Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04410 and CSW01_04415 are separated by 200 nucleotides CSW01_04415 and CSW01_04420 are separated by 49 nucleotides CSW01_04420 and CSW01_04425 are separated by 54 nucleotides
CSW01_04410: CSW01_04410 - molecular chaperone DnaK, at 919,162 to 921,069
_04410
CSW01_04415: CSW01_04415 - molecular chaperone DnaJ, at 921,270 to 922,415
_04415
CSW01_04420: CSW01_04420 - prepilin-type cleavage/methylation domain-containing protein, at 922,465 to 922,908
_04420
CSW01_04425: CSW01_04425 - general secretion pathway protein GspH, at 922,963 to 923,517
_04425
Position (kb) 921
922
923 Strain fitness (log2 ratio) -1
0
1 at 921.072 kb on + strand at 921.132 kb on + strand at 922.312 kb on + strand at 922.355 kb on + strand at 922.370 kb on - strand at 922.520 kb on + strand, within CSW01_04420 at 922.520 kb on + strand, within CSW01_04420 at 922.788 kb on - strand, within CSW01_04420 at 923.013 kb on + strand at 923.192 kb on - strand, within CSW01_04425 at 923.211 kb on + strand, within CSW01_04425 at 923.217 kb on + strand, within CSW01_04425 at 923.244 kb on + strand, within CSW01_04425 at 923.247 kb on - strand, within CSW01_04425 at 923.260 kb on - strand, within CSW01_04425 at 923.293 kb on - strand, within CSW01_04425 at 923.303 kb on - strand, within CSW01_04425 at 923.342 kb on - strand, within CSW01_04425 at 923.352 kb on + strand, within CSW01_04425 at 923.368 kb on + strand, within CSW01_04425
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5A remove 921,072 + +0.0 921,132 + -0.0 922,312 + +0.3 922,355 + -0.6 922,370 - +0.5 922,520 + CSW01_04420 0.12 +0.1 922,520 + CSW01_04420 0.12 +1.5 922,788 - CSW01_04420 0.73 +0.9 923,013 + -1.5 923,192 - CSW01_04425 0.41 -1.5 923,211 + CSW01_04425 0.45 -0.6 923,217 + CSW01_04425 0.46 -0.0 923,244 + CSW01_04425 0.51 +0.3 923,247 - CSW01_04425 0.51 -0.1 923,260 - CSW01_04425 0.54 -0.0 923,293 - CSW01_04425 0.59 +0.1 923,303 - CSW01_04425 0.61 -0.9 923,342 - CSW01_04425 0.68 -1.2 923,352 + CSW01_04425 0.70 -0.7 923,368 + CSW01_04425 0.73 +0.3
Or see this region's nucleotide sequence