Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07275

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
1,547,876	-				+0.4
1,547,878	+				+0.6
1,547,966	+				-0.7
1,547,967	+				-2.1
1,548,082	+		CSW01_07265	0.15	-1.1
1,548,090	-		CSW01_07265	0.17	+0.4
1,548,102	-		CSW01_07265	0.20	+2.9
1,548,157	-		CSW01_07265	0.36	+0.1
1,548,187	+		CSW01_07265	0.44	-1.3
1,548,193	-		CSW01_07265	0.46	+1.0
1,548,204	+		CSW01_07265	0.49	+0.7
1,548,212	-		CSW01_07265	0.51	-0.4
1,548,274	+		CSW01_07265	0.68	-3.0
1,548,302	+		CSW01_07265	0.76	+0.6
1,548,308	-		CSW01_07265	0.78	-1.7
1,548,310	-		CSW01_07265	0.78	-0.2
1,548,321	+		CSW01_07265	0.81	+0.5
1,548,385	-				-0.7
1,548,424	-				+0.4
1,548,424	-				+0.1
1,548,426	-				-1.2
1,548,448	-				+0.7
1,548,475	+		CSW01_07270	0.13	+0.1
1,548,567	-		CSW01_07270	0.33	+0.1
1,548,638	+		CSW01_07270	0.48	-0.8
1,548,641	-		CSW01_07270	0.49	-0.3
1,548,760	-		CSW01_07270	0.75	+0.1
1,548,793	+		CSW01_07270	0.82	-1.3
1,548,813	-		CSW01_07270	0.86	-1.1
1,548,863	-				+0.0
1,548,863	-				-1.1
1,548,931	-				+1.2
1,549,027	+				-2.0
1,549,040	-				-1.2
1,549,047	+				+0.6
1,549,047	+				+0.7
1,549,054	+				-0.5
1,549,055	+				-0.5
1,549,063	-				-0.9
1,549,063	-				+0.3
1,549,090	-				+0.3
1,549,292	+				-0.1
1,549,292	+				+0.1
1,549,325	+				-0.1
1,549,414	+				-1.5
1,549,422	-				+1.7
1,549,507	-				+0.7
1,549,533	+				+0.1
1,549,594	-				+0.9
1,549,610	+				+0.1
1,549,823	+				-0.1
1,549,845	-				+2.0
1,550,020	+				-0.1
1,550,041	-				-0.2
1,550,159	+				-0.2
1,550,159	+				+0.9
1,550,245	+		CSW01_07275	0.10	-3.5
1,550,259	+		CSW01_07275	0.10	-1.0
1,550,267	-		CSW01_07275	0.10	+0.4
1,550,470	+		CSW01_07275	0.12	-0.0
1,550,584	-		CSW01_07275	0.13	+1.1
1,550,677	-		CSW01_07275	0.13	+0.5
1,550,825	+		CSW01_07275	0.14	+0.6
1,550,828	-		CSW01_07275	0.14	+0.4
1,550,836	+		CSW01_07275	0.14	+1.1
1,550,844	-		CSW01_07275	0.15	-0.2
1,550,844	-		CSW01_07275	0.15	+0.7
1,550,844	-		CSW01_07275	0.15	+0.2
1,550,844	-		CSW01_07275	0.15	+0.4
1,550,858	-		CSW01_07275	0.15	-1.5
1,550,926	-		CSW01_07275	0.15	-1.8
1,550,955	-		CSW01_07275	0.15	-3.1
1,550,983	-		CSW01_07275	0.16	-0.2
1,550,983	-		CSW01_07275	0.16	-0.2
1,551,012	-		CSW01_07275	0.16	-1.0
1,551,107	+		CSW01_07275	0.16	-1.8
1,551,166	+		CSW01_07275	0.17	-0.8
1,551,196	-		CSW01_07275	0.17	+0.4
1,551,201	-		CSW01_07275	0.17	-3.2
1,551,272	+		CSW01_07275	0.18	+2.8
1,551,289	+		CSW01_07275	0.18	-0.8
1,551,377	+		CSW01_07275	0.18	-1.6
1,551,407	-		CSW01_07275	0.19	-0.7
1,551,422	+		CSW01_07275	0.19	+0.3
1,551,439	-		CSW01_07275	0.19	-1.9
1,551,460	+		CSW01_07275	0.19	-1.0
1,551,559	-		CSW01_07275	0.20	+0.3
