Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08410

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
1,803,667	+		CSW01_08400	0.88	+1.3
1,803,668	+		CSW01_08400	0.88	-0.9
1,803,712	+				+1.1
1,803,734	+				+0.3
1,803,734	+				+2.2
1,803,895	+				+0.6
1,803,903	-				+0.3
1,803,972	+		CSW01_08405	0.13	-0.5
1,804,070	+		CSW01_08405	0.30	-0.1
1,804,078	-		CSW01_08405	0.31	-1.3
1,804,152	+		CSW01_08405	0.44	-1.1
1,804,210	+		CSW01_08405	0.54	-0.3
1,804,218	-		CSW01_08405	0.55	+1.0
1,804,218	-		CSW01_08405	0.55	-1.0
1,804,230	-		CSW01_08405	0.57	+0.3
1,804,256	+		CSW01_08405	0.62	+0.3
1,804,256	+		CSW01_08405	0.62	+0.9
1,804,256	+		CSW01_08405	0.62	-0.8
1,804,256	+		CSW01_08405	0.62	+1.3
1,804,256	+		CSW01_08405	0.62	+0.7
1,804,256	+		CSW01_08405	0.62	-1.1
1,804,256	+		CSW01_08405	0.62	+0.1
1,804,264	-		CSW01_08405	0.63	-2.5
1,804,264	-		CSW01_08405	0.63	-0.4
1,804,264	-		CSW01_08405	0.63	-1.5
1,804,264	-		CSW01_08405	0.63	+0.1
1,804,264	-		CSW01_08405	0.63	+0.3
1,804,264	-		CSW01_08405	0.63	+0.5
1,804,264	-		CSW01_08405	0.63	+2.1
1,804,264	-		CSW01_08405	0.63	+0.1
1,804,264	-		CSW01_08405	0.63	+2.2
1,804,293	+		CSW01_08405	0.68	-0.2
1,804,329	+		CSW01_08405	0.74	-0.2
1,804,393	+		CSW01_08405	0.85	-2.0
1,804,393	+		CSW01_08405	0.85	-0.0
1,804,393	+		CSW01_08405	0.85	-0.8
1,804,393	+		CSW01_08405	0.85	-0.2
1,804,401	-		CSW01_08405	0.87	-0.1
1,804,401	-		CSW01_08405	0.87	+0.2
1,804,401	-		CSW01_08405	0.87	+0.1
1,804,401	-		CSW01_08405	0.87	+0.1
1,804,406	-		CSW01_08405	0.87	-0.6
1,804,406	-		CSW01_08405	0.87	+0.3
1,804,453	+				-1.1
1,804,606	-				+0.1
1,804,611	-				-1.1
1,804,648	-				+0.1
1,804,658	+				-0.4
1,804,711	+				-0.8
1,804,726	+				-0.9
1,804,751	+				-1.8
1,804,759	-				-0.3
1,804,995	+		CSW01_08410	0.14	-0.6
1,805,066	+		CSW01_08410	0.16	-0.9
1,805,066	+		CSW01_08410	0.16	-1.4
1,805,072	-		CSW01_08410	0.16	+0.1
1,805,129	-		CSW01_08410	0.18	+0.3
1,805,140	+		CSW01_08410	0.18	-0.2
1,805,146	+		CSW01_08410	0.19	-2.4
1,805,148	-		CSW01_08410	0.19	-2.1
1,805,148	-		CSW01_08410	0.19	-0.6
1,805,233	-		CSW01_08410	0.21	-0.3
1,805,290	+		CSW01_08410	0.23	+0.8
1,805,298	-		CSW01_08410	0.24	+1.0
1,805,368	+		CSW01_08410	0.26	-0.9
1,805,395	+		CSW01_08410	0.27	-0.2
1,805,403	-		CSW01_08410	0.27	+2.0
1,805,558	-		CSW01_08410	0.32	+0.2
1,805,585	+		CSW01_08410	0.33	+0.4
1,805,588	-		CSW01_08410	0.33	-0.3
1,805,590	+		CSW01_08410	0.33	-0.7
1,805,593	-		CSW01_08410	0.33	-0.1
1,805,593	-		CSW01_08410	0.33	-0.8
1,805,599	+		CSW01_08410	0.33	+1.0
1,805,742	+		CSW01_08410	0.38	+0.0
1,805,793	+		CSW01_08410	0.39	+0.6
1,805,813	+		CSW01_08410	0.40	-0.4
