -1.1
1,953,221 + CSW01_09095 0.49 +1.6
1,953,320 - CSW01_09095 0.73 +0.1
1,953,343 + CSW01_09095 0.78 +0.3
1,953,353 + CSW01_09095 0.80 -0.1
1,953,353 + CSW01_09095 0.80 +0.3
1,953,355 + CSW01_09095 0.81 -0.1
1,953,358 + CSW01_09095 0.82 -0.1
1,953,518 + -0.1
1,953,631 - -0.5
1,953,788 - CSW01_09100 0.17 +0.3
1,953,795 - CSW01_09100 0.18 +0.5
1,953,821 - CSW01_09100 0.19 +0.7
1,953,826 - CSW01_09100 0.20 -0.3
1,953,884 + CSW01_09100 0.24 -0.6
1,953,887 - CSW01_09100 0.24 -1.2
1,953,919 + CSW01_09100 0.27 +0.3
1,953,927 - CSW01_09100 0.27 +1.1
1,953,947 + CSW01_09100 0.29 -1.8
1,953,950 + CSW01_09100 0.29 +0.3
1,953,955 - CSW01_09100 0.29 -0.7
1,953,974 + CSW01_09100 0.31 +0.3
1,954,088 + CSW01_09100 0.39 +0.8
1,954,091 - CSW01_09100 0.39 -0.2
1,954,096 - CSW01_09100 0.39 +0.4
1,954,096 - CSW01_09100 0.39 -1.0
1,954,213 + CSW01_09100 0.48 +2.4
1,954,240 - CSW01_09100 0.50 -2.5
1,954,247 + CSW01_09100 0.50 -0.6
1,954,339 - CSW01_09100 0.57 -0.1

Or see this region's nucleotide sequence