1,551,608	+		CSW01_07275	0.20	+0.5
1,551,683	+		CSW01_07275	0.21	+0.8
1,551,691	-		CSW01_07275	0.21	+0.1
1,551,691	-		CSW01_07275	0.21	+0.0
1,551,696	-		CSW01_07275	0.21	-0.4
1,551,906	+		CSW01_07275	0.22	+0.3
1,551,906	+		CSW01_07275	0.22	+0.3
1,551,906	+		CSW01_07275	0.22	+1.3
1,551,906	+		CSW01_07275	0.22	+0.2
1,551,914	-		CSW01_07275	0.22	+0.5
1,551,914	-		CSW01_07275	0.22	+1.3
1,551,914	-		CSW01_07275	0.22	-1.2
1,551,914	-		CSW01_07275	0.22	+1.0
1,551,914	-		CSW01_07275	0.22	-0.7
1,552,013	+		CSW01_07275	0.23	-0.1
1,552,021	-		CSW01_07275	0.23	-2.5
1,552,022	+		CSW01_07275	0.23	-0.4
1,552,036	+		CSW01_07275	0.23	+1.1
1,552,094	+		CSW01_07275	0.24	-0.7
1,552,123	-		CSW01_07275	0.24	+0.5
1,552,150	-		CSW01_07275	0.24	-0.4
1,552,174	+		CSW01_07275	0.24	-0.6
1,552,251	-		CSW01_07275	0.25	-0.7
1,552,253	-		CSW01_07275	0.25	+0.2
1,552,267	+		CSW01_07275	0.25	-0.4
1,552,281	-		CSW01_07275	0.25	+0.7
1,552,281	-		CSW01_07275	0.25	+0.4
1,552,281	-		CSW01_07275	0.25	-0.4
1,552,282	-		CSW01_07275	0.25	-1.9
1,552,310	-		CSW01_07275	0.25	-2.0
1,552,333	-		CSW01_07275	0.25	-0.3
1,552,364	+		CSW01_07275	0.26	+0.6
1,552,382	+		CSW01_07275	0.26	-0.9
1,552,390	-		CSW01_07275	0.26	-0.5
1,552,432	-		CSW01_07275	0.26	+1.1
1,552,441	-		CSW01_07275	0.26	+1.5
1,552,441	-		CSW01_07275	0.26	-1.8
1,552,478	+		CSW01_07275	0.26	+0.5
1,552,495	+		CSW01_07275	0.27	+1.1
1,552,554	-		CSW01_07275	0.27	+0.1
1,552,604	+		CSW01_07275	0.27	-2.0
1,552,667	+		CSW01_07275	0.28	+0.6
1,552,693	+		CSW01_07275	0.28	+1.0
1,552,709	-		CSW01_07275	0.28	-0.4
1,552,718	+		CSW01_07275	0.28	+0.5
1,552,718	+		CSW01_07275	0.28	+0.5
1,552,726	-		CSW01_07275	0.28	-0.3
1,552,726	-		CSW01_07275	0.28	+0.5
1,552,819	+		CSW01_07275	0.29	+0.6
1,552,957	+		CSW01_07275	0.30	-2.0
1,552,986	-		CSW01_07275	0.30	+0.7
1,553,054	-		CSW01_07275	0.31	+0.6
1,553,059	-		CSW01_07275	0.31	-0.7
1,553,148	+		CSW01_07275	0.31	+0.4
1,553,158	+		CSW01_07275	0.31	-0.7
1,553,163	+		CSW01_07275	0.31	+0.4
1,553,163	+		CSW01_07275	0.31	+0.5
1,553,163	+		CSW01_07275	0.31	+0.1
1,553,204	-		CSW01_07275	0.32	-0.2
1,553,252	-		CSW01_07275	0.32	-0.4
1,553,276	-		CSW01_07275	0.32	+0.7
1,553,310	-		CSW01_07275	0.33	+0.1
1,553,364	+		CSW01_07275	0.33	-0.9
1,553,385	+		CSW01_07275	0.33	+1.5
1,553,393	-		CSW01_07275	0.33	-1.2
1,553,427	-		CSW01_07275	0.33	+0.5
1,553,445	+		CSW01_07275	0.34	+0.6
1,553,456	+		CSW01_07275	0.34	+0.0
1,553,483	-		CSW01_07275	0.34	+0.2
1,553,637	+		CSW01_07275	0.35	+1.1
1,553,659	+		CSW01_07275	0.35	-0.3
1,553,660	+		CSW01_07275	0.35	+0.0
1,553,696	-		CSW01_07275	0.35	-0.4
1,553,702	+		CSW01_07275	0.35	+0.5
1,553,740	-		CSW01_07275	0.36	+0.8