1,805,819	+		CSW01_08410	0.40	+0.6
1,805,821	-		CSW01_08410	0.40	+0.0
1,806,018	-		CSW01_08410	0.47	+0.4
1,806,092	+		CSW01_08410	0.49	+0.9
1,806,121	-		CSW01_08410	0.50	+1.0
1,806,232	+		CSW01_08410	0.54	+0.3
1,806,242	+		CSW01_08410	0.54	-0.2
1,806,242	+		CSW01_08410	0.54	-0.5
1,806,242	+		CSW01_08410	0.54	+0.1
1,806,242	+		CSW01_08410	0.54	+1.3
1,806,242	+		CSW01_08410	0.54	-0.0
1,806,242	+		CSW01_08410	0.54	+0.6
1,806,250	-		CSW01_08410	0.54	-1.9
1,806,250	-		CSW01_08410	0.54	-2.7
1,806,250	-		CSW01_08410	0.54	-0.0
1,806,443	-		CSW01_08410	0.60	-0.2
1,806,443	-		CSW01_08410	0.60	+1.2
1,806,454	+		CSW01_08410	0.61	-1.2
1,806,503	+		CSW01_08410	0.62	-0.6
1,806,511	-		CSW01_08410	0.62	+0.7
1,806,511	-		CSW01_08410	0.62	+0.2
1,806,531	-		CSW01_08410	0.63	-2.7
1,806,541	+		CSW01_08410	0.63	-0.1
1,806,650	+		CSW01_08410	0.67	+0.1
1,806,650	+		CSW01_08410	0.67	-0.5
1,806,650	+		CSW01_08410	0.67	-0.5
1,806,658	-		CSW01_08410	0.67	+1.1
1,806,747	-		CSW01_08410	0.70	+0.1
1,806,794	+		CSW01_08410	0.72	-1.4
1,806,860	-		CSW01_08410	0.74	+0.0
1,806,865	-		CSW01_08410	0.74	-1.1
1,806,886	+		CSW01_08410	0.75	+0.6
1,806,894	-		CSW01_08410	0.75	+2.2
1,806,946	+		CSW01_08410	0.76	-1.3
1,806,946	+		CSW01_08410	0.76	-2.0
1,806,954	-		CSW01_08410	0.77	+0.0
1,807,043	-		CSW01_08410	0.80	-2.5
1,807,048	-		CSW01_08410	0.80	+0.2
1,807,099	-		CSW01_08410	0.81	-0.3
1,807,099	-		CSW01_08410	0.81	+0.2
1,807,162	+		CSW01_08410	0.83	-0.1
1,807,177	-		CSW01_08410	0.84	-0.1
1,807,177	-		CSW01_08410	0.84	-0.1
1,807,459	-				-0.2
1,807,468	+				-0.1
1,807,476	-				+1.0
1,807,625	-				-0.5
1,807,673	+				-1.8
1,807,681	-				+0.6
1,807,681	-				-0.5
1,807,681	-				-1.7
1,807,681	-				+0.4
1,807,688	-				-0.5
1,807,688	-				-0.7
1,807,758	+				+0.8
1,807,766	-				-2.7
1,807,766	-				-0.4
1,807,766	-				-0.2
1,807,766	-				+1.2
1,807,911	+		CSW01_08415	0.23	-0.3
1,807,924	-		CSW01_08415	0.24	+2.2
1,807,929	+		CSW01_08415	0.25	+1.1
1,807,936	-		CSW01_08415	0.25	-0.9
1,807,947	+		CSW01_08415	0.26	-2.1
1,807,987	+		CSW01_08415	0.30	-0.2
1,807,987	+		CSW01_08415	0.30	+1.3
1,807,987	+		CSW01_08415	0.30	-0.3
1,807,987	+		CSW01_08415	0.30	-0.7
1,807,995	-		CSW01_08415	0.31	+0.1
1,807,995	-		CSW01_08415	0.31	-1.6
1,808,036	+		CSW01_08415	0.34	-0.5
1,808,039	-		CSW01_08415	0.35	-0.1
1,808,065	+		CSW01_08415	0.37	+0.1
1,808,098	+		CSW01_08415	0.40	-0.2
1,808,106	-		CSW01_08415	0.41	-0.2
1,808,106	-		CSW01_08415	0.41	-0.6
1,808,115	+		CSW01_08415	0.41	+0.3
1,808,221	+		CSW01_08415	0.51	+0.8
1,808,229	-		CSW01_08415	0.52	+1.6
1,808,231	+		CSW01_08415	0.52	+0.4
1,808,476	-		CSW01_08415	0.74	-0.8
1,808,490	+		CSW01_08415	0.75	+0.2