1,553,740	-		CSW01_07275	0.36	+0.5
1,553,745	-		CSW01_07275	0.36	-0.7
1,553,756	+		CSW01_07275	0.36	+2.3
1,553,763	+		CSW01_07275	0.36	-0.1
1,553,796	+		CSW01_07275	0.36	-1.2
1,553,902	-		CSW01_07275	0.37	-0.4
1,553,961	+		CSW01_07275	0.37	+0.8
1,553,961	+		CSW01_07275	0.37	-0.7
1,554,048	-		CSW01_07275	0.38	+1.3
1,554,058	-		CSW01_07275	0.38	+1.1
1,554,172	+		CSW01_07275	0.39	+0.0
1,554,203	+		CSW01_07275	0.39	+1.3
1,554,206	-		CSW01_07275	0.39	+0.2
1,554,220	+		CSW01_07275	0.39	-2.2
1,554,220	+		CSW01_07275	0.39	-0.1
1,554,221	+		CSW01_07275	0.39	+0.4
1,554,234	-		CSW01_07275	0.39	-0.6
1,554,241	+		CSW01_07275	0.39	+0.6
1,554,391	-		CSW01_07275	0.40	+0.0
1,554,400	+		CSW01_07275	0.41	+0.6
1,554,541	+		CSW01_07275	0.42	+0.1
1,554,597	-		CSW01_07275	0.42	+3.1
1,554,614	+		CSW01_07275	0.42	+1.1
1,554,648	+		CSW01_07275	0.42	-0.1
1,554,717	+		CSW01_07275	0.43	+0.0
1,554,725	-		CSW01_07275	0.43	+0.3
1,554,919	-		CSW01_07275	0.44	-0.7
1,554,955	+		CSW01_07275	0.45	-1.4
1,554,994	-		CSW01_07275	0.45	+0.7
1,555,047	+		CSW01_07275	0.45	+0.2
1,555,117	+		CSW01_07275	0.46	+0.1
1,555,178	+		CSW01_07275	0.46	+0.6
1,555,186	+		CSW01_07275	0.46	-2.1
1,555,186	-		CSW01_07275	0.46	+0.6
1,555,222	+		CSW01_07275	0.47	-1.7
1,555,366	+		CSW01_07275	0.48	-0.2
1,555,366	+		CSW01_07275	0.48	+0.2
1,555,374	-		CSW01_07275	0.48	-0.2
1,555,402	-		CSW01_07275	0.48	-0.0
1,555,579	-		CSW01_07275	0.49	-0.1
1,555,716	-		CSW01_07275	0.50	-0.2
1,555,803	+		CSW01_07275	0.51	-0.3
1,555,811	-		CSW01_07275	0.51	+0.6
1,555,820	-		CSW01_07275	0.51	+1.5
1,555,821	-		CSW01_07275	0.51	+0.1
1,555,873	+		CSW01_07275	0.51	+0.7
1,555,873	+		CSW01_07275	0.51	+0.7
1,555,881	-		CSW01_07275	0.51	-0.5
1,556,024	+		CSW01_07275	0.52	+0.2
1,556,027	-		CSW01_07275	0.52	+1.0
1,556,076	-		CSW01_07275	0.53	+0.9
1,556,105	-		CSW01_07275	0.53	+0.1
1,556,148	+		CSW01_07275	0.53	-0.1
1,556,149	+		CSW01_07275	0.53	+0.4
1,556,223	+		CSW01_07275	0.54	+1.0
1,556,286	+		CSW01_07275	0.54	+0.2
1,556,294	-		CSW01_07275	0.54	+0.1
1,556,356	+		CSW01_07275	0.55	+1.0
1,556,374	+		CSW01_07275	0.55	+1.6
1,556,419	-		CSW01_07275	0.55	+0.0
1,556,424	-		CSW01_07275	0.55	+0.3
1,556,451	-		CSW01_07275	0.56	+2.1
1,556,512	+		CSW01_07275	0.56	+0.3
1,556,523	+		CSW01_07275	0.56	-0.2
1,556,685	+		CSW01_07275	0.57	+0.1
1,556,779	-		CSW01_07275	0.58	-2.7
1,556,848	+		CSW01_07275	0.58	-0.2
1,556,940	-		CSW01_07275	0.59	-0.2
1,556,949	-		CSW01_07275	0.59	-0.6
1,556,949	-		CSW01_07275	0.59	+0.6
1,557,024	-		CSW01_07275	0.60	+0.1
1,557,151	+		CSW01_07275	0.61	+1.0
1,557,186	-		CSW01_07275	0.61	-0.9
1,557,406	+		CSW01_07275	0.62	+0.8
1,557,423	+		CSW01_07275	0.63	-0.1
1,557,447	+		CSW01_07275	0.63	+0.2
1,557,504	+		CSW01_07275	0.63	+1.2
1,557,512	-		CSW01_07275	0.63	+0.4
1,557,540	-		CSW01_07275	0.63	+0.1
1,557,540	-		CSW01_07275	0.63	+0.2
1,557,579	-		CSW01_07275	0.64	-0.7
1,557,589	-		CSW01_07275	0.64	+0.2
1,557,604	-		CSW01_07275	0.64	+0.2
1,557,604	-		CSW01_07275	0.64	+0.5
1,557,606	+		CSW01_07275	0.64	-0.2
1,557,614	-		CSW01_07275	0.64	+0.5
1,557,709	-		CSW01_07275	0.65	-0.1
1,557,713	+		CSW01_07275	0.65	+0.3
1,557,721	+		CSW01_07275	0.65	-0.2
1,557,741	-		CSW01_07275	0.65	-0.9
1,557,750	+		CSW01_07275	0.65	+0.1
1,557,785	-		CSW01_07275	0.65	+0.2
1,557,850	+		CSW01_07275	0.66	-0.1
1,557,853	-		CSW01_07275	0.66	-0.4
1,558,327	+		CSW01_07275	0.69	-0.4
1,558,382	+		CSW01_07275	0.70	+0.1
1,558,392	-		CSW01_07275	0.70	+0.5
1,558,423	-		CSW01_07275	0.70	-0.4
1,558,442	+		CSW01_07275	0.70	-0.4
1,558,459	-		CSW01_07275	0.70	-0.2
1,558,469	-		CSW01_07275	0.70	+0.7
1,558,469	-		CSW01_07275	0.70	-0.6
1,558,469	-		CSW01_07275	0.70	+0.2
1,558,469	-		CSW01_07275	0.70	+1.1
1,558,469	-		CSW01_07275	0.70	+1.9
1,558,489	-		CSW01_07275	0.70	-0.4
1,558,530	+		CSW01_07275	0.71	+0.7
1,558,544	-		CSW01_07275	0.71	+0.6
1,558,574	-		CSW01_07275	0.71	+0.8
1,558,580	-		CSW01_07275	0.71	+0.3
1,558,618	-		CSW01_07275	0.71	-1.1
1,558,624	+		CSW01_07275	0.71	+0.5
1,558,638	+		CSW01_07275	0.71	+0.3
1,558,646	-		CSW01_07275	0.72	+1.1
1,558,646	-		CSW01_07275	0.72	-0.2
1,558,646	-		CSW01_07275	0.72	+1.5
1,558,849	+		CSW01_07275	0.73	+0.2
1,558,895	+		CSW01_07275	0.73	-1.7
1,559,099	+		CSW01_07275	0.75	+0.3
1,559,107	-		CSW01_07275	0.75	+1.0
1,559,131	-		CSW01_07275	0.75	-0.7
1,559,304	+		CSW01_07275	0.76	+0.8
1,559,358	+		CSW01_07275	0.77	+0.2
1,559,399	+		CSW01_07275	0.77	-0.7
1,559,407	-		CSW01_07275	0.77	-0.1
1,559,407	-		CSW01_07275	0.77	+0.6
1,559,488	+		CSW01_07275	0.78	+0.2
1,559,510	-		CSW01_07275	0.78	+0.2
1,559,584	+		CSW01_07275	0.78	+1.8
1,559,587	-		CSW01_07275	0.78	+0.6
1,559,609	-		CSW01_07275	0.79	-0.2
1,559,659	+		CSW01_07275	0.79	-0.2
1,559,697	+		CSW01_07275	0.79	+0.9
1,559,705	-		CSW01_07275	0.79	+1.1
1,559,707	+		CSW01_07275	0.79	+0.2
1,559,723	+		CSW01_07275	0.79	-0.7
1,559,791	+		CSW01_07275	0.80	+0.5
1,559,815	-		CSW01_07275	0.80	-0.4
1,559,832	-		CSW01_07275	0.80	+1.1
1,560,053	+		CSW01_07275	0.82	-0.6
1,560,077	-		CSW01_07275	0.82	-0.9
1,560,127	+		CSW01_07275	0.82	-0.2
1,560,150	+		CSW01_07275	0.83	-1.2
1,560,173	+		CSW01_07275	0.83	-1.2
1,560,179	-		CSW01_07275	0.83	-1.5
1,560,196	+		CSW01_07275	0.83	-0.5
1,560,206	+		CSW01_07275	0.83	-0.1
1,560,234	-		CSW01_07275	0.83	+0.6
1,560,255	+		CSW01_07275	0.83	+0.7
1,560,263	-		CSW01_07275	0.83	+1.1
1,560,263	-		CSW01_07275	0.83	-0.9
1,560,333	+		CSW01_07275	0.84	-0.1
1,560,343	+		CSW01_07275	0.84	-0.1
1,560,351	+		CSW01_07275	0.84	+0.1
1,560,351	+		CSW01_07275	0.84	+1.4
1,560,351	+		CSW01_07275	0.84	+0.3
1,560,359	-		CSW01_07275	0.84	+0.8
1,560,408	-		CSW01_07275	0.84	+0.7
1,560,408	-		CSW01_07275	0.84	-2.5
1,560,457	+		CSW01_07275	0.85	+0.6
1,560,465	-		CSW01_07275	0.85	-0.2
1,560,524	-		CSW01_07275	0.85	+1.3
1,560,529	+		CSW01_07275	0.85	-0.7
1,560,532	-		CSW01_07275	0.85	+0.2
1,560,542	-		CSW01_07275	0.85	+1.1
1,560,589	-		CSW01_07275	0.86	-0.0
1,560,655	-		CSW01_07275	0.86	+0.5
1,560,827	-		CSW01_07275	0.87	-1.0
1,560,919	+		CSW01_07275	0.88	-3.7
1,560,919	+		CSW01_07275	0.88	-0.9
1,560,927	-		CSW01_07275	0.88	+0.0
1,560,927	-		CSW01_07275	0.88	+0.5
1,560,927	-		CSW01_07275	0.88	+0.8
1,561,012	+		CSW01_07275	0.89	+0.7
1,561,020	-		CSW01_07275	0.89	-0.2
1,561,020	-		CSW01_07275	0.89	+0.7
1,561,065	+		CSW01_07275	0.89	+0.0
1,561,195	-				+0.3
1,561,206	+				-1.2
1,561,355	-				-0.2
1,561,387	+				-0.8
1,561,514	+				-0.2
1,561,525	+				+1.1
1,561,550	-				+0.2
1,561,644	-				+1.5
1,561,724	-				+0.1
1,561,759	-				-0.3
1,561,786	+				-1.2
1,561,786	+				-0.1
1,561,865	+				+0.5
1,561,865	+				+0.5
1,561,873	-				-0.3
1,561,873	-				+0.9
1,561,873	-				-0.3
1,561,963	-				+0.3
1,562,025	+				+0.3
1,562,027	+				-0.3
1,562,027	+				+0.2
1,562,035	-				-1.8
1,562,035	-				-0.9
1,562,087	+				-0.1
1,562,095	-				-0.7
1,562,095	-				+1.1
1,562,097	+				+0.3
1,562,097	+				-0.6
1,562,097	+				-0.3
1,562,097	+				+0.1
1,562,097	+				-1.0
1,562,097	+				-0.4
1,562,097	+				-1.1
1,562,097	+				-1.7
1,562,097	+				-0.5
1,562,117	-				-2.2
1,562,128	-				-1.1
1,562,306	+				+1.4
1,562,363	+				-0.4
1,562,371	-				+0.2
1,562,429	-				+1.5
1,562,475	-				-1.3
1,562,507	-				+0.2
1,562,544	+				-0.1
1,562,557	-				+0.9
1,562,903	-				+0.3
1,562,909	-				-3.0
1,562,909	-				+0.3
1,562,928	-		CSW01_07280	0.11	+0.3
1,562,939	+		CSW01_07280	0.16	-2.2
1,562,947	-		CSW01_07280	0.19	-0.3
1,562,947	-		CSW01_07280	0.19	-0.9
1,563,045	-		CSW01_07280	0.63	+0.7
1,563,088	-		CSW01_07280	0.82	-1.2
1,563,098	-		CSW01_07280	0.86	-0.1
1,563,098	-		CSW01_07280	0.86	+0.1
1,563,101	-		CSW01_07280	0.88	+0.1
1,563,116	+				-0.7
1,563,156	+				-0.0
1,563,162	+				-1.7
1,563,162	+				+1.3
1,563,162	+				-1.1
1,563,164	-				-0.2
1,563,170	-				-0.7
1,563,189	-				+0.9
1,563,218	-				-1.1
1,563,502	+		CSW01_07285	0.75	+0.3
1,563,503	+		CSW01_07285	0.75	+0.3
1,563,525	-		CSW01_07285	0.81	+0.2
1,563,525	-		CSW01_07285	0.81	+0.6
1,563,530	-		CSW01_07285	0.82	+1.3
1,563,530	-		CSW01_07285	0.82	-0.1